Rh6AG151100

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
23704278 .. 23706538
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG151100.1

Sequence Viewer

Length: 834 bp
ATGATTCATTTAAAGCTGAAGAATTGTTTTCTAAAACCTTTGCCCACATTCAAAGGCTTCAGGAGCTTGAAGAGACTTGATATTGTGCGTGTTACCTTGGCCCAAGATGTTCTTGAAAATCTTATTGTTTGTTGTCCTCTTCTCAAGACATTGACTTTCATAGACTGTGACGGTTTCACCCGTCTCAAGATTGATGCTCCAAAACTCCAATTCTTAGGTTTTAGGGGTCGTTTTGATGATGTTATTCTTGAAAACACCATAAATCTTGATGCTGTTACGATTTATCTGGAGGCTAATGTTGACCAAAAATGGGTTCCCCGTAGTTCTAGCAATCTGGTCTTGTTTTTCCTTCACCTGCCTCGTGTTCGACGACTTGCAATCAGGAGTAACTTTTTAAAGTATTTGGCTGTTAGTGCCTTGACAAGAAAGGTGCCTAAACCATGTTTGCATCTGAAATTTCTTACTATAGAGATACATTTTAATGATCTGGAGGAGATTTTAACTGCTGTACGCCTTCTGAGAAGCTCCCCTGGTTTACAAGAACTAGAAATCACAGCCTTCCCAAAGGATCAAGCTGTTGTTGGAGAAGTGAACTCTTGGTTAGATGACAACCTCATTTGGTCATTCACTAAACTGCGACTTGTGAAAATAACCAGCATCTCTGGTGCCAAAGCTGAAGTAGATTTCATTAGATTTTTGCTTTTAAGTTCACCTGTGCTTGAGAGGATGACTATTAAGCCTGCTTCTGTGAATGGTTCTTCAGAACTGCTCAAAAAGTTGCTCCGGCTTGGGCGTGCCTCGGTGCATTCAGAGATAATCTACTTGGACCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

277

Amino Acids

31.59

Weight (kDa)

9.55

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 3 - 246 5e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 4 - 184 9.7e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 363
AccB1I GGYRCC 2 cut(s) 430, 665
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 4 cut(s) 38, 43, 696, 744
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 4 cut(s) 52, 70, 116, 251
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 5 cut(s) 16, 66, 525, 575, 674
AluI AGCT 5 cut(s) 16, 66, 525, 575, 674
Alw26I GTCTC 2 cut(s) 67, 188
AlwI GGATC 1 cut(s) 576
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 455
AspS9I GGNCC 2 cut(s) 100, 826
AsuHPI GGTGA 3 cut(s) 169, 344, 702
AvaII GGWCC 1 cut(s) 826
BanI GGYRCC 2 cut(s) 430, 665
BauI CACGAG 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 67, 188
BfaI CTAG 2 cut(s) 327, 545
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 363
Bme1390I CCNGG 1 cut(s) 531
Bme18I GGWCC 1 cut(s) 826
BmgT120I GGNCC 2 cut(s) 100, 826
BmiI GGNNCC 4 cut(s) 315, 432, 667, 828
BmrFI CCNGG 1 cut(s) 531
BmsI GCATC 4 cut(s) 184, 259, 457, 666
BpmI CTGGAG 2 cut(s) 308, 509
BpuEI CTTGAG 3 cut(s) 128, 170, 740
BsaJI CCNNGG 3 cut(s) 96, 529, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 96, 529, 798
BseGI GGATG 1 cut(s) 732
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 506
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 2 cut(s) 430, 665
BsiSI CCGG 1 cut(s) 784
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 67, 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 484, 568
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 510
BspLI GGNNCC 4 cut(s) 315, 432, 667, 828
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 576
BspT107I GGYRCC 2 cut(s) 430, 665
BssECI CCNNGG 3 cut(s) 96, 529, 798
BssMI GATC 2 cut(s) 484, 568
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 167, 173
Bst6I CTCTTC 2 cut(s) 65, 144
BstC8I GCNNGC 2 cut(s) 741, 795
BstDEI CTNAG 2 cut(s) 214, 518
BstF5I GGATG 1 cut(s) 732
BstKTI GATC 2 cut(s) 487, 571
BstMAI GTCTC 2 cut(s) 67, 188
BstMBI GATC 2 cut(s) 484, 568
BstMWI GCNNNNNNNGC 2 cut(s) 63, 413
BstNI CCWGG 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 465
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 732
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 2 cut(s) 741, 795
Cfr13I GGNCC 2 cut(s) 100, 826
Csp6I GTAC 1 cut(s) 509
CviAII CATG 1 cut(s) 441
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 214, 518
DpnI GATC 2 cut(s) 486, 570
DpnII GATC 2 cut(s) 484, 568
DraI TTTAAA 2 cut(s) 12, 396
Eam1104I CTCTTC 2 cut(s) 65, 144
EarI CTCTTC 2 cut(s) 65, 144
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 826
Eco57I CTGAAG 4 cut(s) 38, 43, 696, 744
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 1 cut(s) 444
FaiI YATR 4 cut(s) 161, 260, 442, 467
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 1 cut(s) 440
FokI GGATG 1 cut(s) 739
FspBI CTAG 2 cut(s) 327, 545
GsuI CTGGAG 2 cut(s) 308, 509
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 784
Hin1II CATG 1 cut(s) 444
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 784
HphI GGTGA 3 cut(s) 169, 344, 702
Hpy166II GTNNAC 4 cut(s) 301, 536, 592, 710
Hpy188I TCNGA 4 cut(s) 453, 519, 763, 811
Hpy188III TCNNGA 9 cut(s) 61, 113, 145, 187, 248, 266, 287, 382, 488
Hpy8I GTNNAC 4 cut(s) 301, 536, 592, 710
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 3 cut(s) 359, 524, 568
HpyCH4III ACNGT 2 cut(s) 167, 173
HpyCH4V TGCA 3 cut(s) 377, 448, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 413
HpyF3I CTNAG 2 cut(s) 214, 518
Hsp92II CATG 1 cut(s) 444
Kzo9I GATC 2 cut(s) 484, 568
LmnI GCTCC 4 cut(s) 63, 202, 530, 786
LweI GCATC 4 cut(s) 184, 259, 457, 666
MaeI CTAG 2 cut(s) 327, 545
MaeIII GTNAC 4 cut(s) 91, 167, 274, 386
MalI GATC 2 cut(s) 486, 570
MboI GATC 2 cut(s) 484, 568
MboII GAAGA 4 cut(s) 31, 82, 131, 750
MluCI AATT 3 cut(s) 22, 209, 455
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 7 cut(s) 147, 283, 369, 484, 623, 717, 808
MseI TTAA 6 cut(s) 11, 395, 480, 500, 704, 735
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 1 cut(s) 784
MspR9I CCNGG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 63, 413
NdeII GATC 2 cut(s) 484, 568
NlaIII CATG 1 cut(s) 444
NlaIV GGNNCC 4 cut(s) 315, 432, 667, 828
NmuCI GTSAC 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 1 cut(s) 805
PfeI GAWTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 4 cut(s) 315, 432, 667, 828
PspPI GGNCC 2 cut(s) 100, 826
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 6 cut(s) 11, 395, 480, 500, 704, 735
Sau3AI GATC 2 cut(s) 484, 568
Sau96I GGNCC 2 cut(s) 100, 826
ScrFI CCNGG 1 cut(s) 531
SfaNI GCATC 4 cut(s) 184, 259, 457, 666
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 826
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 3 cut(s) 143, 185, 719
SmoI CTYRAG 3 cut(s) 143, 185, 719
Sse9I AATT 3 cut(s) 22, 209, 455
SspMI CTAG 2 cut(s) 327, 545
StyD4I CCNGG 1 cut(s) 529
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 167, 173
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 22, 209, 455
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 6 cut(s) 11, 395, 480, 500, 704, 735
Tru9I TTAA 6 cut(s) 11, 395, 480, 500, 704, 735
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 148, 676
VpaK11BI GGWCC 1 cut(s) 826
XapI RAATTY 1 cut(s) 455
XspI CTAG 2 cut(s) 327, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.