RchiOBHm_Chr6g0248641

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000103
Physical Location & Seq
Reverse (-)
4597718 .. 4598332
615 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22286

Sequence Viewer

Length: 615 bp
ATGTTGGATAGAATTAGCAATTTGCCAGATGATGTCACAGAAAATATTGTATCACGTTTGCCGCTTAGGGAGGCAACAAGAACAAGTGTCTTGTCCAGCAAGTGGAGGTACAAATCGGCTATGCTTCAAGATCTAGCGTTTGATGATAAGTGTCTCTCGACTCAAAGGCGAACAACCTTTGTGAACGTTGTTGATCATGTACTCCTACTTCATATTGGCCCCCTATGCAAGTTCATGCTTTATTGTATAAATCCTCTAGTACCAACACCAAGTCATGATATTGATCGATGGGTGACTCATCTATCAAGAAACTCTATCAAACAGTTAATAGTTTATCCATGGACATCGAAGCGTTACAACATGCCATCAAGTTTGTTCTCCTGCCAAGATTTGGTTTGTTTAGAGTCATATATGTGTTTGCTAAGCCCTCCGTCCACATTCAGAGGCTTCAGGAATTTGAAGTACCTAACTATATGCTATGTTAATTTGTCTCAAGTTGTGGTTGAAAATTTGATTTCTTGTAGTCCTCTGCTTAAGAGAATAACAGCGCGACATTGTGATGGTTTCACCAATCTCAAGATCGATGCACCAAATCTCGACTATTTTCTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

204

Amino Acids

23.56

Weight (kDa)

8.82

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 37 3.3e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 90 - 195 1.8e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 94 - 200 7.9e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 102, 391
AccII CGCG 1 cut(s) 550
AciI CCGC 1 cut(s) 62
AclI AACGTT 1 cut(s) 186
AcsI RAATTY 2 cut(s) 454, 508
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 4 cut(s) 110, 201, 261, 464
AfiI CCNNNNNNNGG 2 cut(s) 102, 391
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 3 cut(s) 128, 460, 506
Alw26I GTCTC 2 cut(s) 158, 495
AoxI GGCC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 454, 508
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 304, 559
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BccI CCATC 3 cut(s) 282, 373, 554
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 158, 495
BfaI CTAG 2 cut(s) 134, 257
BfrI CTTAAG 1 cut(s) 533
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 62
BlpI GCTNAGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 574
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 477, 560
Bsa29I ATCGAT 2 cut(s) 286, 582
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 391
Bse8I GATNNNNATC 1 cut(s) 282
BseCI ATCGAT 2 cut(s) 286, 582
BseDI CCNNGG 1 cut(s) 338
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 102, 391
Bsh1236I CGCG 1 cut(s) 550
BshFI GGCC 1 cut(s) 219
BshVI ATCGAT 2 cut(s) 286, 582
BslI CCNNNNNNNGG 2 cut(s) 102, 391
BsmAI GTCTC 2 cut(s) 158, 495
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 4 cut(s) 130, 193, 283, 579
Bsp1720I GCTNAGC 1 cut(s) 422
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 219
BspDI ATCGAT 2 cut(s) 286, 582
BspFNI CGCG 1 cut(s) 550
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 220
BspTI CTTAAG 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 4 cut(s) 130, 193, 283, 579
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 65, 422
BstDSI CCRYGG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 550
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 4 cut(s) 133, 196, 286, 582
BstMAI GTCTC 2 cut(s) 158, 495
BstMBI GATC 4 cut(s) 130, 193, 283, 579
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 364
BstUI CGCG 1 cut(s) 550
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 2 cut(s) 286, 582
BsuRI GGCC 1 cut(s) 219
BsuTUI ATCGAT 2 cut(s) 286, 582
BtgI CCRYGG 1 cut(s) 338
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 218
ClaI ATCGAT 2 cut(s) 286, 582
Csp6I GTAC 4 cut(s) 109, 200, 260, 463
CviAII CATG 5 cut(s) 197, 235, 275, 339, 361
CviJI RGCY 4 cut(s) 119, 219, 426, 447
CviKI_1 RGCY 4 cut(s) 119, 219, 426, 447
CviQI GTAC 4 cut(s) 109, 200, 260, 463
DdeI CTNAG 2 cut(s) 65, 422
DpnI GATC 4 cut(s) 132, 195, 285, 581
DpnII GATC 4 cut(s) 130, 193, 283, 579
Eco130I CCWWGG 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 5 cut(s) 200, 238, 278, 342, 364
FatI CATG 5 cut(s) 196, 234, 274, 338, 360
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 2 cut(s) 134, 257
GlaI GCGC 1 cut(s) 549
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 550
Hin1II CATG 5 cut(s) 200, 238, 278, 342, 364
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HinfI GANTC 3 cut(s) 160, 295, 404
HphI GGTGA 2 cut(s) 304, 559
Hpy166II GTNNAC 2 cut(s) 184, 435
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 7 cut(s) 128, 157, 275, 306, 451, 577, 596
Hpy8I GTNNAC 2 cut(s) 184, 435
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 2 cut(s) 55, 186
HpyCH4V TGCA 2 cut(s) 228, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 2 cut(s) 65, 422
HpySE526I ACGT 2 cut(s) 55, 186
Hsp92II CATG 5 cut(s) 200, 238, 278, 342, 364
HspAI GCGC 1 cut(s) 548
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 4 cut(s) 130, 193, 283, 579
LpnPI CCDG 4 cut(s) 39, 109, 394, 436
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 134, 257
MaeII ACGT 2 cut(s) 55, 186
MaeIII GTNAC 3 cut(s) 34, 292, 353
MalI GATC 4 cut(s) 132, 195, 285, 581
MboI GATC 4 cut(s) 130, 193, 283, 579
MflI RGATCY 1 cut(s) 130
MluCI AATT 5 cut(s) 12, 19, 454, 484, 508
MlyI GAGTC 3 cut(s) 154, 289, 413
MnlI CCTC 6 cut(s) 64, 99, 264, 437, 438, 537
MseI TTAA 4 cut(s) 326, 483, 534, 613
MslI CAYNNNNRTG 2 cut(s) 412, 558
MspCI CTTAAG 1 cut(s) 533
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 338
NdeII GATC 4 cut(s) 130, 193, 283, 579
NlaIII CATG 5 cut(s) 200, 238, 278, 342, 364
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 34, 292
NspI RCATGY 1 cut(s) 364
PagI TCATGA 1 cut(s) 274
PflMI CCANNNNNTGG 2 cut(s) 102, 391
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 3 cut(s) 154, 289, 412
PpsI GAGTC 3 cut(s) 154, 289, 412
Psp1406I AACGTT 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 4 cut(s) 110, 201, 261, 464
RsaNI GTAC 4 cut(s) 109, 200, 260, 463
RseI CAYNNNNRTG 2 cut(s) 412, 558
SaqAI TTAA 4 cut(s) 326, 483, 534, 613
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 4 cut(s) 130, 193, 283, 579
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 3 cut(s) 154, 289, 413
SetI ASST 5 cut(s) 58, 110, 179, 189, 468
SfaNI GCATC 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 412, 558
SmlI CTYRAG 3 cut(s) 492, 533, 575
SmoI CTYRAG 3 cut(s) 492, 533, 575
Sse9I AATT 5 cut(s) 12, 19, 454, 484, 508
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 134, 257
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 2 cut(s) 58, 189
TaqI TCGA 5 cut(s) 158, 286, 347, 582, 597
TasI AATT 5 cut(s) 12, 19, 454, 484, 508
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 64
Tru1I TTAA 4 cut(s) 326, 483, 534, 613
Tru9I TTAA 4 cut(s) 326, 483, 534, 613
TseFI GTSAC 2 cut(s) 34, 292
Tsp45I GTSAC 2 cut(s) 34, 292
TspDTI ATGAA 2 cut(s) 200, 223
TspGWI ACGGA 1 cut(s) 420
Van91I CCANNNNNTGG 2 cut(s) 102, 391
Vha464I CTTAAG 1 cut(s) 533
XapI RAATTY 2 cut(s) 454, 508
XceI RCATGY 1 cut(s) 364
XspI CTAG 2 cut(s) 134, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.