Rorug05G0534200

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000103
Physical Location & Seq
Forward (+)
72216286 .. 72225378
9093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0534200.1

Sequence Viewer

Length: 2868 bp
ATGTATCAATCTACAGCTTGGACGTGTGTGGCCGTTTTGGCCGTGTGCTTGTGCTGGTCTTCACTACAAGCTGGAACACAAGCGCAGAATATTACCAACCCAGTAGAAGTGACGGCATTGAAGGCCATAAAGAAAAGTTTGATCGATCCCAACAAGAATCTGAGCAATTGGAACCAAGGGGATCCATGTACAGAAAACTGGACAGGCGTTTTGTGCTTCAACAGATCATTAGATGATGGATATCTTCATGTTCAAGAATTGCAACTACTAGATATGAATCTCTCAGGAACTTTGTCACCAGAGCTTGGCCGCCTATCTTATGTGATAATATTGGATTTTATGTGGAACAACATAAGTGGAAGTATACCAAAGGAGATAGGCAACATTACATCTTTGGAACTCTTGCTGCTGAATGGAAACCAATTGTCAGGTCCCCTGCCTGAAGAGCTTGGTTCTCTTCCGAACTTGGACAGAATACAAATTGACCAGAACCAAATTTCAGGACCGATACCTAAATCATTTGCAAATTTGAACAAAACAAAGCACTTTCACATGAACAACAATTCAATTAGCGGGCAAATTCCATCTGAGCTTTCCAGATTACCGAGTCTTGTCCACTTTCTTCTTGACAACAACAACTTATCTGGGTATCTTCCACCAGAGTTCTCAGATCTGCCGAACTTATTAATACTTCAACTTGACAACAACAACTTTGATGGGAGTACAATTCCGGCTTCTTATGGCAACATGTCTAAACTGTTGAAGTTGAGTCTCAGGAACTGCAACTTAGAAGGACCTATTCCTGATTTCAGTAGGATACCCAAACTTGGATATTTAGATCTAAGTAGGAATCGGCTAAATGGATCCATACCTCTGGGAAAACTTTCGGATGACATCATAACAATAAATTTATCAAACAACACTCTTACTGGGAGCATTCCTGCCAACTTTTCCGGTCTTCCACTGCTTCAAAGATTGTCCATTGCGAACAATTCACTGAGTGGCATTGTTCCAGCATCCCTTTGGAATGATACGACACTCAATGCAACAGAAAGACTAATCTTGGAGTTGCAGAACAATCAGCTTACAAATATATCTGGCAGTACTCAAACCCCACAGAATGTCACTGTCTGGCTTCAGGGAAATCCAGTTTGCTCGAATGCTAACCTAGACAATTTATGTGGATCTGAAAATGATGATGAAGATGACAGTGAGAGTTCAACCAACTCTACTGCTGGCTGTCCAAGTCAAGCATGCCCGCCTCCTTACGAATATCTTCCTGTAGTTTGTTTCTGTGCTGCTCCACTACTTATTGAATATCGGTTGAAAAGTCCTGGATTCTCAGATTTTCGCCCTTACAAAAGTACATTTGAGGAGTATCTTACATCTGGTCTCGTCTTAGATCTTGATCAACTGGACATTGCTTCATTTGTATGGCAAAAGGGACCTCGACTGGGAATATCACTGAAGCTTTTCCCTGTATATGTTGCTGCTAATCCCAATATTTCCCATATTTTCAATAAGAGTGAAGTCCAAAGAATCCTTGGCATGTTCACAGGATGGAATATTCCCGATAGTGAATTGTTCGGACCTTATGAGCTAATTGGCATCGATCTATTGGATCCTTATAAGGGCGTTGTCCCCTCTAAGAAGTCTGGTGTAAGCAAGGGTGCTCTGGCTGGCATAATAGTAGGAACTTTTGCCAGTGCTGTTGCATTATCTGCAGTTGTCTGTTTTTTAATACTGAGAAGGCATCAGAGGAACCACCCTGCTATTTCAAGAAGACGTCGTAAATCGAAGAGTTCCATAAAAATTGATGGTGTTAAGGCTTTCACTTATGGAGAAATGGCCACTGCTACAGACAATTTTAACATTTCTGCTCAAATTGGCCAAGGTGGTTATGGAAAGGTATACAAAGGCACTCTGGCTGATGGCACACTTGTGGCCATAAAACGTGCACAAGAAGGATCGTTACAGGGTGAGAAGGAGTTTCTAACAGAAATAGAACTATTGTCACCCTTACATCATAGGAATCTGGTCTCCTTAGTTGGATATTGTGATGATGAAGGTGAACAGATGTTGGTTTATGAGTTCATGTCGCATGGCACTCTAAGGGATCACCTCTCTGCAGTTAGGTCGAAAGAACCTCTGGGATTTGAAATGAGATTGAGAATTGCTCTGGGATCAGCCAGGGGCATCCTCTACCTACATACAGAAGCCAACCCTCCGATATTCCATCGAGATATCAAGGCCAGCAACATATTATTGGACTCCAAGTTTGTAGCAAAGGTTGCTGATTTTGGACTTTCCCGACTTGCCCCAGTACCTGATCTTGAAGGGACTACGCCTGCTCATGTATCCACAGTAGTGAAGGGGACGCCAGGTTACCTTGATCCGGAGTACTTCTTAACCCATAAACTAACAGACAAGAGTGATGTTTATAGCCTCGGTGTTGTGTTTCTGGAGCTCTTAACTGGAATGCAGCCAATCTCACATGGAAAAAACATTGTTCGAGAGGTAAATATTGCATTCCAATCCGGTATGATCTTCTCAGTAATTGATGGGCGAATGGGGTCTTATCCTTCTGACTGTGTGGAAAAGTTCTTGAGTTTAGCCCTCAAGTGTTGTCAAGATGAGACAGATGCAAGACCCTCAATGGCAGAGGTGGTTCGAGAGCTCGAAAACATATGGTTTATGATGCCGGGGACGGACAGCAGAACAACGGAATCAGTGCTCAGTAGTAGTACCGGAAAGGTAGTGAGCGATTCACCATCTTCATCCAATGCAGGGAAGAATCCCTATGTTTCTTCAGATGTCTCCGGCAGTGACCTTGTTAGTGGAGTCATACCTACAATCACACCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

955

Amino Acids

104.26

Weight (kDa)

5.47

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 36 - 72 2.1e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 154 - 214 7.9e-07 Leucine rich repeat
Pkinase PF00069 624 - 891 5.8e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 625 - 893 1.8e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1629
AatII GACGTC 1 cut(s) 1789
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 2 cut(s) 364, 1911
AccIII TCCGGA 1 cut(s) 2395
AciI CCGC 3 cut(s) 310, 573, 1259
AcoI YGGCCR 6 cut(s) 30, 39, 307, 1848, 1888, 1944
AcsI RAATTY 4 cut(s) 495, 526, 579, 907
AcuI CTGAAG 4 cut(s) 462, 1121, 1487, 2793
AcyI GRCGYC 2 cut(s) 1786, 2378
AdeI CACNNNGTG 1 cut(s) 1001
AfaI GTAC 7 cut(s) 190, 724, 1105, 1366, 2325, 2402, 2746
AfiI CCNNNNNNNGG 6 cut(s) 305, 827, 1454, 1631, 2395, 2787
AflIII ACRYGT 2 cut(s) 23, 747
AjiI CACGTC 1 cut(s) 24
AjnI CCWGG 3 cut(s) 1333, 2189, 2380
AleI CACNNNNGTG 2 cut(s) 1940, 2366
Alw21I GWGCWC 5 cut(s) 1675, 1960, 2469, 2679, 2736
Alw26I GTCTC 5 cut(s) 776, 1397, 2044, 2630, 2821
Alw44I GTGCAC 1 cut(s) 1956
AlwNI CAGNNNCTG 2 cut(s) 780, 2327
Aor13HI TCCGGA 1 cut(s) 2395
AoxI GGCC 8 cut(s) 30, 39, 123, 307, 1848, 1888, 1944, 2250
ApaLI GTGCAC 1 cut(s) 1956
ApeKI GCWGC 4 cut(s) 406, 1298, 1490, 2482
ApoI RAATTY 4 cut(s) 495, 526, 579, 907
ArsI GACNNNNNNTTYG 4 cut(s) 193, 225, 2261, 2293
AseI ATTAAT 1 cut(s) 686
Asp700I GAANNNNTTC 3 cut(s) 883, 1275, 1472
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 5 cut(s) 431, 503, 794, 1445, 1589
AsuC2I CCSGG 1 cut(s) 2703
AsuHPI GGTGA 6 cut(s) 288, 1991, 2007, 2081, 2111, 2760
AvaII GGWCC 5 cut(s) 431, 503, 794, 1445, 1589
BaeGI GKGCMC 1 cut(s) 1960
BalI TGGCCA 3 cut(s) 1850, 1890, 1946
BamHI GGATCC 3 cut(s) 181, 863, 1621
BanII GRGCYC 2 cut(s) 2469, 2679
BarI GAAGNNNNNNTAC 2 cut(s) 1956, 1988
BbsI GAAGAC 3 cut(s) 51, 950, 1789
Bbv12I GWGCWC 5 cut(s) 1675, 1960, 2469, 2679, 2736
BbvI GCAGC 4 cut(s) 393, 1285, 1477, 2494
BccI CCATC 9 cut(s) 230, 592, 710, 1554, 1811, 1925, 2244, 2555, 2779
BceAI ACGGC 3 cut(s) 17, 26, 129
BcgI CGANNNNNNTGC 2 cut(s) 2118, 2152
BciT130I CCWGG 3 cut(s) 1335, 2191, 2382
BciVI GTATCC 2 cut(s) 810, 2368
BclI TGATCA 1 cut(s) 1408
BcnI CCSGG 1 cut(s) 2703
BcoDI GTCTC 5 cut(s) 776, 1397, 2044, 2630, 2821
BfaI CTAG 2 cut(s) 269, 1169
BfmI CTRYAG 5 cut(s) 12, 1281, 1722, 1857, 2127
BfuI GTATCC 2 cut(s) 810, 2368
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 3 cut(s) 670, 838, 1402
BisI GCNGC 5 cut(s) 310, 407, 1299, 1491, 2483
BlsI GCNGC 5 cut(s) 311, 408, 1300, 1492, 2484
BmcAI AGTACT 2 cut(s) 1105, 2402
Bme1390I CCNGG 4 cut(s) 1335, 2191, 2382, 2703
Bme18I GGWCC 5 cut(s) 431, 503, 794, 1445, 1589
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 5 cut(s) 431, 503, 794, 1445, 1589
BmiI GGNNCC 7 cut(s) 173, 183, 433, 865, 1446, 1623, 1763
BmrFI CCNGG 4 cut(s) 1335, 2191, 2382, 2703
BmrI ACTGGG 4 cut(s) 95, 939, 1463, 2315
BmsI GCATC 6 cut(s) 1025, 1617, 1762, 2205, 2632, 2688
BmuI ACTGGG 4 cut(s) 95, 939, 1463, 2315
BpiI GAAGAC 3 cut(s) 51, 950, 1789
BplI GAGNNNNNCTC 2 cut(s) 2161, 2193
BpmI CTGGAG 1 cut(s) 2483
BpuEI CTTGAG 2 cut(s) 2603, 2626
BpuMI CCSGG 1 cut(s) 2703
Bsa29I ATCGAT 2 cut(s) 144, 1611
BsaBI GATNNNNATC 3 cut(s) 240, 276, 1407
BsaHI GRCGYC 2 cut(s) 1786, 2378
BsaI GGTCTC 2 cut(s) 1397, 2044
BsaJI CCNNGG 6 cut(s) 175, 1543, 1891, 2190, 2446, 2702
BsaWI WCCGGW 4 cut(s) 953, 2395, 2537, 2747
Bsc4I CCNNNNNNNGG 6 cut(s) 305, 827, 1454, 1631, 2395, 2787
Bse1I ACTGG 9 cut(s) 101, 203, 934, 1148, 1419, 1458, 1704, 2321, 2479
Bse3DI GCAATG 2 cut(s) 981, 1419
Bse8I GATNNNNATC 3 cut(s) 240, 276, 1407
BseAI TCCGGA 1 cut(s) 2395
BseBI CCWGG 3 cut(s) 1335, 2191, 2382
BseCI ATCGAT 2 cut(s) 144, 1611
BseDI CCNNGG 6 cut(s) 175, 1543, 1891, 2190, 2446, 2702
BseGI GGATG 5 cut(s) 895, 1016, 1565, 2196, 2777
BseJI GATNNNNATC 3 cut(s) 240, 276, 1407
BseLI CCNNNNNNNGG 6 cut(s) 305, 827, 1454, 1631, 2395, 2787
BseMI GCAATG 2 cut(s) 981, 1419
BseNI ACTGG 9 cut(s) 101, 203, 934, 1148, 1419, 1458, 1704, 2321, 2479
BseRI GAGGAG 1 cut(s) 1388
BseSI GKGCMC 1 cut(s) 1960
BseXI GCAGC 4 cut(s) 393, 1285, 1477, 2494
BshFI GGCC 8 cut(s) 32, 41, 125, 309, 1850, 1890, 1946, 2252
BshVI ATCGAT 2 cut(s) 144, 1611
BsiHKAI GWGCWC 5 cut(s) 1675, 1960, 2469, 2679, 2736
BsiSI CCGG 7 cut(s) 731, 954, 2396, 2538, 2702, 2748, 2820
BslFI GGGAC 6 cut(s) 417, 1458, 1625, 2353, 2389, 2719
BslI CCNNNNNNNGG 6 cut(s) 305, 827, 1454, 1631, 2395, 2787
BsmAI GTCTC 5 cut(s) 776, 1397, 2044, 2630, 2821
BsmFI GGGAC 6 cut(s) 417, 1458, 1625, 2353, 2389, 2719
BsmI GAATGC 4 cut(s) 936, 1165, 2484, 2528
BsnI GGCC 8 cut(s) 32, 41, 125, 309, 1850, 1890, 1946, 2252
Bso31I GGTCTC 2 cut(s) 1397, 2044
Bsp1286I GDGCHC 5 cut(s) 1675, 1960, 2469, 2679, 2736
Bsp13I TCCGGA 1 cut(s) 2395
Bsp1407I TGTACA 1 cut(s) 188
BspACI CCGC 3 cut(s) 310, 573, 1259
BspANI GGCC 8 cut(s) 32, 41, 125, 309, 1850, 1890, 1946, 2252
BspDI ATCGAT 2 cut(s) 144, 1611
BspEI TCCGGA 1 cut(s) 2395
BspLI GGNNCC 7 cut(s) 173, 183, 433, 865, 1446, 1623, 1763
BspMAI CTGCAG 2 cut(s) 1726, 2131
BspQI GCTCTTC 1 cut(s) 438
BspTNI GGTCTC 2 cut(s) 1397, 2044
BsrDI GCAATG 2 cut(s) 981, 1419
BsrGI TGTACA 1 cut(s) 188
BsrI ACTGG 9 cut(s) 101, 203, 934, 1148, 1419, 1458, 1704, 2321, 2479
BssECI CCNNGG 6 cut(s) 175, 1543, 1891, 2190, 2446, 2702
BssNAI GTATAC 2 cut(s) 365, 1912
BssNI GRCGYC 2 cut(s) 1786, 2378
BssT1I CCWWGG 3 cut(s) 175, 1543, 1891
Bst1107I GTATAC 2 cut(s) 365, 1912
Bst2UI CCWGG 3 cut(s) 1335, 2191, 2382
Bst4CI ACNGT 5 cut(s) 759, 1129, 1211, 2365, 2591
Bst6I CTCTTC 3 cut(s) 438, 462, 1793
BstACI GRCGYC 2 cut(s) 1786, 2378
BstAPI GCANNNNNTGC 2 cut(s) 1721, 2291
BstAUI TGTACA 1 cut(s) 188
BstC8I GCNNGC 7 cut(s) 575, 1237, 1255, 1259, 1681, 2254, 2349
BstEII GGTNACC 1 cut(s) 2384
BstF5I GGATG 5 cut(s) 895, 1016, 1565, 2196, 2777
BstHHI GCGC 1 cut(s) 85
BstMAI GTCTC 5 cut(s) 776, 1397, 2044, 2630, 2821
BstMWI GCNNNNNNNGC 6 cut(s) 38, 122, 213, 445, 1721, 2291
BstNI CCWGG 3 cut(s) 1335, 2191, 2382
BstNSI RCATGY 3 cut(s) 751, 1257, 1552
BstPI GGTNACC 1 cut(s) 2384
BstSCI CCNGG 4 cut(s) 1333, 2189, 2380, 2701
BstSFI CTRYAG 5 cut(s) 12, 1281, 1722, 1857, 2127
BstSLI GKGCMC 1 cut(s) 1960
BstV1I GCAGC 4 cut(s) 393, 1285, 1477, 2494
BstV2I GAAGAC 3 cut(s) 51, 950, 1789
BstX2I RGATCY 7 cut(s) 181, 670, 838, 863, 1184, 1402, 1621
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 7 cut(s) 181, 670, 838, 863, 1184, 1402, 1621
BstZ17I GTATAC 2 cut(s) 365, 1912
Bsu15I ATCGAT 2 cut(s) 144, 1611
BsuI GTATCC 2 cut(s) 810, 2368
BsuRI GGCC 8 cut(s) 32, 41, 125, 309, 1850, 1890, 1946, 2252
BsuTUI ATCGAT 2 cut(s) 144, 1611
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 5 cut(s) 895, 1016, 1565, 2196, 2777
BtsI GCAGTG 3 cut(s) 962, 1851, 2830
BtsIMutI CAGTG 9 cut(s) 962, 995, 1125, 1216, 1463, 1711, 1851, 2736, 2830
Cac8I GCNNGC 7 cut(s) 575, 1237, 1255, 1259, 1681, 2254, 2349
CaiI CAGNNNCTG 2 cut(s) 780, 2327
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 5 cut(s) 431, 503, 794, 1445, 1589
ClaI ATCGAT 2 cut(s) 144, 1611
CseI GACGC 1 cut(s) 2386
Csp6I GTAC 7 cut(s) 189, 723, 1104, 1365, 2324, 2401, 2745
CspCI CAANNNNNGTGG 4 cut(s) 337, 372, 1162, 1197
CviQI GTAC 7 cut(s) 189, 723, 1104, 1365, 2324, 2401, 2745
DraIII CACNNNGTG 1 cut(s) 1001
EaeI YGGCCR 6 cut(s) 30, 39, 307, 1848, 1888, 1944
Eam1104I CTCTTC 3 cut(s) 438, 462, 1793
EarI CTCTTC 3 cut(s) 438, 462, 1793
Ecl136II GAGCTC 2 cut(s) 2467, 2677
Eco130I CCWWGG 3 cut(s) 175, 1543, 1891
Eco24I GRGCYC 2 cut(s) 2469, 2679
Eco31I GGTCTC 2 cut(s) 1397, 2044
Eco32I GATATC 2 cut(s) 242, 2245
Eco47I GGWCC 5 cut(s) 431, 503, 794, 1445, 1589
Eco53kI GAGCTC 2 cut(s) 2467, 2677
Eco57I CTGAAG 4 cut(s) 462, 1121, 1487, 2793
Eco91I GGTNACC 1 cut(s) 2384
EcoICRI GAGCTC 2 cut(s) 2467, 2677
EcoO109I RGGNCCY 3 cut(s) 431, 794, 1445
EcoO65I GGTNACC 1 cut(s) 2384
EcoRII CCWGG 3 cut(s) 1333, 2189, 2380
EcoRV GATATC 2 cut(s) 242, 2245
EcoT14I CCWWGG 3 cut(s) 175, 1543, 1891
EcoT38I GRGCYC 2 cut(s) 2469, 2679
ErhI CCWWGG 3 cut(s) 175, 1543, 1891
FaqI GGGAC 6 cut(s) 417, 1458, 1625, 2353, 2389, 2719
FauI CCCGC 2 cut(s) 566, 1266
FauNDI CATATG 1 cut(s) 2687
FbaI TGATCA 1 cut(s) 1408
FblI GTMKAC 2 cut(s) 364, 1911
Fnu4HI GCNGC 5 cut(s) 310, 407, 1299, 1491, 2483
FokI GGATG 5 cut(s) 902, 1003, 1572, 2183, 2764
FriOI GRGCYC 2 cut(s) 2469, 2679
Fsp4HI GCNGC 5 cut(s) 310, 407, 1299, 1491, 2483
FspBI CTAG 2 cut(s) 269, 1169
GlaI GCGC 1 cut(s) 84
GluI GCNGC 5 cut(s) 310, 407, 1299, 1491, 2483
GsuI CTGGAG 1 cut(s) 2483
HaeIII GGCC 8 cut(s) 32, 41, 125, 309, 1850, 1890, 1946, 2252
HapII CCGG 7 cut(s) 731, 954, 2396, 2538, 2702, 2748, 2820
HgaI GACGC 1 cut(s) 2386
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 2 cut(s) 1786, 2378
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 1469
HpaII CCGG 7 cut(s) 731, 954, 2396, 2538, 2702, 2748, 2820
HphI GGTGA 6 cut(s) 288, 1991, 2007, 2081, 2111, 2760
Hpy166II GTNNAC 6 cut(s) 365, 616, 1554, 1912, 1958, 2072
Hpy8I GTNNAC 6 cut(s) 365, 616, 1554, 1912, 1958, 2072
Hpy99I CGWCG 1 cut(s) 1791
HpyAV CCTTC 9 cut(s) 115, 785, 1743, 1958, 1978, 2060, 2330, 2365, 2592
HpyCH4III ACNGT 5 cut(s) 759, 1129, 1211, 2365, 2591
HpyCH4IV ACGT 3 cut(s) 23, 1786, 1954
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 122, 213, 445, 1721, 2291
HpySE526I ACGT 3 cut(s) 23, 1786, 1954
Hsp92I GRCGYC 2 cut(s) 1786, 2378
HspAI GCGC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 2395
Ksp22I TGATCA 1 cut(s) 1408
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 3 cut(s) 933, 1306, 2464
Lsp1109I GCAGC 4 cut(s) 393, 1285, 1477, 2494
LweI GCATC 6 cut(s) 1025, 1617, 1762, 2205, 2632, 2688
MaeI CTAG 2 cut(s) 269, 1169
MaeII ACGT 3 cut(s) 23, 1786, 1954
MaeIII GTNAC 7 cut(s) 109, 294, 1123, 1971, 2013, 2384, 2825
MfeI CAATTG 2 cut(s) 166, 422
MflI RGATCY 7 cut(s) 181, 670, 838, 863, 1184, 1402, 1621
MhlI GDGCHC 5 cut(s) 1675, 1960, 2469, 2679, 2736
MlsI TGGCCA 3 cut(s) 1850, 1890, 1946
MluNI TGGCCA 3 cut(s) 1850, 1890, 1946
MlyI GAGTC 4 cut(s) 616, 778, 2264, 2850
MmeI TCCRAC 1 cut(s) 2029
Mox20I TGGCCA 3 cut(s) 1850, 1890, 1946
MroI TCCGGA 1 cut(s) 2395
MroXI GAANNNNTTC 3 cut(s) 883, 1275, 1472
MscI TGGCCA 3 cut(s) 1850, 1890, 1946
MseI TTAA 6 cut(s) 686, 1739, 1824, 1869, 2408, 2471
MslI CAYNNNNRTG 3 cut(s) 1432, 1940, 2366
Msp20I TGGCCA 3 cut(s) 1850, 1890, 1946
MspI CCGG 7 cut(s) 731, 954, 2396, 2538, 2702, 2748, 2820
MspR9I CCNGG 4 cut(s) 1335, 2191, 2382, 2703
MunI CAATTG 2 cut(s) 166, 422
Mva1269I GAATGC 4 cut(s) 936, 1165, 2484, 2528
MvaI CCWGG 3 cut(s) 1335, 2191, 2382
MwoI GCNNNNNNNGC 6 cut(s) 38, 122, 213, 445, 1721, 2291
NciI CCSGG 1 cut(s) 2703
NdeI CATATG 1 cut(s) 2687
NlaIV GGNNCC 7 cut(s) 173, 183, 433, 865, 1446, 1623, 1763
NmuCI GTSAC 5 cut(s) 109, 294, 1123, 2013, 2825
NspI RCATGY 3 cut(s) 751, 1257, 1552
OliI CACNNNNGTG 2 cut(s) 1940, 2366
PaeI GCATGC 1 cut(s) 1257
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 438
PctI GAATGC 4 cut(s) 936, 1165, 2484, 2528
PdmI GAANNNNTTC 3 cut(s) 883, 1275, 1472
PfeI GAWTC 9 cut(s) 157, 277, 850, 1338, 1539, 2032, 2726, 2765, 2794
PflMI CCANNNNNTGG 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 1333
PkrI GCNGC 5 cut(s) 311, 408, 1300, 1492, 2484
PleI GAGTC 4 cut(s) 615, 777, 2264, 2849
PpsI GAGTC 4 cut(s) 615, 777, 2264, 2849
PpuMI RGGWCCY 3 cut(s) 431, 794, 1445
PscI ACATGT 1 cut(s) 747
PshBI ATTAAT 1 cut(s) 686
PsiI TTATAA 1 cut(s) 1629
Psp124BI GAGCTC 2 cut(s) 2469, 2679
Psp5II RGGWCCY 3 cut(s) 431, 794, 1445
Psp6I CCWGG 3 cut(s) 1333, 2189, 2380
PspEI GGTNACC 1 cut(s) 2384
PspGI CCWGG 3 cut(s) 1333, 2189, 2380
PspN4I GGNNCC 7 cut(s) 173, 183, 433, 865, 1446, 1623, 1763
PspPI GGNCC 5 cut(s) 431, 503, 794, 1445, 1589
PspPPI RGGWCCY 3 cut(s) 431, 794, 1445
PstI CTGCAG 2 cut(s) 1726, 2131
PstNI CAGNNNCTG 2 cut(s) 780, 2327
PsuI RGATCY 7 cut(s) 181, 670, 838, 863, 1184, 1402, 1621
RsaI GTAC 7 cut(s) 190, 724, 1105, 1366, 2325, 2402, 2746
RsaNI GTAC 7 cut(s) 189, 723, 1104, 1365, 2324, 2401, 2745
RseI CAYNNNNRTG 3 cut(s) 1432, 1940, 2366
SacI GAGCTC 2 cut(s) 2469, 2679
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 6 cut(s) 686, 1739, 1824, 1869, 2408, 2471
SatI GCNGC 5 cut(s) 310, 407, 1299, 1491, 2483
Sau96I GGNCC 5 cut(s) 431, 503, 794, 1445, 1589
ScaI AGTACT 2 cut(s) 1105, 2402
SchI GAGTC 4 cut(s) 616, 778, 2264, 2850
ScrFI CCNGG 4 cut(s) 1335, 2191, 2382, 2703
SduI GDGCHC 5 cut(s) 1675, 1960, 2469, 2679, 2736
SfaNI GCATC 6 cut(s) 1025, 1617, 1762, 2205, 2632, 2688
SfcI CTRYAG 5 cut(s) 12, 1281, 1722, 1857, 2127
SfiI GGCCNNNNNGGCC 1 cut(s) 38
SinI GGWCC 5 cut(s) 431, 503, 794, 1445, 1589
SmiMI CAYNNNNRTG 3 cut(s) 1432, 1940, 2366
SmlI CTYRAG 2 cut(s) 2605, 2618
SmoI CTYRAG 2 cut(s) 2605, 2618
SphI GCATGC 1 cut(s) 1257
SsiI CCGC 3 cut(s) 310, 573, 1259
SspI AATATT 5 cut(s) 91, 330, 1504, 1567, 2524
SspMI CTAG 2 cut(s) 269, 1169
SstI GAGCTC 2 cut(s) 2469, 2679
StyD4I CCNGG 4 cut(s) 1333, 2189, 2380, 2701
StyI CCWWGG 3 cut(s) 175, 1543, 1891
TaaI ACNGT 5 cut(s) 759, 1129, 1211, 2365, 2591
TaiI ACGT 3 cut(s) 26, 1789, 1957
TaqII GACCGA 1 cut(s) 520
TatI WGTACW 5 cut(s) 188, 722, 1103, 1364, 2400
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 9 cut(s) 157, 277, 850, 1338, 1539, 2032, 2726, 2765, 2794
Tru1I TTAA 6 cut(s) 686, 1739, 1824, 1869, 2408, 2471
Tru9I TTAA 6 cut(s) 686, 1739, 1824, 1869, 2408, 2471
TscAI CASTG 9 cut(s) 969, 1002, 1132, 1216, 1470, 1711, 1858, 2736, 2830
TseFI GTSAC 5 cut(s) 109, 294, 1123, 2013, 2825
TseI GCWGC 4 cut(s) 406, 1298, 1490, 2482
Tsp45I GTSAC 5 cut(s) 109, 294, 1123, 2013, 2825
TspDTI ATGAA 8 cut(s) 236, 290, 569, 1215, 1416, 2079, 2083, 2766
TspGWI ACGGA 2 cut(s) 2723, 2738
TspRI CASTG 9 cut(s) 969, 1002, 1132, 1216, 1470, 1711, 1858, 2736, 2830
Van91I CCANNNNNTGG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 1956
VpaK11BI GGWCC 5 cut(s) 431, 503, 794, 1445, 1589
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 4 cut(s) 495, 526, 579, 907
XceI RCATGY 3 cut(s) 751, 1257, 1552
XcmI CCANNNNNNNNNTGG 3 cut(s) 1020, 1541, 1898
XmiI GTMKAC 2 cut(s) 364, 1911
XmnI GAANNNNTTC 3 cut(s) 883, 1275, 1472
XspI CTAG 2 cut(s) 269, 1169
ZraI GACGTC 1 cut(s) 1787
ZrmI AGTACT 2 cut(s) 1105, 2402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.