Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000103

Physical Location & Seq

Genomic Coordinates Reverse (-)

57869970 .. 57873124

Gene Structure 3155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGGTATATGAAGCAACCCCCTATGCACCAAAGAACATCCTCATTACGGGTGCAGCGGGATTCATAGGCAGCCATGTCACCAACAGACTCATCAAGAACTACCCCAACTACAAGATTGTAGCTCTTGACAAGCTAGACTATTGCTCTAGCTTCAAGAACCTTCACCCTTGTAAAGCCTCACATAATTTTAAGTTCATCAAGGGAGACATTGCTTGTGCTGACCTAATCAATCACCTGTTGATGGTTGAGGAGATTGACACCATTATGCACTTTGCTGCACAGACCCATGTGGACAATTCGTTTGGGAACTCATTTGAGTTCACAAACAACAATGTTTATGGCACCCATGTGCTTCTAGAAGCTTGCAAGGTCACACAGAGAATCAAGAGGTTCATCCATGTTAGTACTGATGAGGTATATGGTGAGACTGATATGGCAACTGACATTGGAAATCCTGAGGCCTCTCAACTCCTCCCTACAAATCCTTACTCTGCCACGAAAGCCGGGGCTGAAATGTTGGTCATGGCATATCACAGATCTTATGACTTGCCTACAATAACAACTAGAGGTAACAATGTCTACGGGCCTCATCAATACCCCGAAAAGCTTATCCCGAAATTCATGCTGCTTGCTATGAAAGGCGAGAAATTGCCGATTCATGGTAATGGGTCAAATGTTAGAAGCTATTTGTATTGTGACGATGTTGCTGAGGCATTTGATGTGATTCTTCATAAGGGGGTAATTGGGCATGTGTATAACATTGGTACCAAAAAAGAAAGGTCAGTCATAGATGTGGCAGAGGATATTTGCAAGATGTTTGGTTTGGATCCAAAGGAAGCTATAGATTTTGTTCAAGATAGGCCTTTTAATGACCAAAGGTACTTCTTGGATGATCAAAAGCTGAAGAATTTGGGTTGGGAGGTGAAGACTAATTGGGAAATGGGGTTGAAGCTGACAATGGAGTGGTACACTAAGCACCCAAATTGGTGGGGAAATGTGGATGCTGCACTTCACCCCCACCCGAGTATTTCTGTGATTAATCACTGCAATGATGAAGCTTGGTTCTTTCAATACGGGTACACCAGGATGACTAGATCATGCAGTGACATTAGTAACAGCGGCGAATTAAAATTCTTGATATACGGAAGGACTGGTTGGATAGGAGGGTTATTGGGGAAGCTTTGTAAGGATGGAGGAATTGAGTTTGAGTATGGGAAGGGAAGATTGGAAGATAAGAAGTCTTTGCTAGAGGACATAACCAGAGCAACACCAACCCATGTTTTCAATGCAGCTGGAATTACTGGAAGGCCTAATGTTGATTGGTGTGAGTCACACAAGACTGAAACAATTAGGACTAATGTAGTTGGGACACTTACTTTGGCTGATGTTTGTAAGGAACAAGGTTTGTTAATGATGAATTTCGCAACCGGCTGCATATTTGAGTATGACAAGGATCACCCTCGAGGATCAGGCATTGGATTCAAGGAGGAGGACAAGCCTAATTTCACTGGTTCCTTCTATTCCAAGACCAAAGCCATGGTTGAGGAGTTGTTAAAGGAATATGACAATGTGTGCACTCTGAGAGTTAGAATGCCGATTTCATCAGACCTCAGCAACCCAAGAAACTTCATCACAAAGATCTCGCGTTACAACAAAGTGGTGAACATACCCAATAGTATGACCGTGCTTGATGAGCTCCTACCAATCTCCATTGAAATGGCTAGGAGAAACTGCCGAGGAATATGGAACTTCACCAACCCAGGAGTCATAAGCCACAATGAGATTCTAGAGATGTATAGGGATTACATTGACCCTAAGTTCAAGTGGCAAAATTTTGACCTAGAAGAACAAGCCAAGGTGATTGTAGCACCAAGGAGTAACAATGAAATGGATGCTTCAAAGCTGAAAGGGCAGTTTCCTGAATTGTTATCCATCAAAGATTCGATCAAAAAATATGTCTTCGAGGCTAACAAGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

660

Amino Acids

75.09

Weight (kDa)

6.51

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	12 - 320	2.5e-15	RmlD substrate binding domain
Epimerase	PF01370	13 - 255	3.6e-55	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	13 - 279	3.6e-19	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	14 - 317	2.1e-66	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	14 - 239	1.5e-24	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	15 - 199	2.2e-18	Male sterility protein
RmlD_sub_bind	PF04321	377 - 547	4.7e-11	RmlD substrate binding domain
Epimerase	PF01370	406 - 541	2.3e-11	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000103)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica	MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica	Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis	pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis	RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata	RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora	Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa	Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha	Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana	Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1461
Acc65I	GGTACC	1 cut(s)	764
AccB1I	GGYRCC	2 cut(s)	341, 764
AccI	GTMKAC	1 cut(s)	579
AccII	CGCG	1 cut(s)	1645
AciI	CCGC	2 cut(s)	56, 1119
AclWI	GGATC	4 cut(s)	821, 834, 1461, 1474
AcsI	RAATTY	5 cut(s)	617, 907, 1130, 1417, 1831
AcuI	CTGAAG	1 cut(s)	923
AfaI	GTAC	5 cut(s)	406, 766, 881, 968, 1079
AfiI	CCNNNNNNNGG	3 cut(s)	46, 241, 659
AgsI	TTSAA	9 cut(s)	154, 854, 949, 1070, 1285, 1483, 1715, 1822, 1899
AjnI	CCWGG	2 cut(s)	1082, 1759
AjuI	GAANNNNNNNTTGG	4 cut(s)	1138, 1170, 1208, 1240
AleI	CACNNNNGTG	1 cut(s)	347
Alw21I	GWGCWC	2 cut(s)	1577, 1698
Alw26I	GTCTC	2 cut(s)	198, 419
Alw44I	GTGCAC	1 cut(s)	1573
AlwI	GGATC	4 cut(s)	821, 834, 1461, 1474
Ama87I	CYCGRG	2 cut(s)	1021, 1461
AoxI	GGCC	4 cut(s)	459, 584, 860, 1307
ApaLI	GTGCAC	1 cut(s)	1573
ApeKI	GCWGC	7 cut(s)	53, 69, 275, 625, 1004, 1289, 1431
ApoI	RAATTY	5 cut(s)	617, 907, 1130, 1417, 1831
ArsI	GACNNNNNNTTYG	6 cut(s)	284, 316, 1360, 1392, 1941, 1973
AseI	ATTAAT	1 cut(s)	1038
Asp718I	GGTACC	1 cut(s)	764
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	505
AvaI	CYCGRG	2 cut(s)	1021, 1461
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	1577
BaeI	ACNNNNGTAYC	2 cut(s)	748, 781
BamHI	GGATCC	1 cut(s)	826
BanI	GGYRCC	2 cut(s)	341, 764
BanII	GRGCYC	1 cut(s)	1698
BbsI	GAAGAC	2 cut(s)	932, 1951
Bbv12I	GWGCWC	2 cut(s)	1577, 1698
BbvCI	CCTCAGC	2 cut(s)	708, 1610
BbvI	GCAGC	7 cut(s)	65, 81, 262, 612, 991, 1301, 1418
BccI	CCATC	3 cut(s)	235, 1184, 1940
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	1084, 1761
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	198, 419
BfaI	CTAG	9 cut(s)	134, 147, 356, 564, 1092, 1247, 1722, 1787, 1841
BfmI	CTRYAG	1 cut(s)	840
BglII	AGATCT	2 cut(s)	536, 1638
BisI	GCNGC	8 cut(s)	54, 70, 276, 626, 1005, 1120, 1290, 1432
BlsI	GCNGC	8 cut(s)	55, 71, 277, 627, 1006, 1121, 1291, 1433
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	3 cut(s)	505, 1084, 1761
BmeT110I	CYCGRG	2 cut(s)	1021, 1461
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	4 cut(s)	343, 766, 828, 1513
BmrFI	CCNGG	3 cut(s)	505, 1084, 1761
BmsI	GCATC	2 cut(s)	991, 1882
BpiI	GAAGAC	2 cut(s)	932, 1951
Bpu10I	CCTNAGC	2 cut(s)	708, 1610
BpuMI	CCSGG	1 cut(s)	505
BsaJI	CCNNGG	6 cut(s)	504, 1536, 1735, 1759, 1854, 1871
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 241, 659
Bse118I	RCCGGY	1 cut(s)	1427
Bse1I	ACTGG	3 cut(s)	1156, 1306, 1513
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	2 cut(s)	207, 1054
BseBI	CCWGG	2 cut(s)	1084, 1761
BseDI	CCNNGG	6 cut(s)	504, 1536, 1735, 1759, 1854, 1871
BseGI	GGATG	7 cut(s)	36, 393, 895, 1006, 1092, 1195, 1897
BseLI	CCNNNNNNNGG	3 cut(s)	46, 241, 659
BseMI	GCAATG	2 cut(s)	207, 1054
BseMII	CTCAG	4 cut(s)	447, 699, 1571, 1624
BseNI	ACTGG	3 cut(s)	1156, 1306, 1513
BseRI	GAGGAG	4 cut(s)	263, 461, 1502, 1559
BseSI	GKGCMC	1 cut(s)	1577
BseXI	GCAGC	7 cut(s)	65, 81, 262, 612, 991, 1301, 1418
BsgI	GTGCAG	3 cut(s)	72, 261, 990
Bsh1236I	CGCG	1 cut(s)	1645
BshFI	GGCC	4 cut(s)	461, 586, 862, 1309
BshNI	GGYRCC	2 cut(s)	341, 764
BsiHKAI	GWGCWC	2 cut(s)	1577, 1698
BsiHKCI	CYCGRG	2 cut(s)	1021, 1461
BsiSI	CCGG	2 cut(s)	504, 1428
BslFI	GGGAC	1 cut(s)	1381
BslI	CCNNNNNNNGG	3 cut(s)	46, 241, 659
BsmAI	GTCTC	2 cut(s)	198, 419
BsmFI	GGGAC	1 cut(s)	1381
BsmI	GAATGC	1 cut(s)	1596
BsnI	GGCC	4 cut(s)	461, 586, 862, 1309
BsoBI	CYCGRG	2 cut(s)	1021, 1461
Bsp1286I	GDGCHC	2 cut(s)	1577, 1698
Bsp143I	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
Bsp19I	CCATGG	1 cut(s)	1536
BspACI	CCGC	2 cut(s)	56, 1119
BspANI	GGCC	4 cut(s)	461, 586, 862, 1309
BspCNI	CTCAG	4 cut(s)	448, 700, 1572, 1623
BspFNI	CGCG	1 cut(s)	1645
BspLI	GGNNCC	4 cut(s)	343, 766, 828, 1513
BspPI	GGATC	4 cut(s)	821, 834, 1461, 1474
BspT107I	GGYRCC	2 cut(s)	341, 764
BsrDI	GCAATG	2 cut(s)	207, 1054
BsrFI	RCCGGY	1 cut(s)	1427
BsrI	ACTGG	3 cut(s)	1156, 1306, 1513
BssAI	RCCGGY	1 cut(s)	1427
BssECI	CCNNGG	6 cut(s)	504, 1536, 1735, 1759, 1854, 1871
BssMI	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
BssT1I	CCWWGG	3 cut(s)	1536, 1854, 1871
Bst2UI	CCWGG	2 cut(s)	1084, 1761
Bst4CI	ACNGT	1 cut(s)	1684
BstC8I	GCNNGC	2 cut(s)	364, 630
BstDEI	CTNAG	6 cut(s)	456, 708, 972, 1580, 1610, 1815
BstDSI	CCRYGG	1 cut(s)	1536
BstF5I	GGATG	7 cut(s)	36, 393, 895, 1006, 1092, 1195, 1897
BstFNI	CGCG	1 cut(s)	1645
BstKTI	GATC	8 cut(s)	539, 829, 895, 1097, 1456, 1469, 1641, 1947
BstMAI	GTCTC	2 cut(s)	198, 419
BstMBI	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 1693, 1909
BstNI	CCWGG	2 cut(s)	1084, 1761
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	3 cut(s)	503, 1082, 1759
BstSFI	CTRYAG	1 cut(s)	840
BstSLI	GKGCMC	1 cut(s)	1577
BstUI	CGCG	1 cut(s)	1645
BstV1I	GCAGC	7 cut(s)	65, 81, 262, 612, 991, 1301, 1418
BstV2I	GAAGAC	2 cut(s)	932, 1951
BstX2I	RGATCY	3 cut(s)	536, 826, 1638
BstXI	CCANNNNNNTGG	3 cut(s)	987, 1537, 1717
BstYI	RGATCY	3 cut(s)	536, 826, 1638
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	461, 586, 862, 1309
BtgI	CCRYGG	1 cut(s)	1536
BtsCI	GGATG	7 cut(s)	36, 393, 895, 1006, 1092, 1195, 1897
BtsI	GCAGTG	2 cut(s)	1042, 1108
BtsIMutI	CAGTG	3 cut(s)	1042, 1108, 1506
Cac8I	GCNNGC	2 cut(s)	364, 630
Cfr10I	RCCGGY	1 cut(s)	1427
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	5 cut(s)	405, 765, 880, 967, 1078
CviQI	GTAC	5 cut(s)	405, 765, 880, 967, 1078
DdeI	CTNAG	6 cut(s)	456, 708, 972, 1580, 1610, 1815
DpnI	GATC	8 cut(s)	538, 828, 894, 1096, 1455, 1468, 1640, 1946
DpnII	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
Ecl136II	GAGCTC	1 cut(s)	1696
Eco130I	CCWWGG	3 cut(s)	1536, 1854, 1871
Eco147I	AGGCCT	3 cut(s)	461, 862, 1309
Eco24I	GRGCYC	1 cut(s)	1698
Eco53kI	GAGCTC	1 cut(s)	1696
Eco57I	CTGAAG	1 cut(s)	923
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	2 cut(s)	1021, 1461
EcoICRI	GAGCTC	1 cut(s)	1696
EcoRII	CCWGG	2 cut(s)	1082, 1759
EcoT14I	CCWWGG	3 cut(s)	1536, 1854, 1871
EcoT38I	GRGCYC	1 cut(s)	1698
ErhI	CCWWGG	3 cut(s)	1536, 1854, 1871
FaqI	GGGAC	1 cut(s)	1381
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	8 cut(s)	54, 70, 276, 626, 1005, 1120, 1290, 1432
FokI	GGATG	7 cut(s)	23, 380, 902, 1013, 1099, 1202, 1904
FriOI	GRGCYC	1 cut(s)	1698
Fsp4HI	GCNGC	8 cut(s)	54, 70, 276, 626, 1005, 1120, 1290, 1432
FspBI	CTAG	9 cut(s)	134, 147, 356, 564, 1092, 1247, 1722, 1787, 1841
GluI	GCNGC	8 cut(s)	54, 70, 276, 626, 1005, 1120, 1290, 1432
HaeIII	GGCC	4 cut(s)	461, 586, 862, 1309
HapII	CCGG	2 cut(s)	504, 1428
HindIII	AAGCTT	4 cut(s)	360, 605, 1056, 1178
HpaII	CCGG	2 cut(s)	504, 1428
Hpy166II	GTNNAC	7 cut(s)	292, 321, 580, 969, 1080, 1575, 1663
Hpy188I	TCNGA	2 cut(s)	1581, 1606
Hpy8I	GTNNAC	7 cut(s)	292, 321, 580, 969, 1080, 1575, 1663
HpyAV	CCTTC	5 cut(s)	170, 1140, 1210, 1299, 1525
HpyCH4III	ACNGT	1 cut(s)	1684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 1693, 1909
HpyF3I	CTNAG	6 cut(s)	456, 708, 972, 1580, 1610, 1815
KpnI	GGTACC	1 cut(s)	768
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
LmnI	GCTCC	1 cut(s)	1701
Lsp1109I	GCAGC	7 cut(s)	65, 81, 262, 612, 991, 1301, 1418
LweI	GCATC	2 cut(s)	991, 1882
MaeI	CTAG	9 cut(s)	134, 147, 356, 564, 1092, 1247, 1722, 1787, 1841
MaeIII	GTNAC	9 cut(s)	76, 370, 569, 695, 1103, 1112, 1329, 1646, 1877
MalI	GATC	8 cut(s)	538, 828, 894, 1096, 1455, 1468, 1640, 1946
MboI	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
MboII	GAAGA	7 cut(s)	719, 916, 937, 1233, 1241, 1856, 1951
MflI	RGATCY	3 cut(s)	536, 826, 1638
MhlI	GDGCHC	2 cut(s)	1577, 1698
MlyI	GAGTC	3 cut(s)	81, 1337, 1773
MmeI	TCCRAC	1 cut(s)	1136
MseI	TTAA	6 cut(s)	189, 867, 1038, 1127, 1409, 1553
MslI	CAYNNNNRTG	7 cut(s)	263, 347, 663, 791, 1047, 1085, 1715
MspA1I	CMGCKG	3 cut(s)	56, 1119, 1292
MspI	CCGG	2 cut(s)	504, 1428
MspR9I	CCNGG	3 cut(s)	505, 1084, 1761
Mva1269I	GAATGC	1 cut(s)	1596
MvaI	CCWGG	2 cut(s)	1084, 1761
MvnI	CGCG	1 cut(s)	1645
MwoI	GCNNNNNNNGC	3 cut(s)	500, 1693, 1909
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	1536
NdeII	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
NlaIV	GGNNCC	4 cut(s)	343, 766, 828, 1513
NmeAIII	GCCGAG	1 cut(s)	1760
NmuCI	GTSAC	5 cut(s)	76, 370, 695, 1103, 1329
NspI	RCATGY	1 cut(s)	752
OliI	CACNNNNGTG	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	1461
PceI	AGGCCT	3 cut(s)	461, 862, 1309
PctI	GAATGC	1 cut(s)	1596
PfeI	GAWTC	7 cut(s)	60, 381, 655, 724, 1479, 1783, 1940
PkrI	GCNGC	8 cut(s)	55, 71, 277, 627, 1006, 1121, 1291, 1433
PleI	GAGTC	3 cut(s)	81, 1336, 1772
PpsI	GAGTC	3 cut(s)	81, 1336, 1772
PshBI	ATTAAT	1 cut(s)	1038
Psp124BI	GAGCTC	1 cut(s)	1698
Psp6I	CCWGG	2 cut(s)	1082, 1759
PspGI	CCWGG	2 cut(s)	1082, 1759
PspN4I	GGNNCC	4 cut(s)	343, 766, 828, 1513
PspPI	GGNCC	1 cut(s)	584
PspXI	VCTCGAGB	1 cut(s)	1461
PsuI	RGATCY	3 cut(s)	536, 826, 1638
PvuII	CAGCTG	1 cut(s)	1292
RsaI	GTAC	5 cut(s)	406, 766, 881, 968, 1079
RsaNI	GTAC	5 cut(s)	405, 765, 880, 967, 1078
RseI	CAYNNNNRTG	7 cut(s)	263, 347, 663, 791, 1047, 1085, 1715
SacI	GAGCTC	1 cut(s)	1698
SaqAI	TTAA	6 cut(s)	189, 867, 1038, 1127, 1409, 1553
SatI	GCNGC	8 cut(s)	54, 70, 276, 626, 1005, 1120, 1290, 1432
Sau3AI	GATC	8 cut(s)	536, 826, 892, 1094, 1453, 1466, 1638, 1944
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	3 cut(s)	81, 1337, 1773
ScrFI	CCNGG	3 cut(s)	505, 1084, 1761
SduI	GDGCHC	2 cut(s)	1577, 1698
SfaNI	GCATC	2 cut(s)	991, 1882
SfcI	CTRYAG	1 cut(s)	840
Sfr274I	CTCGAG	1 cut(s)	1461
SlaI	CTCGAG	1 cut(s)	1461
SmiMI	CAYNNNNRTG	7 cut(s)	263, 347, 663, 791, 1047, 1085, 1715
SmlI	CTYRAG	1 cut(s)	1461
SmoI	CTYRAG	1 cut(s)	1461
SseBI	AGGCCT	3 cut(s)	461, 862, 1309
SsiI	CCGC	2 cut(s)	56, 1119
SspMI	CTAG	9 cut(s)	134, 147, 356, 564, 1092, 1247, 1722, 1787, 1841
SstI	GAGCTC	1 cut(s)	1698
StuI	AGGCCT	3 cut(s)	461, 862, 1309
StyD4I	CCNGG	3 cut(s)	503, 1082, 1759
StyI	CCWWGG	3 cut(s)	1536, 1854, 1871
TaaI	ACNGT	1 cut(s)	1684
TaqI	TCGA	3 cut(s)	1462, 1943, 1962
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	1122
TfiI	GAWTC	7 cut(s)	60, 381, 655, 724, 1479, 1783, 1940
Tru1I	TTAA	6 cut(s)	189, 867, 1038, 1127, 1409, 1553
Tru9I	TTAA	6 cut(s)	189, 867, 1038, 1127, 1409, 1553
TscAI	CASTG	3 cut(s)	1049, 1108, 1513
TseFI	GTSAC	5 cut(s)	76, 370, 695, 1103, 1329
TseI	GCWGC	7 cut(s)	53, 69, 275, 625, 1004, 1289, 1431
Tsp45I	GTSAC	5 cut(s)	76, 370, 695, 1103, 1329
TspGWI	ACGGA	1 cut(s)	1158
TspRI	CASTG	3 cut(s)	1049, 1108, 1513
VneI	GTGCAC	1 cut(s)	1573
VspI	ATTAAT	1 cut(s)	1038
XapI	RAATTY	5 cut(s)	617, 907, 1130, 1417, 1831
XbaI	TCTAGA	2 cut(s)	355, 1786
XceI	RCATGY	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	1461
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	9 cut(s)	134, 147, 356, 564, 1092, 1247, 1722, 1787, 1841
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.