Rorug06G0256100

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
40230175 .. 40234338
4164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0256100.1

Sequence Viewer

Length: 3261 bp
ATGGCTCTTGCACTTGCAACAACTATCTCTCCGAATACTTGTCCAACTAGTTATCATGTGTTCTTGAGTTTCAGGGGTGATACTCGCAAGACTTTTACTGACCACCTCTACACAGCCTTTGTCAATTCAGGCTTTCGTACGTTTCGAGATGACGACGAACTTCCAAGGGGACATGATATCAAACCAGAACTGCGGAAAGCCATCGAGCAGTCACGAAGTTCTGTTATTGTGTTTTCAAAAGACTATGCGTCTTCCGGATGGTGCCTTGATGAGCTTGTGATGATCATGGAACGCAAGAGGACCTGCGATCACATAGTTTTACCTGTCTTTTACGATGTCGATCCATCCCAAGTAAGGAAGCAAACAGGAAGTCTTGCAAAAGCATTTGCTAGACACGAAAGAAATCATTCCTTGAAGGACAAGGTGAAGCGATGGAGGGCGGCACTCACAGAAGTTGCAGATCTAGCAGGAATGGTCTTGCAAAATGAAGCCGACGGGCACGAGTCTAAGTTTATCAAGAAAATTGTAAGGGTAATGAAAGATAAACTAAGGCGCATTCCCCTAAGTGTTGAACCCCACCTAATTGGAGTAGATTCTCAAACGGAAGGCATCAATTTATGGTTACAAGATGGATCAGCTGATGTTGGCATACTTTTAATTCATGGGATGCGTGGGATAGGAAAATCAACCATAGCGAAATTTGTTTACAACTCAAACTTTCAAAAATTTGAGAGATGCAGTTTCCTTGAAAATGTCAGAGAAGTTTCAGAACAATCAAATGGCTTGCTTCGGCTACAAAAACAACTTCTTAGTGATATTTTGGGTGCAAATGAAGTGAAAATACGCAATATTAGTGAAGGGATGGCTAAGATTGAAGATTCTATTAGCTCTGAAAGAGTTTTTCTTGTTCTCGATGATGTTGATCATGTGGACCAATTAGCTGCATTCCTGAGGATGCAAAATCGGTTTCATCCAGGAAGTAAGATCATCATAACAAGTACCTGTGCGGGATTGTTGGGAGCTCACTGCCAATTTGCTAAGTTGAATGAGGTTAGAATTCTAGGTGAGGATGATTCATTAGCGCTCTTTAGTTGGCATGCTTTTGGACAGGACCATCCCATTGGAAGTTATACTGATTACTCGAAAAGGGTAATAGATCATTGTGGAGGACTTCCACTAGCTCTTAAAGTTTTAGGTTCTTCTTTATCAGGAAAGAATCTAACTGTCTGGGAAAGTGCATTGAACAAACTGGAAGCTATTCCAAATGGTGAAATAATGAAGAAACTCAAAATAAGCTATGATTCCCTACAAGATGATCATGACAGAAACTTATTCCTTCATATTGCATTCTTTTTCATCGGAATGGAGAAAGGTATCATTGTTACAATCTTAGATGACTGTGATTTCTTCACAGAGGTTGGCATTCAAAATCTCATTGATAGATGTTTGGTAACCACTGATAAAGATAACAAGCTGGTGCAAATGCATGACATGATTCGTGACATGGGAAGAGAAATTGTTCGTCTAGAATCCAAGGAGCCAGAACGACGTAGTCGAGTATGGCATCATAAGGATTCTTTCAAAATATTGTCCGAAAATATTGGCACCCAAACAATTGAAGGACTTGTTCTCAACATGCAAATGCACCCTTCGAGAAATTCAAGTAAGGTAGTATTGGAAACCAATGCATTTGCAAGGATGCACAAACTAAGACTCCTCCAACTCAATCATGTGCAGCTCAGTGGACGCTACGAAGAATTTCCTGCAGGACTAAGATGGCTTTGTTGGATTAAATTTCCTTTAGCTTCCTTGCCCGCTGATTTTCCGTTGGAGAGCCTTGTTGCTCTTGCAATGTGTTATAGTAGTTTGAGACGACTTTGGAGGGGAACAAAGTATCTCCCATCACTAAAAATCTTAAATCTCAGCCACTCTCATGACTTTACTGAAATATCTGACTTCTCATGTATCCCTAATCTAGAGAGACTCATTCTTGAAGATTGTGCAAGATTGATAAATGTTCATGAATCCATCGGAGTCCTGAAGAGGCTAATTTATTTGAGTATGAAAGATTGCAAAAATCTTAGGAAGCTTCCGGAGAACATTTCTATCCTAACCTTCCTTGAAACACTTAATATCTCTGGTTGCTCAAATCTTAGAGAGTTTCCGACAGAAATGATGAAGATACAGTCGTTGAAAGTGTTTCAAGCAGATGGAGTTCCAATACATCGGTTACTAGTCACTACCGCCAGGGAGGTGGTACTGTGTCCGACTGTAAAACTTTCTTGGGCTTCTTATCTACCACGGAATTTAGTAATCTTGAGTCTAAAAAACTGCAATCTTTTGGATGATGATTTTCCTAGTGATGTTGCAAATCTAGTGTCGTTGCAAAAATTGGATCTCAGCAGGAACCCAATTTGTAGGCTGCCGGATTGCATCACAGGTGCTACCGGCCTCCAATATCTTAATTTGGAGCATTGTACGAAGCTCAAATCACTTCTATGGCAATCAACAAAATTAGTTGAATTGAAGCTGTTCGGGTGCGCCTCATTGGAAAATATAAGATATCAACCTTTACCGATGAGACTTGCTCATGGTTCGAACTCTAATCTTGTTAAGTTTCAGGATTTTTTTATGTTGGAACCCATTGAAAGAGTTGATAAAGAAATGCTAAAAGTTTTGAGCTTAGGAAACCTGGAATCCCTGGAAAACTTTGTGATGGACACAGTATCTGATGAAACCTCTGTATGGAAAGGAAGAATGCATCCTCTGCAGGGACTGTACGAAGATGGTGCATTCACCACATTCCTTCCTGGAAACGAAATTCCAGGCCAGTTCAGCTATAGAAGCAGAGGGTCCTCTGTATCCGTTACTGTGCCTTTACTTCCCAATCTCAATATACGAGGGCTGAATATCTTCTCGGTCATAGCACAATCCAACACCAATGATTCTGATCCTATGACCAATACTGTGTATATTGACGGATTGGAATGTACCTATCCTAATTTAGGATTGAAAACTGATCGCAAGCCTAACACAAGACTGGAAACTGATATCAGTCTGAACTCAGGATCGAAACACTCTTGCAATCCTATCAGACAAGTGGACAAACAGACAAGCATTGCAAAGGATAACCAGACAAAAGAATCTCTCCTAACCAAAAGTCACATGTCAAGACTGCAGCTTTGCTGCACCCAGCTCACAAGCGTGACTGTGCTTACAAGCCATACAAGAGATAAACCTTCACTACATAATGCCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1086

Amino Acids

122.92

Weight (kDa)

8.15

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 189 1.2e-50 TIR domain
TIR_2 PF13676 20 - 116 1.7e-14 TIR domain
NB-ARC PF00931 202 - 369 1.1e-14 NB-ARC domain
WHD_ROQ1 PF23282 440 - 510 2e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 646 - 737 2.7e-08 Leucine-rich repeat region
LRR_13 PF23286 656 - 857 3.2e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_8 PF13855 768 - 826 7.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AccB1I GGYRCC 2 cut(s) 261, 1604
AccIII TCCGGA 2 cut(s) 254, 2092
AciI CCGC 5 cut(s) 193, 440, 1007, 1815, 2244
AclWI GGATC 5 cut(s) 335, 640, 2403, 2945, 3076
AcsI RAATTY 8 cut(s) 698, 725, 1056, 1657, 1757, 1793, 2305, 2820
AcuI CTGAAG 1 cut(s) 2060
AfaI GTAC 6 cut(s) 139, 1000, 2259, 2479, 2780, 2992
AfeI AGCGCT 1 cut(s) 1083
AfiI CCNNNNNNNGG 4 cut(s) 354, 2745, 2771, 3005
AflIII ACRYGT 1 cut(s) 3165
AhdI GACNNNNNGTC 1 cut(s) 247
AhlI ACTAGT 2 cut(s) 47, 2233
AjnI CCWGG 6 cut(s) 973, 2246, 2691, 2700, 2809, 2824
AleI CACNNNNGTG 1 cut(s) 3203
Alw21I GWGCWC 1 cut(s) 1024
Alw26I GTCTC 3 cut(s) 1864, 1975, 2575
AlwI GGATC 5 cut(s) 335, 640, 2403, 2945, 3076
AlwNI CAGNNNCTG 2 cut(s) 2729, 2776
Aor13HI TCCGGA 2 cut(s) 254, 2092
Aor51HI AGCGCT 1 cut(s) 1083
AoxI GGCC 2 cut(s) 2449, 2827
ApeKI GCWGC 5 cut(s) 941, 1735, 2422, 3178, 3186
ApoI RAATTY 8 cut(s) 698, 725, 1056, 1657, 1757, 1793, 2305, 2820
ArsI GACNNNNNNTTYG 6 cut(s) 355, 387, 2363, 2395, 3165, 3197
Asp700I GAANNNNTTC 6 cut(s) 406, 1257, 1518, 1758, 2531, 2912
AspLEI GCGC 3 cut(s) 555, 1084, 2543
AspS9I GGNCC 4 cut(s) 300, 931, 1111, 2853
AsuHPI GGTGA 5 cut(s) 89, 436, 1076, 1280, 2788
AsuII TTCGAA 1 cut(s) 2597
AvaII GGWCC 4 cut(s) 300, 931, 1111, 2853
AxyI CCTNAGG 1 cut(s) 950
BaeGI GKGCMC 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 2174, 2207
BanI GGYRCC 2 cut(s) 261, 1604
BanII GRGCYC 1 cut(s) 1024
BarI GAAGNNNNNNTAC 2 cut(s) 825, 857
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 1024
BbvI GCAGC 5 cut(s) 928, 1747, 2409, 3173, 3190
BcgI CGANNNNNNTGC 2 cut(s) 2771, 2805
BciT130I CCWGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
BciVI GTATCC 2 cut(s) 1976, 2872
BclI TGATCA 3 cut(s) 282, 922, 1315
BcoDI GTCTC 3 cut(s) 1864, 1975, 2575
BcuI ACTAGT 2 cut(s) 47, 2233
BfmI CTRYAG 4 cut(s) 1764, 2768, 2839, 3176
BfoI RGCGCY 1 cut(s) 1085
BfuAI ACCTGC 1 cut(s) 311
BfuI GTATCC 2 cut(s) 1976, 2872
BglII AGATCT 1 cut(s) 460
BisI GCNGC 6 cut(s) 441, 942, 1736, 2423, 3179, 3187
BlsI GCNGC 6 cut(s) 442, 943, 1737, 2424, 3180, 3188
Bme1390I CCNGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
Bme18I GGWCC 4 cut(s) 300, 931, 1111, 2853
BmeRI GACNNNNNGTC 1 cut(s) 247
BmgT120I GGNCC 4 cut(s) 300, 931, 1111, 2853
BmiI GGNNCC 6 cut(s) 263, 1539, 1606, 2408, 2640, 2854
BmrFI CCNGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
BmsI GCATC 8 cut(s) 618, 657, 725, 945, 1573, 1689, 2442, 2770
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 2572, 2604
Bpu10I CCTNAGC 1 cut(s) 2683
Bpu14I TTCGAA 1 cut(s) 2597
BpuEI CTTGAG 2 cut(s) 85, 2338
BsaBI GATNNNNATC 3 cut(s) 339, 921, 2949
BsaJI CCNNGG 5 cut(s) 164, 1533, 2247, 2300, 2700
BsaWI WCCGGW 2 cut(s) 254, 2092
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 1698, 1728
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 2745, 2771, 3005
Bse118I RCCGGY 1 cut(s) 2447
Bse1I ACTGG 3 cut(s) 1254, 2830, 3045
Bse21I CCTNAGG 1 cut(s) 950
Bse3DI GCAATG 2 cut(s) 1857, 3117
Bse8I GATNNNNATC 3 cut(s) 339, 921, 2949
BseAI TCCGGA 2 cut(s) 254, 2092
BseBI CCWGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
BseDI CCNNGG 5 cut(s) 164, 1533, 2247, 2300, 2700
BseJI GATNNNNATC 3 cut(s) 339, 921, 2949
BseLI CCNNNNNNNGG 4 cut(s) 354, 2745, 2771, 3005
BseMI GCAATG 2 cut(s) 1857, 3117
BseMII CTCAG 5 cut(s) 941, 1753, 1936, 2413, 3078
BseNI ACTGG 3 cut(s) 1254, 2830, 3045
BseRI GAGGAG 1 cut(s) 1706
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 5 cut(s) 928, 1747, 2409, 3173, 3190
BseYI CCCAGC 1 cut(s) 3192
BsgI GTGCAG 2 cut(s) 1754, 3172
BshFI GGCC 2 cut(s) 2451, 2829
BshNI GGYRCC 2 cut(s) 261, 1604
BsiHKAI GWGCWC 1 cut(s) 1024
BsiSI CCGG 4 cut(s) 255, 2093, 2426, 2448
BsiWI CGTACG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 183, 2787
BslI CCNNNNNNNGG 4 cut(s) 354, 2745, 2771, 3005
BsmAI GTCTC 3 cut(s) 1864, 1975, 2575
BsmBI CGTCTC 1 cut(s) 1864
BsmFI GGGAC 2 cut(s) 183, 2787
BsmI GAATGC 6 cut(s) 555, 944, 1346, 1422, 2763, 2792
BsnI GGCC 2 cut(s) 2451, 2829
Bsp119I TTCGAA 1 cut(s) 2597
Bsp1286I GDGCHC 2 cut(s) 501, 1024
Bsp13I TCCGGA 2 cut(s) 254, 2092
BspACI CCGC 5 cut(s) 193, 440, 1007, 1815, 2244
BspANI GGCC 2 cut(s) 2451, 2829
BspCNI CTCAG 5 cut(s) 942, 1752, 1935, 2412, 3077
BspEI TCCGGA 2 cut(s) 254, 2092
BspHI TCATGA 3 cut(s) 1318, 1933, 2020
BspLI GGNNCC 6 cut(s) 263, 1539, 1606, 2408, 2640, 2854
BspMAI CTGCAG 3 cut(s) 1768, 2772, 3180
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 5 cut(s) 335, 640, 2403, 2945, 3076
BspT104I TTCGAA 1 cut(s) 2597
BspT107I GGYRCC 2 cut(s) 261, 1604
BsrDI GCAATG 2 cut(s) 1857, 3117
BsrFI RCCGGY 1 cut(s) 2447
BsrI ACTGG 3 cut(s) 1254, 2830, 3045
BssAI RCCGGY 1 cut(s) 2447
BssECI CCNNGG 5 cut(s) 164, 1533, 2247, 2300, 2700
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 164, 1533
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
Bst6I CTCTTC 2 cut(s) 1504, 2036
BstAPI GCANNNNNTGC 1 cut(s) 2767
BstBI TTCGAA 1 cut(s) 2597
BstC8I GCNNGC 4 cut(s) 785, 1098, 1815, 3026
BstDSI CCRYGG 1 cut(s) 2300
BstEII GGTNACC 1 cut(s) 1450
BstENI CCTNNNNNAGG 1 cut(s) 3003
BstH2I RGCGCY 1 cut(s) 1085
BstHHI GCGC 3 cut(s) 555, 1084, 2543
BstMAI GTCTC 3 cut(s) 1864, 1975, 2575
BstMWI GCNNNNNNNGC 4 cut(s) 464, 2767, 2835, 2844
BstNI CCWGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
BstNSI RCATGY 3 cut(s) 1100, 1639, 3169
BstPI GGTNACC 1 cut(s) 1450
BstSCI CCNGG 6 cut(s) 973, 2246, 2691, 2700, 2809, 2824
BstSFI CTRYAG 4 cut(s) 1764, 2768, 2839, 3176
BstSLI GKGCMC 1 cut(s) 501
BstV1I GCAGC 5 cut(s) 928, 1747, 2409, 3173, 3190
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 2 cut(s) 460, 2395
BstXI CCANNNNNNTGG 3 cut(s) 584, 1121, 2254
BstYI RGATCY 2 cut(s) 460, 2395
Bsu36I CCTNAGG 1 cut(s) 950
BsuI GTATCC 2 cut(s) 1976, 2872
BsuRI GGCC 2 cut(s) 2451, 2829
BtgI CCRYGG 1 cut(s) 2300
BtgZI GCGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 3 cut(s) 1024, 1455, 1747
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 4 cut(s) 785, 1098, 1815, 3026
CaiI CAGNNNCTG 2 cut(s) 2729, 2776
CciI TCATGA 3 cut(s) 1318, 1933, 2020
CfoI GCGC 3 cut(s) 555, 1084, 2543
Cfr10I RCCGGY 1 cut(s) 2447
Cfr13I GGNCC 4 cut(s) 300, 931, 1111, 2853
CseI GACGC 2 cut(s) 237, 1755
Csp6I GTAC 6 cut(s) 138, 999, 2258, 2478, 2779, 2991
CviQI GTAC 6 cut(s) 138, 999, 2258, 2478, 2779, 2991
DriI GACNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 1504, 2036
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 2 cut(s) 1504, 2036
Ecl136II GAGCTC 1 cut(s) 1022
Eco130I CCWWGG 2 cut(s) 164, 1533
Eco24I GRGCYC 1 cut(s) 1024
Eco32I GATATC 3 cut(s) 178, 2564, 3052
Eco47I GGWCC 4 cut(s) 300, 931, 1111, 2853
Eco47III AGCGCT 1 cut(s) 1083
Eco53kI GAGCTC 1 cut(s) 1022
Eco57I CTGAAG 1 cut(s) 2060
Eco81I CCTNAGG 1 cut(s) 950
Eco91I GGTNACC 1 cut(s) 1450
EcoICRI GAGCTC 1 cut(s) 1022
EcoNI CCTNNNNNAGG 1 cut(s) 3003
EcoO109I RGGNCCY 2 cut(s) 300, 2853
EcoO65I GGTNACC 1 cut(s) 1450
EcoRI GAATTC 1 cut(s) 1056
EcoRII CCWGG 6 cut(s) 973, 2246, 2691, 2700, 2809, 2824
EcoRV GATATC 3 cut(s) 178, 2564, 3052
EcoT14I CCWWGG 2 cut(s) 164, 1533
EcoT22I ATGCAT 3 cut(s) 1488, 1690, 2763
EcoT38I GRGCYC 1 cut(s) 1024
ErhI CCWWGG 2 cut(s) 164, 1533
Esp3I CGTCTC 1 cut(s) 1864
FaqI GGGAC 2 cut(s) 183, 2787
FauI CCCGC 2 cut(s) 1000, 1822
FbaI TGATCA 3 cut(s) 282, 922, 1315
Fnu4HI GCNGC 6 cut(s) 441, 942, 1736, 2423, 3179, 3187
FriOI GRGCYC 1 cut(s) 1024
Fsp4HI GCNGC 6 cut(s) 441, 942, 1736, 2423, 3179, 3187
GlaI GCGC 3 cut(s) 554, 1083, 2542
GluI GCNGC 6 cut(s) 441, 942, 1736, 2423, 3179, 3187
GsaI CCCAGC 1 cut(s) 3196
HaeII RGCGCY 1 cut(s) 1085
HaeIII GGCC 2 cut(s) 2451, 2829
HapII CCGG 4 cut(s) 255, 2093, 2426, 2448
HgaI GACGC 2 cut(s) 237, 1755
HhaI GCGC 3 cut(s) 555, 1084, 2543
Hin6I GCGC 3 cut(s) 553, 1082, 2541
HinP1I GCGC 3 cut(s) 553, 1082, 2541
HindIII AAGCTT 1 cut(s) 2087
HpaII CCGG 4 cut(s) 255, 2093, 2426, 2448
HphI GGTGA 5 cut(s) 89, 436, 1076, 1280, 2788
Hpy166II GTNNAC 4 cut(s) 706, 931, 1745, 3103
Hpy8I GTNNAC 4 cut(s) 706, 931, 1745, 3103
Hpy99I CGWCG 3 cut(s) 158, 497, 1551
HpyAV CCTTC 9 cut(s) 409, 599, 851, 1346, 1613, 1659, 2125, 2816, 3249
HpyCH4IV ACGT 2 cut(s) 140, 1549
HpyF10VI GCNNNNNNNGC 4 cut(s) 464, 2767, 2835, 2844
HpySE526I ACGT 2 cut(s) 140, 1549
HspAI GCGC 3 cut(s) 553, 1082, 2541
Kpn2I TCCGGA 2 cut(s) 254, 2092
Ksp22I TGATCA 3 cut(s) 282, 922, 1315
LmnI GCTCC 3 cut(s) 1019, 1537, 2470
Lsp1109I GCAGC 5 cut(s) 928, 1747, 2409, 3173, 3190
LweI GCATC 8 cut(s) 618, 657, 725, 945, 1573, 1689, 2442, 2770
MaeII ACGT 2 cut(s) 140, 1549
MfeI CAATTG 1 cut(s) 1614
MflI RGATCY 2 cut(s) 460, 2395
MhlI GDGCHC 2 cut(s) 501, 1024
MlyI GAGTC 5 cut(s) 512, 1707, 1977, 2043, 2329
MmeI TCCRAC 8 cut(s) 68, 1744, 1766, 1809, 2189, 2291, 2616, 2958
Mph1103I ATGCAT 3 cut(s) 1488, 1690, 2763
MroI TCCGGA 2 cut(s) 254, 2092
MroXI GAANNNNTTC 6 cut(s) 406, 1257, 1518, 1758, 2531, 2912
MseI TTAA 7 cut(s) 656, 1185, 1791, 1916, 2130, 2463, 2613
MslI CAYNNNNRTG 5 cut(s) 1361, 1640, 1932, 2497, 3203
MspA1I CMGCKG 2 cut(s) 638, 1817
MspI CCGG 4 cut(s) 255, 2093, 2426, 2448
MspR9I CCNGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
MunI CAATTG 1 cut(s) 1614
Mva1269I GAATGC 6 cut(s) 555, 944, 1346, 1422, 2763, 2792
MvaI CCWGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
MwoI GCNNNNNNNGC 4 cut(s) 464, 2767, 2835, 2844
NlaIV GGNNCC 6 cut(s) 263, 1539, 1606, 2408, 2640, 2854
NmuCI GTSAC 5 cut(s) 210, 1499, 2236, 3161, 3205
NsiI ATGCAT 3 cut(s) 1488, 1690, 2763
NspI RCATGY 3 cut(s) 1100, 1639, 3169
NspV TTCGAA 1 cut(s) 2597
OliI CACNNNNGTG 1 cut(s) 3203
PaeI GCATGC 1 cut(s) 1100
PagI TCATGA 3 cut(s) 1318, 1933, 2020
PciI ACATGT 1 cut(s) 3165
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 1552
PctI GAATGC 6 cut(s) 555, 944, 1346, 1422, 2763, 2792
PdmI GAANNNNTTC 6 cut(s) 406, 1257, 1518, 1758, 2531, 2912
Pfl23II CGTACG 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 1551
PfoI TCCNGGA 2 cut(s) 973, 2809
PkrI GCNGC 6 cut(s) 442, 943, 1737, 2424, 3180, 3188
PleI GAGTC 5 cut(s) 511, 1707, 1977, 2042, 2328
PpsI GAGTC 5 cut(s) 511, 1707, 1977, 2042, 2328
PpuMI RGGWCCY 2 cut(s) 300, 2853
PscI ACATGT 1 cut(s) 3165
Psp124BI GAGCTC 1 cut(s) 1024
Psp5II RGGWCCY 2 cut(s) 300, 2853
Psp6I CCWGG 6 cut(s) 973, 2246, 2691, 2700, 2809, 2824
PspEI GGTNACC 1 cut(s) 1450
PspFI CCCAGC 1 cut(s) 3192
PspGI CCWGG 6 cut(s) 973, 2246, 2691, 2700, 2809, 2824
PspLI CGTACG 1 cut(s) 137
PspN4I GGNNCC 6 cut(s) 263, 1539, 1606, 2408, 2640, 2854
PspPI GGNCC 4 cut(s) 300, 931, 1111, 2853
PspPPI RGGWCCY 2 cut(s) 300, 2853
PstI CTGCAG 3 cut(s) 1768, 2772, 3180
PstNI CAGNNNCTG 2 cut(s) 2729, 2776
PsuI RGATCY 2 cut(s) 460, 2395
PsyI GACNNNGTC 1 cut(s) 1551
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 6 cut(s) 139, 1000, 2259, 2479, 2780, 2992
RsaNI GTAC 6 cut(s) 138, 999, 2258, 2478, 2779, 2991
RseI CAYNNNNRTG 5 cut(s) 1361, 1640, 1932, 2497, 3203
SacI GAGCTC 1 cut(s) 1024
SaqAI TTAA 7 cut(s) 656, 1185, 1791, 1916, 2130, 2463, 2613
SatI GCNGC 6 cut(s) 441, 942, 1736, 2423, 3179, 3187
Sau96I GGNCC 4 cut(s) 300, 931, 1111, 2853
SbfI CCTGCAGG 1 cut(s) 1768
SchI GAGTC 5 cut(s) 512, 1707, 1977, 2043, 2329
ScrFI CCNGG 6 cut(s) 975, 2248, 2693, 2702, 2811, 2826
SdaI CCTGCAGG 1 cut(s) 1768
SduI GDGCHC 2 cut(s) 501, 1024
SfaNI GCATC 8 cut(s) 618, 657, 725, 945, 1573, 1689, 2442, 2770
SfcI CTRYAG 4 cut(s) 1764, 2768, 2839, 3176
SfuI TTCGAA 1 cut(s) 2597
SinI GGWCC 4 cut(s) 300, 931, 1111, 2853
SmiMI CAYNNNNRTG 5 cut(s) 1361, 1640, 1932, 2497, 3203
SmlI CTYRAG 2 cut(s) 64, 2317
SmoI CTYRAG 2 cut(s) 64, 2317
SpeI ACTAGT 2 cut(s) 47, 2233
SphI GCATGC 1 cut(s) 1100
Sse8387I CCTGCAGG 1 cut(s) 1768
SsiI CCGC 5 cut(s) 193, 440, 1007, 1815, 2244
SspI AATATT 3 cut(s) 850, 1587, 1600
SstI GAGCTC 1 cut(s) 1024
StyD4I CCNGG 6 cut(s) 973, 2246, 2691, 2700, 2809, 2824
StyI CCWWGG 2 cut(s) 164, 1533
TaiI ACGT 2 cut(s) 143, 1552
TaqI TCGA 9 cut(s) 145, 204, 339, 912, 1142, 1555, 1652, 2597, 3071
TaqII GACCGA 1 cut(s) 2908
TauI GCSGC 1 cut(s) 443
Tru1I TTAA 7 cut(s) 656, 1185, 1791, 1916, 2130, 2463, 2613
Tru9I TTAA 7 cut(s) 656, 1185, 1791, 1916, 2130, 2463, 2613
TscAI CASTG 3 cut(s) 1031, 1462, 1747
TseFI GTSAC 5 cut(s) 210, 1499, 2236, 3161, 3205
TseI GCWGC 5 cut(s) 941, 1735, 2422, 3178, 3186
Tsp45I GTSAC 5 cut(s) 210, 1499, 2236, 3161, 3205
TspGWI ACGGA 5 cut(s) 617, 1815, 2317, 2854, 2994
TspRI CASTG 3 cut(s) 1031, 1462, 1747
Tth111I GACNNNGTC 1 cut(s) 1551
VpaK11BI GGWCC 4 cut(s) 300, 931, 1111, 2853
XagI CCTNNNNNAGG 1 cut(s) 3003
XapI RAATTY 8 cut(s) 698, 725, 1056, 1657, 1757, 1793, 2305, 2820
XbaI TCTAGA 2 cut(s) 1525, 1975
XceI RCATGY 3 cut(s) 1100, 1639, 3169
XmnI GAANNNNTTC 6 cut(s) 406, 1257, 1518, 1758, 2531, 2912
Zsp2I ATGCAT 3 cut(s) 1488, 1690, 2763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.