Rmu_sc0002393.1_g000007

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002393.1
OG0000103
Physical Location & Seq
Reverse (-)
34221 .. 34700
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002393.1_g000007.1.cds

Sequence Viewer

Length: 480 bp
atggacatcgaagcgttacaacatgccatcaagtttgttctcctgccaagatttggtttgtttagagttatgtgtttgctaagccctccgtccacattcagaggcttcaggaatatgaagtacctaactattttctatgttaatttgtctcaagttgtggttcaaaatttgatttcttgtagtcctctgcttaagagaataacagcgcgacattgtgatggtttcaccaatctcaagatcgatgcaccaaatctcgagtctattaacattttaggtgtgtttaaagatgttgaccttgtaaatacctcaaatgttgcttatgcttcaattgatttggacatcaaggtggaccaaatacagggtccgggtagttctagcaatttggtcaaggttttaaatcacctgcctcgtattcgaaggctcactattaagaggtactttttgaaggtaatcgattttctggtttccttcatttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

159

Amino Acids

18.06

Weight (kDa)

9.71

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 411
AccB7I CCANNNNNTGG 1 cut(s) 53
AccII CGCG 1 cut(s) 208
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 2 cut(s) 122, 437
AfiI CCNNNNNNNGG 2 cut(s) 53, 358
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 164, 327, 445
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 254
ApoI RAATTY 1 cut(s) 166
ArsI GACNNNNNNTTYG 4 cut(s) 242, 274, 346, 378
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 349, 362
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 217, 392
AsuII TTCGAA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 2 cut(s) 349, 362
BccI CCATC 2 cut(s) 35, 212
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 411
BlpI GCTNAGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 2 cut(s) 349, 362
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 349, 362
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 232
Bpu1102I GCTNAGC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 415
BpuEI CTTGAG 2 cut(s) 135, 218
BpuMI CCSGG 1 cut(s) 366
Bsa29I ATCGAT 2 cut(s) 240, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 358
BseCI ATCGAT 2 cut(s) 240, 453
BseLI CCNNNNNNNGG 2 cut(s) 53, 358
Bsh1236I CGCG 1 cut(s) 208
BshVI ATCGAT 2 cut(s) 240, 453
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 53, 358
BsmAI GTCTC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 415
Bsp143I GATC 1 cut(s) 237
Bsp1720I GCTNAGC 1 cut(s) 80
BspDI ATCGAT 2 cut(s) 240, 453
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 476
BspLI GGNNCC 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 191
BssMI GATC 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 1 cut(s) 208
Bsu15I ATCGAT 2 cut(s) 240, 453
BsuTUI ATCGAT 2 cut(s) 240, 453
BveI ACCTGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 476
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 349, 362
ClaI ATCGAT 2 cut(s) 240, 453
Csp6I GTAC 2 cut(s) 121, 436
CviAII CATG 2 cut(s) 23, 477
CviJI RGCY 3 cut(s) 84, 105, 421
CviKI_1 RGCY 3 cut(s) 84, 105, 421
CviQI GTAC 2 cut(s) 121, 436
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
DraI TTTAAA 2 cut(s) 283, 396
Eco47I GGWCC 2 cut(s) 349, 362
Eco57I CTGAAG 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 254
FaeI CATG 2 cut(s) 26, 480
FaiI YATR 6 cut(s) 24, 71, 116, 138, 321, 478
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 2 cut(s) 22, 476
FspBI CTAG 1 cut(s) 375
GlaI GCGC 1 cut(s) 207
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 26, 480
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 365
HphI GGTGA 2 cut(s) 217, 392
Hpy166II GTNNAC 3 cut(s) 93, 292, 349
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 4 cut(s) 109, 235, 254, 477
Hpy8I GTNNAC 3 cut(s) 93, 292, 349
HpyAV CCTTC 3 cut(s) 411, 439, 478
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 2 cut(s) 26, 480
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 237
LpnPI CCDG 6 cut(s) 56, 94, 344, 378, 416, 446
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MfeI CAATTG 1 cut(s) 327
MluCI AATT 4 cut(s) 142, 166, 327, 379
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 6 cut(s) 95, 96, 195, 316, 417, 426
MseI TTAA 6 cut(s) 141, 192, 264, 282, 395, 429
MslI CAYNNNNRTG 2 cut(s) 216, 344
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 1 cut(s) 327
MvnI CGCG 1 cut(s) 208
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 26, 480
NlaIV GGNNCC 1 cut(s) 363
NspI RCATGY 1 cut(s) 26
NspV TTCGAA 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 1 cut(s) 476
PaqCI CACCTGC 1 cut(s) 411
PflMI CCANNNNNTGG 1 cut(s) 53
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 2 cut(s) 349, 362
RsaI GTAC 2 cut(s) 122, 437
RsaNI GTAC 2 cut(s) 121, 436
RseI CAYNNNNRTG 2 cut(s) 216, 344
SaqAI TTAA 6 cut(s) 141, 192, 264, 282, 395, 429
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 2 cut(s) 349, 362
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 366
SetI ASST 9 cut(s) 126, 277, 297, 308, 348, 393, 405, 437, 450
SfaNI GCATC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 415
SinI GGWCC 2 cut(s) 349, 362
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 216, 344
SmlI CTYRAG 4 cut(s) 150, 191, 233, 254
SmoI CTYRAG 4 cut(s) 150, 191, 233, 254
Sse9I AATT 4 cut(s) 142, 166, 327, 379
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 364
TaqI TCGA 5 cut(s) 9, 240, 255, 415, 453
TasI AATT 4 cut(s) 142, 166, 327, 379
Tru1I TTAA 6 cut(s) 141, 192, 264, 282, 395, 429
Tru9I TTAA 6 cut(s) 141, 192, 264, 282, 395, 429
TspDTI ATGAA 3 cut(s) 131, 460, 465
TspGWI ACGGA 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 53
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 349, 362
XapI RAATTY 1 cut(s) 166
XceI RCATGY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 254
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.