FvH4_4g17790

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000103
Physical Location & Seq
Forward (+)
21787127 .. 21787843
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17790.t1

Sequence Viewer

Length: 717 bp
ATGATTCGGCATCTTGTGTTTGATGAGCGCTGTCTTTCGGATAAGAATAGAGGCTACGGAGGTGCTGCAACGATGTTGAGAGATTTTGAGAATGTTGTTGATCGAGTTCTCTTGCTTCACTATGGTTCCATAGACACTTTCGAGCTTTCCAGTCGAGATTTTCTTGCTGGGGCTAGTTGCATAGATAGATGGTTTCTTTATCTCTTAAGAAACTCTAGTTCTGTCAAAGAGGTCATGCTGAAACAACGCGGGACTATGTACAAGGTCTCTTCATGTATGTTTCTCCTTCAGGATTTGACTCGCTTAGAGCTGTACAATTGTCTGCTAAAACCCCCTGTGGAGTTCAGAGGCTTCCCGAGATTGAAGAGCCTCGAAATTCTTAAAGTCACTGTGGCGCAAGACGTGTTGGAAAAGATTATCAGTTGCTGTCCTCTACTTGAGAGAATGACTCTACGTGGATATAGGAGTGCTACCCGTCTTAACATTGATGCACAAAATCTCCAATTCCTTGAAGTTGGAGGTGGTTTTCGGAGATTTGAACTTAAGAATACCCCAAATCTTGTTGGTATGAAAGTAAATGGTTTTCGTGGTGTGAAGGCTGAAGTGGACTTCCTCAAAGCTCTGCTGCCAAGCTCCCCTCTTCAAGAACTAGACATTTCTATAAGTTGTCTTCTATTGAAATGCTACTTGTCCTTATACAGATTGAATTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

239

Amino Acids

27.33

Weight (kDa)

9.11

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 45 - 194 7.1e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 62 - 187 1.5e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 2 cut(s) 272, 621
AfaI GTAC 2 cut(s) 260, 314
AfeI AGCGCT 1 cut(s) 29
AflII CTTAAG 2 cut(s) 205, 542
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 6 cut(s) 364, 512, 539, 644, 679, 706
AjiI CACGTC 1 cut(s) 403
AluBI AGCT 4 cut(s) 145, 310, 620, 633
AluI AGCT 4 cut(s) 145, 310, 620, 633
Alw26I GTCTC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 355
Aor51HI AGCGCT 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 65, 625
ApoI RAATTY 1 cut(s) 375
AspLEI GCGC 2 cut(s) 30, 397
AvaI CYCGRG 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 2 cut(s) 52, 612
BccI CCATC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 3 cut(s) 174, 216, 650
BfoI RGCGCY 1 cut(s) 31
BfrI CTTAAG 2 cut(s) 205, 542
BisI GCNGC 2 cut(s) 66, 626
BlsI GCNGC 2 cut(s) 67, 627
BmeT110I CYCGRG 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 2 cut(s) 19, 478
BpiI GAAGAC 1 cut(s) 662
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpuEI CTTGAG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bse1I ACTGG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 52, 612
BseYI CCCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 355
Bsp1407I TGTACA 2 cut(s) 258, 312
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 249
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 359
BspTI CTTAAG 2 cut(s) 205, 542
BspTNI GGTCTC 1 cut(s) 271
BsrGI TGTACA 2 cut(s) 258, 312
BsrI ACTGG 1 cut(s) 150
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 3 cut(s) 274, 359, 645
BstAFI CTTAAG 2 cut(s) 205, 542
BstAUI TGTACA 2 cut(s) 258, 312
BstBAI YACGTR 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 397
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 100
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 52, 612
BstV2I GAAGAC 1 cut(s) 662
BtrI CACGTC 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 426
CfoI GCGC 2 cut(s) 30, 397
Csp6I GTAC 2 cut(s) 259, 313
CviAII CATG 2 cut(s) 235, 273
CviJI RGCY 9 cut(s) 54, 145, 173, 310, 351, 369, 599, 620, 633
CviKI_1 RGCY 9 cut(s) 54, 145, 173, 310, 351, 369, 599, 620, 633
CviQI GTAC 2 cut(s) 259, 313
DdeI CTNAG 1 cut(s) 304
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 3 cut(s) 274, 359, 645
EarI CTCTTC 3 cut(s) 274, 359, 645
Eco31I GGTCTC 1 cut(s) 271
Eco47III AGCGCT 1 cut(s) 29
Eco57I CTGAAG 2 cut(s) 272, 621
Eco88I CYCGRG 1 cut(s) 355
FaeI CATG 2 cut(s) 238, 276
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 234, 272
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 66, 626
Fsp4HI GCNGC 2 cut(s) 66, 626
FspBI CTAG 3 cut(s) 174, 216, 650
GlaI GCGC 2 cut(s) 29, 396
GluI GCNGC 2 cut(s) 66, 626
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 31
HhaI GCGC 2 cut(s) 30, 397
Hin1II CATG 2 cut(s) 238, 276
Hin6I GCGC 2 cut(s) 28, 395
HinP1I GCGC 2 cut(s) 28, 395
HinfI GANTC 3 cut(s) 4, 298, 448
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 3 cut(s) 40, 347, 531
Hpy188III TCNNGA 4 cut(s) 155, 290, 355, 644
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 2 cut(s) 296, 589
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 402, 454
HpyCH4V TGCA 3 cut(s) 68, 180, 491
HpyF3I CTNAG 1 cut(s) 304
HpySE526I ACGT 2 cut(s) 402, 454
Hsp92II CATG 2 cut(s) 238, 276
HspAI GCGC 2 cut(s) 28, 395
Kzo9I GATC 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 4 cut(s) 153, 163, 275, 348
Lsp1109I GCAGC 2 cut(s) 52, 612
LweI GCATC 2 cut(s) 19, 478
MaeI CTAG 3 cut(s) 174, 216, 650
MaeII ACGT 2 cut(s) 402, 454
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 261, 376, 632, 662
MfeI CAATTG 1 cut(s) 316
MluCI AATT 5 cut(s) 316, 375, 503, 706, 712
MlyI GAGTC 2 cut(s) 292, 442
MmeI TCCRAC 2 cut(s) 387, 496
MnlI CCTC 9 cut(s) 44, 53, 223, 341, 380, 441, 512, 623, 648
MseI TTAA 5 cut(s) 206, 381, 480, 543, 715
MspCI CTTAAG 2 cut(s) 205, 542
MunI CAATTG 1 cut(s) 316
MvnI CGCG 1 cut(s) 249
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 238, 276
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 67, 627
PleI GAGTC 2 cut(s) 292, 442
PpsI GAGTC 2 cut(s) 292, 442
Ppu21I YACGTR 1 cut(s) 455
PsiI TTATAA 1 cut(s) 711
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 426
RsaI GTAC 2 cut(s) 260, 314
RsaNI GTAC 2 cut(s) 259, 313
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 5 cut(s) 206, 381, 480, 543, 715
SatI GCNGC 2 cut(s) 66, 626
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 2 cut(s) 292, 442
SfaNI GCATC 2 cut(s) 19, 478
SmlI CTYRAG 3 cut(s) 205, 437, 542
SmoI CTYRAG 3 cut(s) 205, 437, 542
Sse9I AATT 5 cut(s) 316, 375, 503, 706, 712
SsiI CCGC 1 cut(s) 249
SspMI CTAG 3 cut(s) 174, 216, 650
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 405, 457
TaqI TCGA 4 cut(s) 103, 141, 154, 372
TasI AATT 5 cut(s) 316, 375, 503, 706, 712
TatI WGTACW 2 cut(s) 258, 312
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 5 cut(s) 206, 381, 480, 543, 715
Tru9I TTAA 5 cut(s) 206, 381, 480, 543, 715
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 2 cut(s) 65, 625
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 2 cut(s) 261, 584
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 394
Vha464I CTTAAG 2 cut(s) 205, 542
XapI RAATTY 1 cut(s) 375
XspI CTAG 3 cut(s) 174, 216, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.