FvH4_5g14272

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000103
Physical Location & Seq
Forward (+)
8056662 .. 8057293
632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14272.t1

Sequence Viewer

Length: 453 bp
ATGCATATATTTGTCACTGAAATTCTCTGTTCTGGTGGTGGTGGTGCCAAGCCTTCATCAAGATGTGAGGTGAAGTTGGACTCAATTAGCAACTTACCAAATGATATAGTAGAAAAGATTTTGGCACATTTGCCGATTAAGGAGGCAGTGAGGACAAGTATTTTATCAACCGAGTGGAGGTATGTACCAGCCATGCTTCAAAATCTAAAGTTTGATGAGCAATGTGTATCAACGCAGGAGCATACCACCTTTGCTAATATTGTTGATCAAGTACTCTTACTTCACATTGGCAACATATACGAGTTTCAGCTTTCTCATCTAGATTTTTTAGCCAGTGCTGATATCGATAGATGGCTTCTTCATCTATCAAGAAGTTCTGTCAAATGTTTGAAACTCGGAATCCCGAAGAGGGGTCGCTGGATGGATCGCTACAAGTTGCTGAAGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

151

Amino Acids

17.1

Weight (kDa)

8.71

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 62 1.6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AclWI GGATC 1 cut(s) 432
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 2 cut(s) 186, 273
AfiI CCNNNNNNNGG 3 cut(s) 177, 409, 410
AgsI TTSAA 2 cut(s) 200, 391
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AlwI GGATC 1 cut(s) 432
ApoI RAATTY 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BccI CCATC 2 cut(s) 345, 415
BclI TGATCA 1 cut(s) 265
BfaI CTAG 1 cut(s) 320
BmcAI AGTACT 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 409, 410
Bse1I ACTGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 345
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 177, 409, 410
BseMI GCAATG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 177, 409, 410
Bsp143I GATC 2 cut(s) 265, 424
BspDI ATCGAT 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 333
BssMI GATC 2 cut(s) 265, 424
Bst6I CTCTTC 1 cut(s) 401
BstF5I GGATG 1 cut(s) 426
BstKTI GATC 2 cut(s) 268, 427
BstMBI GATC 2 cut(s) 265, 424
Bsu15I ATCGAT 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 345
BtsCI GGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 15, 153, 340
ClaI ATCGAT 1 cut(s) 345
Csp6I GTAC 2 cut(s) 185, 272
CviAII CATG 1 cut(s) 193
CviJI RGCY 5 cut(s) 52, 191, 310, 332, 355
CviKI_1 RGCY 5 cut(s) 52, 191, 310, 332, 355
CviQI GTAC 2 cut(s) 185, 272
DpnI GATC 2 cut(s) 267, 426
DpnII GATC 2 cut(s) 265, 424
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco32I GATATC 1 cut(s) 343
EcoRV GATATC 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 196
FaiI YATR 8 cut(s) 6, 8, 107, 183, 194, 243, 296, 298
FatI CATG 1 cut(s) 192
FbaI TGATCA 1 cut(s) 265
FokI GGATG 1 cut(s) 433
FspBI CTAG 1 cut(s) 320
Hin1II CATG 1 cut(s) 196
HinfI GANTC 2 cut(s) 80, 399
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 4 cut(s) 60, 320, 369, 403
HpyAV CCTTC 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 265, 424
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 18, 201, 221, 346, 403
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 267, 426
MboI GATC 2 cut(s) 265, 424
MboII GAAGA 2 cut(s) 350, 418
MluCI AATT 2 cut(s) 21, 84
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 61, 136, 144, 171, 402
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 61
NdeII GATC 2 cut(s) 265, 424
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 399
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 46
RsaI GTAC 2 cut(s) 186, 273
RsaNI GTAC 2 cut(s) 185, 272
RseI CAYNNNNRTG 1 cut(s) 61
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 265, 424
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 74
SetI ASST 4 cut(s) 72, 182, 251, 312
SmiMI CAYNNNNRTG 1 cut(s) 61
Sse9I AATT 2 cut(s) 21, 84
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 320
TaqI TCGA 1 cut(s) 345
TasI AATT 2 cut(s) 21, 84
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 3 cut(s) 22, 153, 340
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 45, 350
TspRI CASTG 3 cut(s) 22, 153, 340
XapI RAATTY 1 cut(s) 21
XbaI TCTAGA 1 cut(s) 319
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.