Rmu_sc0001014.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001014.1
OG0000103
Physical Location & Seq
Forward (+)
1 .. 984
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001014.1_g000001.1.cds

Sequence Viewer

Length: 733 bp
ccaagatgttcttgaaaatcttattgtttgttgtcctcttctcaagacattgactttcatagactgtgatggtttcacccgtctcaagattgatgctccaaaactccaattcttaggttttaggggtcgttttgatgatgttattcttgaaaacaccataaatcttgatgctgttacgatttatctggaggctaatgttgaccaaaaatgggttccccgtagttctagcaatctggtcttgtttttccttcacctgcctcgtgttcgaagacttgcaatcaggagtaactttttaaagtatttggctgttagtgccttgacaagaaaggtgcctaaaccatgtttgcatctgaaatttcttactatagagatacattttaatgatctggaggagactttaactgctgtacgccttctgagaagctcccctgctttacaagaactagaaatcgcagccttcccaaaggatcaagctgttgttggagaagtgaactcttggttagatgacaacctcatttggtcattcactaaactgcgacttgtgaaaataaccggcatctctggtgccaaagctgaattagatttcattagatttttgcttttaagttcacctgtgcttgagaggatgactattaagcctgcttctgtcaatggttcttcagaactgctaaaaaagttgctccggcttgggcgtgcctcggtgcattcagagataatctacttggacccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

243

Amino Acids

27.57

Weight (kDa)

8.89

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 2 cut(s) 329, 564
AclWI GGATC 1 cut(s) 475
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 643
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 2 cut(s) 15, 150
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 3 cut(s) 424, 474, 573
AluI AGCT 3 cut(s) 424, 474, 573
Alw26I GTCTC 2 cut(s) 87, 387
AlwI GGATC 1 cut(s) 475
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 68, 243, 601
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 725
BanI GGYRCC 2 cut(s) 329, 564
BauI CACGAG 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 465
BccI CCATC 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 87, 387
BfaI CTAG 2 cut(s) 226, 444
BfmI CTRYAG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 4 cut(s) 214, 331, 566, 727
BmsI GCATC 4 cut(s) 83, 158, 356, 565
BpiI GAAGAC 1 cut(s) 275
BpmI CTGGAG 2 cut(s) 207, 408
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 3 cut(s) 27, 69, 639
BsaJI CCNNGG 1 cut(s) 697
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 697
BseGI GGATG 1 cut(s) 631
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 329, 564
BsiSI CCGG 2 cut(s) 553, 683
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 2 cut(s) 87, 387
BsmBI CGTCTC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 704
Bsp119I TTCGAA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 383, 467
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 4 cut(s) 214, 331, 566, 727
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 475
BspT104I TTCGAA 1 cut(s) 266
BspT107I GGYRCC 2 cut(s) 329, 564
BsrFI RCCGGY 1 cut(s) 552
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 2 cut(s) 383, 467
BssSI CACGAG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 640, 694
BstDEI CTNAG 2 cut(s) 113, 417
BstF5I GGATG 1 cut(s) 631
BstKTI GATC 2 cut(s) 386, 470
BstMAI GTCTC 2 cut(s) 87, 387
BstMBI GATC 2 cut(s) 383, 467
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 465
BstV2I GAAGAC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 631
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 640, 694
Cfr10I RCCGGY 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 408
CviAII CATG 1 cut(s) 340
CviJI RGCY 8 cut(s) 192, 306, 424, 456, 474, 573, 638, 686
CviKI_1 RGCY 8 cut(s) 192, 306, 424, 456, 474, 573, 638, 686
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 2 cut(s) 113, 417
DpnI GATC 2 cut(s) 385, 469
DpnII GATC 2 cut(s) 383, 467
DraI TTTAAA 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 643
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 343
FaiI YATR 4 cut(s) 60, 159, 341, 366
FalI AAGNNNNNCTT 1 cut(s) 27
FatI CATG 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 1 cut(s) 638
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 2 cut(s) 226, 444
GluI GCNGC 1 cut(s) 454
GsuI CTGGAG 2 cut(s) 207, 408
HapII CCGG 2 cut(s) 553, 683
Hin1II CATG 1 cut(s) 343
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HpaII CCGG 2 cut(s) 553, 683
HphI GGTGA 3 cut(s) 68, 243, 601
Hpy166II GTNNAC 3 cut(s) 200, 491, 609
Hpy188I TCNGA 4 cut(s) 352, 418, 662, 710
Hpy188III TCNNGA 8 cut(s) 12, 44, 86, 147, 165, 186, 281, 387
Hpy8I GTNNAC 3 cut(s) 200, 491, 609
HpyAV CCTTC 3 cut(s) 258, 423, 467
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 276, 347, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 2 cut(s) 113, 417
Hsp92II CATG 1 cut(s) 343
Kzo9I GATC 2 cut(s) 383, 467
LmnI GCTCC 3 cut(s) 101, 429, 685
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 4 cut(s) 83, 158, 356, 565
MaeI CTAG 2 cut(s) 226, 444
MaeIII GTNAC 2 cut(s) 173, 285
MalI GATC 2 cut(s) 385, 469
MboI GATC 2 cut(s) 383, 467
MboII GAAGA 3 cut(s) 30, 280, 649
MluCI AATT 3 cut(s) 108, 354, 576
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 7 cut(s) 46, 182, 268, 383, 522, 616, 707
MseI TTAA 5 cut(s) 294, 379, 399, 603, 634
MslI CAYNNNNRTG 1 cut(s) 379
MspI CCGG 2 cut(s) 553, 683
Mva1269I GAATGC 1 cut(s) 704
MwoI GCNNNNNNNGC 1 cut(s) 312
NdeII GATC 2 cut(s) 383, 467
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 4 cut(s) 214, 331, 566, 727
NspV TTCGAA 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 262
PctI GAATGC 1 cut(s) 704
PkrI GCNGC 1 cut(s) 455
PspN4I GGNNCC 4 cut(s) 214, 331, 566, 727
PspPI GGNCC 1 cut(s) 725
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 379
SaqAI TTAA 5 cut(s) 294, 379, 399, 603, 634
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 2 cut(s) 383, 467
Sau96I GGNCC 1 cut(s) 725
SetI ASST 8 cut(s) 119, 256, 331, 426, 476, 514, 575, 614
SfaNI GCATC 4 cut(s) 83, 158, 356, 565
SfcI CTRYAG 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 3 cut(s) 42, 84, 618
SmoI CTYRAG 3 cut(s) 42, 84, 618
Sse9I AATT 3 cut(s) 108, 354, 576
SspMI CTAG 2 cut(s) 226, 444
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 266
TasI AATT 3 cut(s) 108, 354, 576
Tru1I TTAA 5 cut(s) 294, 379, 399, 603, 634
Tru9I TTAA 5 cut(s) 294, 379, 399, 603, 634
TseI GCWGC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 47, 575
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 354
XspI CTAG 2 cut(s) 226, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.