Rmu_sc0013953.1_g000004

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013953.1
OG0000103
Physical Location & Seq
Reverse (-)
8325 .. 9700
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013953.1_g000004.1.cds

Sequence Viewer

Length: 1071 bp
atggaggtggagttggactcaattagcaacttaccaagagagattgttgaaaagattttggcacgtttgccgattaaggaggcagtgaggacaagtattttatcgaccaagtggaggtataaaccagccatgcttcaaaatctaaagtttgatgagcaatgtgtatcgactcagaaccatatcacctttgctaatattgttgatcaagtactcttacttcacattggccccatacacaagtttgagctttctcatcgggattttttagccagggcatcgcatcgctacaagttgccctcttgtttcttttcttgtcaagacataattcatttgcggttacataattgtattctaaagcctccatcaactttcagaggcttcatgagtttggagcatcttgacattaggcatgttacgttggcccaacatgtctttgaagattttattgtttgttgtcctgtgcttaagagactgattttgaaatactgtgatggtttcacaaatctctgcattgatgcaccaaatctcaaattgcctgatatagatggtagttttgaggatgttagtcttcagaataccttacttcttgaacatgttgacatccgtttggaattcaaagtcagatggattgttggcggttcatccaatttggtcaagtttttcgttcacctacctaatattcgtgaccttcaaatttcaggttatgttttaaagtatttggctgttggtcccttgctacgaaagctgcctcaaccagtactgtttctgaatgatctttatatggacgtaaacttcactgatctggaggatattacaactgctctatgccttgtaaggagctcccctgctctacgaaaactagagattgtggtcaaccatattgattatcatcatgtggtgggagaagtgaactcctggtttgaaaatttaggcgaaaactcagattgtcaactcactgaacttcaatgtatagaaattgttgccatctctgatgccaaagctgaactagattttatcaaattgctgctgttaagttcacctgtactggagtgcatgactcttaagtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

356

Amino Acids

40.84

Weight (kDa)

6.1

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1063
AciI CCGC 2 cut(s) 334, 636
AcsI RAATTY 3 cut(s) 611, 693, 925
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 3 cut(s) 210, 759, 1044
AfiI CCNNNNNNNGG 1 cut(s) 114
AflII CTTAAG 2 cut(s) 464, 1061
AflIII ACRYGT 2 cut(s) 427, 592
AgsI TTSAA 9 cut(s) 50, 137, 437, 481, 590, 616, 692, 923, 965
AjnI CCWGG 2 cut(s) 269, 914
AluBI AGCT 4 cut(s) 247, 745, 840, 1001
AluI AGCT 4 cut(s) 247, 745, 840, 1001
Alw21I GWGCWC 1 cut(s) 842
Alw26I GTCTC 1 cut(s) 463
AoxI GGCC 2 cut(s) 226, 420
ApeKI GCWGC 2 cut(s) 745, 1024
ApoI RAATTY 3 cut(s) 611, 693, 925
AspS9I GGNCC 3 cut(s) 227, 421, 728
AsuHPI GGTGA 3 cut(s) 175, 659, 1029
AvaII GGWCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 842
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 842
BbvI GCAGC 2 cut(s) 732, 1011
BccI CCATC 5 cut(s) 370, 485, 539, 618, 992
BciT130I CCWGG 2 cut(s) 271, 916
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 2 cut(s) 860, 1007
BfrI CTTAAG 2 cut(s) 464, 1061
BisI GCNGC 2 cut(s) 746, 1025
BlsI GCNGC 2 cut(s) 747, 1026
BmcAI AGTACT 2 cut(s) 210, 759
Bme1390I CCNGG 2 cut(s) 271, 916
Bme18I GGWCC 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 227, 421, 728
BmiI GGNNCC 2 cut(s) 229, 730
BmrFI CCNGG 2 cut(s) 271, 916
BmsI GCATC 5 cut(s) 284, 289, 403, 505, 982
BpiI GAAGAC 1 cut(s) 560
BplI GAGNNNNNCTC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 824, 1067
BsaBI GATNNNNATC 1 cut(s) 888
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 755, 1050
Bse3DI GCAATG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 2 cut(s) 271, 916
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 3 cut(s) 565, 600, 641
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 2 cut(s) 185, 954
BseNI ACTGG 2 cut(s) 755, 1050
BseXI GCAGC 2 cut(s) 732, 1011
BshFI GGCC 2 cut(s) 228, 422
BsiHKAI GWGCWC 1 cut(s) 842
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 2 cut(s) 228, 422
Bsp1286I GDGCHC 1 cut(s) 842
Bsp143I GATC 3 cut(s) 202, 772, 799
BspACI CCGC 2 cut(s) 334, 636
BspANI GGCC 2 cut(s) 228, 422
BspCNI CTCAG 2 cut(s) 184, 953
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 229, 730
BspTI CTTAAG 2 cut(s) 464, 1061
BsrDI GCAATG 1 cut(s) 164
BsrI ACTGG 2 cut(s) 755, 1050
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 3 cut(s) 202, 772, 799
Bst2UI CCWGG 2 cut(s) 271, 916
Bst4CI ACNGT 2 cut(s) 488, 762
BstAFI CTTAAG 2 cut(s) 464, 1061
BstDEI CTNAG 2 cut(s) 171, 940
BstF5I GGATG 3 cut(s) 565, 600, 641
BstKTI GATC 3 cut(s) 205, 775, 802
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 3 cut(s) 202, 772, 799
BstMWI GCNNNNNNNGC 1 cut(s) 742
BstNI CCWGG 2 cut(s) 271, 916
BstNSI RCATGY 3 cut(s) 413, 431, 596
BstSCI CCNGG 2 cut(s) 269, 914
BstV1I GCAGC 2 cut(s) 732, 1011
BstV2I GAAGAC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 228, 422
BtgZI GCGATG 2 cut(s) 261, 266
BtsCI GGATG 3 cut(s) 565, 600, 641
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 3 cut(s) 90, 795, 954
CciI TCATGA 1 cut(s) 381
Cfr13I GGNCC 3 cut(s) 227, 421, 728
Csp6I GTAC 3 cut(s) 209, 758, 1043
CviAII CATG 7 cut(s) 130, 382, 410, 428, 593, 893, 1054
CviQI GTAC 3 cut(s) 209, 758, 1043
DdeI CTNAG 2 cut(s) 171, 940
DpnI GATC 3 cut(s) 204, 774, 801
DpnII GATC 3 cut(s) 202, 772, 799
DraI TTTAAA 1 cut(s) 711
DrdI GACNNNNNNGTC 1 cut(s) 1063
DseDI GACNNNNNNGTC 1 cut(s) 1063
Ecl136II GAGCTC 1 cut(s) 840
Eco24I GRGCYC 1 cut(s) 842
Eco47I GGWCC 1 cut(s) 728
Eco53kI GAGCTC 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 554
EcoICRI GAGCTC 1 cut(s) 840
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 269, 914
EcoT38I GRGCYC 1 cut(s) 842
FaeI CATG 7 cut(s) 133, 385, 413, 431, 596, 896, 1057
FaqI GGGAC 1 cut(s) 714
FatI CATG 7 cut(s) 129, 381, 409, 427, 592, 892, 1053
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 746, 1025
FokI GGATG 3 cut(s) 572, 587, 628
FriOI GRGCYC 1 cut(s) 842
Fsp4HI GCNGC 2 cut(s) 746, 1025
FspBI CTAG 2 cut(s) 860, 1007
GluI GCNGC 2 cut(s) 746, 1025
GsuI CTGGAG 2 cut(s) 824, 1067
HaeIII GGCC 2 cut(s) 228, 422
Hin1II CATG 7 cut(s) 133, 385, 413, 431, 596, 896, 1057
HincII GTYRAC 3 cut(s) 598, 874, 950
HindII GTYRAC 3 cut(s) 598, 874, 950
HinfI GANTC 3 cut(s) 17, 169, 1057
HphI GGTGA 3 cut(s) 175, 659, 1029
Hpy166II GTNNAC 7 cut(s) 598, 667, 790, 874, 910, 950, 1037
Hpy188I TCNGA 7 cut(s) 174, 374, 573, 623, 768, 943, 991
Hpy188III TCNNGA 7 cut(s) 257, 317, 382, 398, 587, 683, 803
Hpy8I GTNNAC 7 cut(s) 598, 667, 790, 874, 910, 950, 1037
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 2 cut(s) 488, 762
HpyCH4IV ACGT 3 cut(s) 64, 416, 786
HpyCH4V TGCA 3 cut(s) 510, 518, 1053
HpyF10VI GCNNNNNNNGC 1 cut(s) 742
HpyF3I CTNAG 2 cut(s) 171, 940
HpySE526I ACGT 3 cut(s) 64, 416, 786
Hsp92II CATG 7 cut(s) 133, 385, 413, 431, 596, 896, 1057
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 202, 772, 799
LmnI GCTCC 3 cut(s) 391, 837, 845
Lsp1109I GCAGC 2 cut(s) 732, 1011
LweI GCATC 5 cut(s) 284, 289, 403, 505, 982
MaeI CTAG 2 cut(s) 860, 1007
MaeII ACGT 3 cut(s) 64, 416, 786
MaeIII GTNAC 3 cut(s) 336, 412, 683
MalI GATC 3 cut(s) 204, 774, 801
MboI GATC 3 cut(s) 202, 772, 799
MboII GAAGA 2 cut(s) 449, 560
MhlI GDGCHC 1 cut(s) 842
MlyI GAGTC 3 cut(s) 11, 163, 1051
MnlI CCTC 9 cut(s) 73, 81, 108, 307, 368, 369, 550, 759, 799
MseI TTAA 6 cut(s) 75, 465, 710, 1031, 1062, 1069
MspCI CTTAAG 2 cut(s) 464, 1061
MspR9I CCNGG 2 cut(s) 271, 916
MvaI CCWGG 2 cut(s) 271, 916
MwoI GCNNNNNNNGC 1 cut(s) 742
NdeII GATC 3 cut(s) 202, 772, 799
NlaIII CATG 7 cut(s) 133, 385, 413, 431, 596, 896, 1057
NlaIV GGNNCC 2 cut(s) 229, 730
NmuCI GTSAC 1 cut(s) 683
NspI RCATGY 3 cut(s) 413, 431, 596
PagI TCATGA 1 cut(s) 381
PciI ACATGT 2 cut(s) 427, 592
PkrI GCNGC 2 cut(s) 747, 1026
PleI GAGTC 3 cut(s) 11, 163, 1051
PpsI GAGTC 3 cut(s) 11, 163, 1051
PscI ACATGT 2 cut(s) 427, 592
Psp124BI GAGCTC 1 cut(s) 842
Psp6I CCWGG 2 cut(s) 269, 914
PspGI CCWGG 2 cut(s) 269, 914
PspN4I GGNNCC 2 cut(s) 229, 730
PspPI GGNCC 3 cut(s) 227, 421, 728
RsaI GTAC 3 cut(s) 210, 759, 1044
RsaNI GTAC 3 cut(s) 209, 758, 1043
SacI GAGCTC 1 cut(s) 842
SaqAI TTAA 6 cut(s) 75, 465, 710, 1031, 1062, 1069
SatI GCNGC 2 cut(s) 746, 1025
Sau3AI GATC 3 cut(s) 202, 772, 799
Sau96I GGNCC 3 cut(s) 227, 421, 728
ScaI AGTACT 2 cut(s) 210, 759
SchI GAGTC 3 cut(s) 11, 163, 1051
ScrFI CCNGG 2 cut(s) 271, 916
SduI GDGCHC 1 cut(s) 842
SfaNI GCATC 5 cut(s) 284, 289, 403, 505, 982
SinI GGWCC 1 cut(s) 728
SmlI CTYRAG 2 cut(s) 464, 1061
SmoI CTYRAG 2 cut(s) 464, 1061
SsiI CCGC 2 cut(s) 334, 636
SspI AATATT 2 cut(s) 196, 679
SspMI CTAG 2 cut(s) 860, 1007
SstI GAGCTC 1 cut(s) 842
StyD4I CCNGG 2 cut(s) 269, 914
TaaI ACNGT 2 cut(s) 488, 762
TaiI ACGT 3 cut(s) 67, 419, 789
TaqI TCGA 2 cut(s) 104, 167
TatI WGTACW 3 cut(s) 208, 757, 1042
Tru1I TTAA 6 cut(s) 75, 465, 710, 1031, 1062, 1069
Tru9I TTAA 6 cut(s) 75, 465, 710, 1031, 1062, 1069
TscAI CASTG 3 cut(s) 90, 802, 961
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 745, 1024
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 3 cut(s) 317, 370, 630
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 3 cut(s) 90, 802, 961
Vha464I CTTAAG 2 cut(s) 464, 1061
VpaK11BI GGWCC 1 cut(s) 728
XapI RAATTY 3 cut(s) 611, 693, 925
XceI RCATGY 3 cut(s) 413, 431, 596
XspI CTAG 2 cut(s) 860, 1007
ZrmI AGTACT 2 cut(s) 210, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.