MD08G1037400.v1.1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000103
Physical Location & Seq
Forward (+)
2751383 .. 2752230
848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1037400.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGTTCTTCGATGCCCTCTGCTTGAGAAGTTGACTGTGATGAACTTTGACGGTTTCTCCCATCTCAACATTGATGCGCCAAATCTCCAATTCTTTGACGTGGGAGGTAAATTTAAGGATGTTAATTTCAAGAGTACCTCAAATCTTGCTGTAGTTTCCATTGGCCAGTATGAGCACGTTGGCAACTCCTATAGATGGCTTCCTAGCAGTTCTAGCAATCTGCTCAAGTTTTTTGCTCACCTTCCTGGTATCCAAAGACTTGAAATTCAGAGTTACTTTTTAAAGCATTTGGCTATTGGTCTTGTGCCGGAAAATCTGCCTAAACCATGTCTAGTTCTGAACTATCTTTCTCTACGGATAAGCTTCAACGATTTAGATGAGGTCTTGACTGTTGTATGCATTTTGAAAATCTTTCATGCTCTACAAGAACTAGAAATTCTGGTCCGCCCAGAAGACGCGACCTTTGGTGGAACATTTGACCTTGAGTTAGGTGAAAACTGGAACTGCCCCATCACTCAACTACGACTTGTGAAACTAAATGGCATCTCAGGTACCAAATGGGAGCTAGAATTCATCAGATTTATACTTTTGAGTTCACCTGCGCTCGAGAGGATGACTGTGAAGCCTGCATCCGTTGACTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

216

Amino Acids

24.27

Weight (kDa)

5.95

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 1 - 146 2.6e-06 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 169 - 206 9.7e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 607
Acc36I ACCTGC 1 cut(s) 607
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccII CGCG 1 cut(s) 458
AciI CCGC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 4 cut(s) 110, 264, 435, 569
AfaI GTAC 2 cut(s) 136, 553
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 4 cut(s) 130, 263, 367, 406
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 363, 565
AluI AGCT 2 cut(s) 363, 565
Alw21I GWGCWC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 4 cut(s) 110, 264, 435, 569
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 79, 604
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 230, 503, 588
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 1 cut(s) 442
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 3 cut(s) 69, 189, 518
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 5 cut(s) 204, 213, 332, 431, 566
BfmI CTRYAG 2 cut(s) 150, 190
BfuAI ACCTGC 1 cut(s) 607
BfuI GTATCC 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 4 cut(s) 2, 64, 552, 638
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 3 cut(s) 44, 209, 503
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 166, 503
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 124, 618, 629
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 2 cut(s) 166, 503
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 195
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 1 cut(s) 445
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 560
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 607
BspT107I GGYRCC 1 cut(s) 551
BsrI ACTGG 2 cut(s) 166, 503
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 5 cut(s) 37, 53, 391, 619, 641
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 2 cut(s) 547, 645
BstF5I GGATG 3 cut(s) 124, 618, 629
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 2 cut(s) 79, 604
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 2 cut(s) 150, 190
BstUI CGCG 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 459
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 165
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 3 cut(s) 124, 618, 629
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 1 cut(s) 627
CfoI GCGC 2 cut(s) 79, 604
Cfr13I GGNCC 1 cut(s) 442
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 135, 552
CviAII CATG 2 cut(s) 327, 416
CviJI RGCY 6 cut(s) 165, 199, 293, 363, 565, 625
CviKI_1 RGCY 6 cut(s) 165, 199, 293, 363, 565, 625
CviQI GTAC 2 cut(s) 135, 552
DdeI CTNAG 2 cut(s) 547, 645
DraI TTTAAA 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 163
EciI GGCGGA 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 442
Eco88I CYCGRG 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 401
FaeI CATG 2 cut(s) 330, 419
FaiI YATR 6 cut(s) 171, 192, 328, 397, 417, 584
FatI CATG 2 cut(s) 326, 415
FokI GGATG 3 cut(s) 131, 616, 625
FspBI CTAG 5 cut(s) 204, 213, 332, 431, 566
GlaI GCGC 2 cut(s) 78, 603
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 308
HgaI GACGC 1 cut(s) 464
HhaI GCGC 2 cut(s) 79, 604
Hin1II CATG 2 cut(s) 330, 419
Hin6I GCGC 2 cut(s) 77, 602
HinP1I GCGC 2 cut(s) 77, 602
HincII GTYRAC 2 cut(s) 33, 637
HindII GTYRAC 2 cut(s) 33, 637
HindIII AAGCTT 1 cut(s) 361
HpaII CCGG 1 cut(s) 308
HphI GGTGA 3 cut(s) 230, 503, 588
Hpy166II GTNNAC 3 cut(s) 33, 596, 637
Hpy188I TCNGA 3 cut(s) 270, 339, 578
Hpy188III TCNNGA 3 cut(s) 130, 385, 607
Hpy8I GTNNAC 3 cut(s) 33, 596, 637
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 5 cut(s) 37, 53, 391, 619, 641
HpyCH4IV ACGT 2 cut(s) 99, 177
HpyCH4V TGCA 2 cut(s) 399, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 547, 645
HpySE526I ACGT 2 cut(s) 99, 177
Hsp92II CATG 2 cut(s) 330, 419
HspAI GCGC 2 cut(s) 77, 602
KpnI GGTACC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 562
LweI GCATC 4 cut(s) 2, 64, 552, 638
MaeI CTAG 5 cut(s) 204, 213, 332, 431, 566
MaeII ACGT 2 cut(s) 99, 177
MaeIII GTNAC 1 cut(s) 272
MboII GAAGA 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 6 cut(s) 89, 110, 124, 264, 435, 569
MluNI TGGCCA 1 cut(s) 165
MnlI CCTC 5 cut(s) 27, 98, 148, 373, 603
Mox20I TGGCCA 1 cut(s) 165
Mph1103I ATGCAT 1 cut(s) 401
MscI TGGCCA 1 cut(s) 165
MseI TTAA 3 cut(s) 114, 123, 281
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 213
NlaIII CATG 2 cut(s) 330, 419
NlaIV GGNNCC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 605
PaqCI CACCTGC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 553
PspPI GGNCC 1 cut(s) 442
RsaI GTAC 2 cut(s) 136, 553
RsaNI GTAC 2 cut(s) 135, 552
SaqAI TTAA 3 cut(s) 114, 123, 281
Sau96I GGNCC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 4 cut(s) 2, 64, 552, 638
SfcI CTRYAG 2 cut(s) 150, 190
Sfr274I CTCGAG 1 cut(s) 605
SinI GGWCC 1 cut(s) 442
SlaI CTCGAG 1 cut(s) 605
SmlI CTYRAG 4 cut(s) 23, 224, 482, 605
SmoI CTYRAG 4 cut(s) 23, 224, 482, 605
Sse9I AATT 6 cut(s) 89, 110, 124, 264, 435, 569
SsiI CCGC 1 cut(s) 445
SspMI CTAG 5 cut(s) 204, 213, 332, 431, 566
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 5 cut(s) 37, 53, 391, 619, 641
TaiI ACGT 2 cut(s) 102, 180
TaqI TCGA 2 cut(s) 10, 606
TasI AATT 6 cut(s) 89, 110, 124, 264, 435, 569
Tru1I TTAA 3 cut(s) 114, 123, 281
Tru9I TTAA 3 cut(s) 114, 123, 281
TspDTI ATGAA 3 cut(s) 56, 404, 562
TspGWI ACGGA 2 cut(s) 370, 622
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 4 cut(s) 110, 264, 435, 569
XhoI CTCGAG 1 cut(s) 605
XspI CTAG 5 cut(s) 204, 213, 332, 431, 566
Zsp2I ATGCAT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.