RLG00000011748

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000103
Physical Location & Seq
Reverse (-)
12369909 .. 12370781
873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011748

Sequence Viewer

Length: 543 bp
ATGGCCGTTGAGTCCAATCAGAAATTAAAATTATTGCTTCAAGGGACTCGTGGGCTACCTGAAGCCATTAGAAATGATCAGTGGTTTTTCAAAGGAGGGAGAGAATTCACTTCCCTCGCGCTGATTTTAACTCCAAGAATATTTCCGAACAAAACTGAAGTGGTAGCGATGAAGAAAAGTAAAAAAGCCAAGTCCTATTGGAATAAGAAGATGGAGTTGGATAGGATCAGCAGCCTACCAAGTAACGTTACAGAAAAGATATTGTCACATTTGCCAATTAGCGTTGCAGCGAGGACAAGTGTTTTGTCAAGCAAGTGGAGATACAAATTTGCTATGCTTCCGCATCTTGTGTTTGGTTGTTTGTGCCGCTCGAACCTTGTTGATCATGTACTCTTAAATCACGTTGGCCCCATAAGCAAGTTTCAGCTTGTTCAAGGATTTATAGACATTGGAGACATTGATCGCTGGGTTCTTCACCCTTCAAGGTACTCGCTCAAAGAGTTCATACTGCAAATTTCCGTTTGGCAACAGCAGCGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

181

Amino Acids

20.8

Weight (kDa)

10.09

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 341, 367
AclI AACGTT 1 cut(s) 246
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 104, 326, 513
AcuI CTGAAG 2 cut(s) 81, 177
AfaI GTAC 2 cut(s) 390, 488
AfeI AGCGCT 1 cut(s) 536
AgsI TTSAA 4 cut(s) 41, 91, 434, 483
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 427
AluI AGCT 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 536
AoxI GGCC 2 cut(s) 3, 406
ApeKI GCWGC 3 cut(s) 231, 287, 532
ApoI RAATTY 3 cut(s) 104, 326, 513
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspLEI GCGC 2 cut(s) 121, 537
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 467
BauI CACGAG 1 cut(s) 48
BbvI GCAGC 2 cut(s) 243, 299
BccI CCATC 1 cut(s) 205
BclI TGATCA 2 cut(s) 76, 382
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 541
BfoI RGCGCY 1 cut(s) 538
BisI GCNGC 4 cut(s) 232, 288, 367, 533
BlsI GCNGC 4 cut(s) 233, 289, 368, 534
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 1 cut(s) 352
BseXI GCAGC 2 cut(s) 243, 299
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 5, 408
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 2 cut(s) 5, 408
Bsp143I GATC 4 cut(s) 76, 225, 382, 460
BspACI CCGC 2 cut(s) 341, 367
BspANI GGCC 2 cut(s) 5, 408
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 369
BssMI GATC 4 cut(s) 76, 225, 382, 460
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 2 cut(s) 121, 537
BstKTI GATC 4 cut(s) 79, 228, 385, 463
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 4 cut(s) 76, 225, 382, 460
BstMWI GCNNNNNNNGC 2 cut(s) 414, 532
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 243, 299
BsuRI GGCC 2 cut(s) 5, 408
BtgZI GCGATG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 86
CfoI GCGC 2 cut(s) 121, 537
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 2 cut(s) 389, 487
CviAII CATG 1 cut(s) 386
CviJI RGCY 7 cut(s) 5, 55, 65, 188, 234, 408, 427
CviKI_1 RGCY 7 cut(s) 5, 55, 65, 188, 234, 408, 427
CviQI GTAC 2 cut(s) 389, 487
DpnI GATC 4 cut(s) 78, 227, 384, 462
DpnII GATC 4 cut(s) 76, 225, 382, 460
EaeI YGGCCR 1 cut(s) 3
Eco47III AGCGCT 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 81, 177
EcoRI GAATTC 1 cut(s) 104
FaeI CATG 1 cut(s) 389
FaiI YATR 5 cut(s) 335, 387, 413, 443, 506
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 385
FbaI TGATCA 2 cut(s) 76, 382
Fnu4HI GCNGC 4 cut(s) 232, 288, 367, 533
Fsp4HI GCNGC 4 cut(s) 232, 288, 367, 533
FspBI CTAG 1 cut(s) 541
GlaI GCGC 2 cut(s) 120, 536
GluI GCNGC 4 cut(s) 232, 288, 367, 533
GsaI CCCAGC 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 2 cut(s) 5, 408
HhaI GCGC 2 cut(s) 121, 537
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 2 cut(s) 119, 535
HinP1I GCGC 2 cut(s) 119, 535
HinfI GANTC 2 cut(s) 11, 46
HphI GGTGA 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 21, 147
HpyAV CCTTC 1 cut(s) 489
HpyCH4IV ACGT 2 cut(s) 246, 402
HpyCH4V TGCA 2 cut(s) 287, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 532
HpySE526I ACGT 2 cut(s) 246, 402
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 2 cut(s) 119, 535
Ksp22I TGATCA 2 cut(s) 76, 382
Kzo9I GATC 4 cut(s) 76, 225, 382, 460
LpnPI CCDG 2 cut(s) 72, 451
Lsp1109I GCAGC 2 cut(s) 243, 299
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 541
MaeII ACGT 2 cut(s) 246, 402
MaeIII GTNAC 3 cut(s) 242, 247, 264
MalI GATC 4 cut(s) 78, 227, 384, 462
MbiI CCGCTC 1 cut(s) 369
MboI GATC 4 cut(s) 76, 225, 382, 460
MboII GAAGA 3 cut(s) 184, 220, 464
MluCI AATT 6 cut(s) 23, 29, 104, 276, 326, 513
MlyI GAGTC 2 cut(s) 20, 40
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 89, 125, 285
MseI TTAA 3 cut(s) 26, 128, 395
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 414, 532
NdeII GATC 4 cut(s) 76, 225, 382, 460
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 264
PkrI GCNGC 4 cut(s) 233, 289, 368, 534
PleI GAGTC 2 cut(s) 19, 40
PpsI GAGTC 2 cut(s) 19, 40
Psp1406I AACGTT 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 407
RsaI GTAC 2 cut(s) 390, 488
RsaNI GTAC 2 cut(s) 389, 487
SaqAI TTAA 3 cut(s) 26, 128, 395
SatI GCNGC 4 cut(s) 232, 288, 367, 533
Sau3AI GATC 4 cut(s) 76, 225, 382, 460
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 2 cut(s) 20, 40
SetI ASST 6 cut(s) 61, 249, 378, 405, 429, 488
SfaNI GCATC 1 cut(s) 352
Sse9I AATT 6 cut(s) 23, 29, 104, 276, 326, 513
SsiI CCGC 2 cut(s) 341, 367
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 541
TaiI ACGT 2 cut(s) 249, 405
TaqI TCGA 1 cut(s) 371
TasI AATT 6 cut(s) 23, 29, 104, 276, 326, 513
TatI WGTACW 1 cut(s) 388
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 3 cut(s) 26, 128, 395
Tru9I TTAA 3 cut(s) 26, 128, 395
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 3 cut(s) 231, 287, 532
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 185, 493
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 86
XapI RAATTY 3 cut(s) 104, 326, 513
XspI CTAG 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.