Rorug06G0256400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000103
Physical Location & Seq
Reverse (-)
40246908 .. 40251765
4858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0256400.1

Sequence Viewer

Length: 1809 bp
ATGGCTTCAGTAGGGTCCAATAACTCTAGCGAAAGTCTTAAACGCAACTTCTCTGAAGACAATCACGAATCAGATGCCTTGTTTGCCAAGAAGCAAAAGCTTGCTTGGCACAGAAAGTCTCTCCCAATCGCTACAGTTGAGAACCGGCTCGTCCAGGAGGTTTGGAAACATGATACCCTGATAATTGTTGGCGAAACTGGAAGCGGAAAAACAACACAATTACCACAGTATTTGTACAATGCTGGATTTTGTGGAAATGGGAGAGTCATTGGGGTAACTCAACCCAGCTGTGTGGCGGCTGTGAATGTGGCGAAGCGGGTTGCTGAGGAATGTGGTGTTAGATTGGGTGAAACGGTCGGTTATTCCATCAGATTTCAGAATGTGACCTCTAGTTCAACAAGGATTAAGTACATGACAGATGGATCTCTACTGAGGGAAGCGGTATCAGATCCATCTCTCTCTAGGTATTCAGCTATCATTGTGGATGAAGCTCATGAGAGAACTCTTGACACTGATGTATTGCTGGGTGTGCTGAAAAATGTACAAAATGCAAGGTCAGAATCTGTTGAATTGAAATTAATTATCATGTCCGCCAGCTTAGATGCTCGAATTTTCTCCGAATACTTTGGTGGCGCAAGAGCTGTTCACATCCAAGGGAGACAGATTCCTGTTGCTATATTTTATACTTATCATCTTCCACCATCTTATTTACATGCTTCGTTCATTACCATATTTCAGATTCACCTGGAGGAAGAAGCTGGTGACATACTTGTCTTCTTGACCGGTAAAGACGAAATTGAATTTGTAGAAAGACTTATCGAAGAAAAACTTAAACAGTTACCGGAGAATAGTCAAAAACTAGTAGCGGTACCTTTATTTTCATCTCTTCCGTCAGAACAGCAAATGCGAGCTTTTGCACCAGCCTGTCCTGGGTTTCGTAAGGTAGTTTTGGCAACCAATATTGCTGAGACGTCAGTGACAATACCTGGAATCAAGTATGTTATAGACACTGGGGTTGTAAAAGCACACTTCTATAATCCAAACAAAGGGCTGGAACCTTTGATTGTTGTTCCAATTTCGAAAGCACAGGCTCTACAAAGGAGTTGGCGTGCAGGGAGAGAAAGACCAGGGAAATGCTTCTGTCTCTACCCAGAGAATGAATTTTGGAAACTTGAGGATTCAACAAAGCCAGATATCAAGCGGTGCGACCTCTCTAATGCCATTTTGCAACTTAAGGCTTTGGGTGTTCATGATATCACTGGTTTCGACTTCATAGAAAAACCTTCAGGGGAATCTATTATAAAATCACTGGAGCAATTGACCCTGCTAGGTGCTTTGGCAGATGACCGTAAACTGTCAGATCCAGTTGGATGGCAAATGGCTGCCCTTCCCCTACCCCCTATTTATTCAAAAGCTCTAATTAAAGCAAGTGAACTCAACTGCCTGGAAGAGATGTTGATAACTGTTGCAATGCTCTCAGTAGAATCTACGTTTTTCACTCCCCGTGAGAAGTTAGAAGAGGCGAGAACTGCAAGGAAACGCTTTGAAAGTCCAGAGGGAGATCATCTCACTTTGATTAATCTATATCGAGCATCTGATCAGTTTCTCAAGAGTAGATCAGGTCTTAGCACAGGGAACCATGAACAAAATTTCCAGAAATGGTGCAATGAATATTTCATTGATAGTTGCTCCCTGAGGCGTGCTCGTGAGATTCATAGCCAAATTCGAGAAAGTGTTGAACAAATGGGCCTCTCTGTTGCATCTTGTGGGGACAACATGCTTCAGTTTCGTAGATGTCTTGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

602

Amino Acids

67.22

Weight (kDa)

6.7

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 51 - 201 1.7e-06 DEAD/DEAH box helicase
AAA_22 PF13401 60 - 201 1.4e-06 AAA domain
Helicase_C PF00271 246 - 373 5e-10 Helicase conserved C-terminal domain
HA2_C PF21010 466 - 525 2.5e-12 Helicase associated domain (HA2), ratchet-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1301
AasI GACNNNNNNGTC 1 cut(s) 770
AatII GACGTC 1 cut(s) 974
Acc65I GGTACC 1 cut(s) 868
AccB1I GGYRCC 1 cut(s) 868
AciI CCGC 7 cut(s) 204, 296, 316, 440, 591, 866, 1201
AclWI GGATC 3 cut(s) 430, 443, 1355
AcsI RAATTY 5 cut(s) 609, 800, 1160, 1648, 1722
AcuI CTGAAG 3 cut(s) 75, 1269, 1766
AcyI GRCGYC 1 cut(s) 971
AfaI GTAC 4 cut(s) 236, 410, 543, 870
AfiI CCNNNNNNNGG 2 cut(s) 930, 1046
AflII CTTAAG 1 cut(s) 1232
AgeI ACCGGT 1 cut(s) 782
AgsI TTSAA 8 cut(s) 396, 569, 574, 800, 1182, 1410, 1547, 1739
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 6 cut(s) 153, 744, 928, 985, 1126, 1443
AloI GAACNNNNNNTCC 2 cut(s) 1635, 1667
AluBI AGCT 9 cut(s) 100, 288, 473, 491, 597, 641, 758, 911, 1415
AluI AGCT 9 cut(s) 100, 288, 473, 491, 597, 641, 758, 911, 1415
Alw21I GWGCWC 1 cut(s) 1705
Alw26I GTCTC 4 cut(s) 123, 652, 962, 1148
AlwI GGATC 3 cut(s) 430, 443, 1355
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 1 cut(s) 1747
ApeKI GCWGC 2 cut(s) 1382, 1802
ApoI RAATTY 5 cut(s) 609, 800, 1160, 1648, 1722
AseI ATTAAT 2 cut(s) 578, 1578
AsiGI ACCGGT 1 cut(s) 782
Asp700I GAANNNNTTC 1 cut(s) 1136
Asp718I GGTACC 1 cut(s) 868
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 15, 1747
AsuHPI GGTGA 3 cut(s) 359, 734, 773
AsuII TTCGAA 1 cut(s) 1079
AvaII GGWCC 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 1694
BanI GGYRCC 1 cut(s) 868
BauI CACGAG 1 cut(s) 1704
BbsI GAAGAC 2 cut(s) 63, 766
Bbv12I GWGCWC 1 cut(s) 1705
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 1369, 1789
BccI CCATC 5 cut(s) 374, 413, 460, 709, 1365
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
BclI TGATCA 1 cut(s) 1597
BcoDI GTCTC 4 cut(s) 123, 652, 962, 1148
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 5 cut(s) 27, 390, 462, 860, 1328
BfmI CTRYAG 1 cut(s) 132
BfrI CTTAAG 1 cut(s) 1232
BisI GCNGC 3 cut(s) 297, 1383, 1803
BlsI GCNGC 3 cut(s) 298, 1384, 1804
Bme1390I CCNGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 15, 1747
BmiI GGNNCC 4 cut(s) 16, 870, 1056, 1637
BmrFI CCNGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 4 cut(s) 64, 592, 1601, 1769
BmuI ACTGGG 1 cut(s) 1020
BpiI GAAGAC 2 cut(s) 63, 766
BplI GAGNNNNNCTC 4 cut(s) 1551, 1583, 1687, 1719
BpmI CTGGAG 2 cut(s) 767, 1331
Bpu10I CCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 1079
BpuEI CTTGAG 2 cut(s) 1193, 1592
BsaHI GRCGYC 1 cut(s) 971
BsaJI CCNNGG 3 cut(s) 652, 929, 1127
BsaWI WCCGGW 2 cut(s) 782, 841
BsaXI ACNNNNNCTCC 2 cut(s) 1093, 1123
Bsc4I CCNNNNNNNGG 2 cut(s) 930, 1046
Bse118I RCCGGY 2 cut(s) 144, 782
Bse1I ACTGG 5 cut(s) 202, 1015, 1264, 1314, 1364
Bse21I CCTNAGG 1 cut(s) 1694
Bse3DI GCAATG 2 cut(s) 1476, 1672
BseBI CCWGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
BseDI CCNNGG 3 cut(s) 652, 929, 1127
BseGI GGATG 3 cut(s) 490, 648, 1376
BseLI CCNNNNNNNGG 2 cut(s) 930, 1046
BseMI GCAATG 2 cut(s) 1476, 1672
BseMII CTCAG 5 cut(s) 315, 422, 957, 1491, 1685
BseNI ACTGG 5 cut(s) 202, 1015, 1264, 1314, 1364
BseXI GCAGC 2 cut(s) 1369, 1789
BseYI CCCAGC 2 cut(s) 284, 523
BsgI GTGCAG 1 cut(s) 1131
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 1749
BshNI GGYRCC 1 cut(s) 868
BshTI ACCGGT 1 cut(s) 782
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 1705
BsiSI CCGG 3 cut(s) 145, 783, 842
BslFI GGGAC 1 cut(s) 1784
BslI CCNNNNNNNGG 2 cut(s) 930, 1046
BsmAI GTCTC 4 cut(s) 123, 652, 962, 1148
BsmBI CGTCTC 1 cut(s) 962
BsmFI GGGAC 1 cut(s) 1784
BsnI GGCC 1 cut(s) 1749
Bsp119I TTCGAA 1 cut(s) 1079
Bsp1286I GDGCHC 1 cut(s) 1705
Bsp1407I TGTACA 2 cut(s) 234, 541
Bsp143I GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
BspACI CCGC 7 cut(s) 204, 296, 316, 440, 591, 866, 1201
BspANI GGCC 1 cut(s) 1749
BspCNI CTCAG 5 cut(s) 316, 423, 958, 1490, 1686
BspHI TCATGA 2 cut(s) 493, 1249
BspLI GGNNCC 4 cut(s) 16, 870, 1056, 1637
BspPI GGATC 3 cut(s) 430, 443, 1355
BspT104I TTCGAA 1 cut(s) 1079
BspT107I GGYRCC 1 cut(s) 868
BspTI CTTAAG 1 cut(s) 1232
BsrDI GCAATG 2 cut(s) 1476, 1672
BsrFI RCCGGY 2 cut(s) 144, 782
BsrGI TGTACA 2 cut(s) 234, 541
BsrI ACTGG 5 cut(s) 202, 1015, 1264, 1314, 1364
BssAI RCCGGY 2 cut(s) 144, 782
BssECI CCNNGG 3 cut(s) 652, 929, 1127
BssMI GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
BssNI GRCGYC 1 cut(s) 971
BssSI CACGAG 1 cut(s) 1704
BssT1I CCWWGG 1 cut(s) 652
Bst2BI CACGAG 1 cut(s) 1704
Bst2UI CCWGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
Bst4CI ACNGT 7 cut(s) 136, 228, 355, 837, 1349, 1356, 1465
Bst6I CTCTTC 3 cut(s) 891, 1443, 1512
BstACI GRCGYC 1 cut(s) 971
BstAFI CTTAAG 1 cut(s) 1232
BstAUI TGTACA 2 cut(s) 234, 541
BstBI TTCGAA 1 cut(s) 1079
BstC8I GCNNGC 5 cut(s) 102, 595, 909, 1110, 1701
BstDEI CTNAG 7 cut(s) 324, 431, 598, 966, 1477, 1625, 1694
BstF5I GGATG 3 cut(s) 490, 648, 1376
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 6 cut(s) 425, 451, 1363, 1564, 1600, 1619
BstMAI GTCTC 4 cut(s) 123, 652, 962, 1148
BstMBI GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 4 cut(s) 83, 106, 529, 1529
BstNI CCWGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
BstNSI RCATGY 2 cut(s) 716, 1780
BstSCI CCNGG 6 cut(s) 153, 744, 928, 985, 1126, 1443
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 1369, 1789
BstV2I GAAGAC 2 cut(s) 63, 766
BstX2I RGATCY 3 cut(s) 422, 448, 1360
BstXI CCANNNNNNTGG 2 cut(s) 292, 1371
BstYI RGATCY 3 cut(s) 422, 448, 1360
Bsu36I CCTNAGG 1 cut(s) 1694
BsuRI GGCC 1 cut(s) 1749
BtsCI GGATG 3 cut(s) 490, 648, 1376
BtsIMutI CAGTG 5 cut(s) 510, 981, 1008, 1257, 1307
Cac8I GCNNGC 5 cut(s) 102, 595, 909, 1110, 1701
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 2 cut(s) 493, 1249
CfoI GCGC 1 cut(s) 635
Cfr10I RCCGGY 2 cut(s) 144, 782
Cfr13I GGNCC 2 cut(s) 15, 1747
Csp6I GTAC 4 cut(s) 235, 409, 542, 869
CspAI ACCGGT 1 cut(s) 782
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 8 cut(s) 170, 412, 494, 586, 713, 1250, 1640, 1777
CviQI GTAC 4 cut(s) 235, 409, 542, 869
DdeI CTNAG 7 cut(s) 324, 431, 598, 966, 1477, 1625, 1694
DpnI GATC 6 cut(s) 424, 450, 1362, 1563, 1599, 1618
DpnII GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
Eam1104I CTCTTC 3 cut(s) 891, 1443, 1512
EarI CTCTTC 3 cut(s) 891, 1443, 1512
EciI GGCGGA 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 652
Eco32I GATATC 2 cut(s) 1195, 1255
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 3 cut(s) 75, 1269, 1766
Eco81I CCTNAGG 1 cut(s) 1694
EcoRII CCWGG 6 cut(s) 153, 744, 928, 985, 1126, 1443
EcoRV GATATC 2 cut(s) 1195, 1255
EcoT14I CCWWGG 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 652
Esp3I CGTCTC 1 cut(s) 962
FaeI CATG 8 cut(s) 173, 415, 497, 589, 716, 1253, 1643, 1780
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 1 cut(s) 1784
FatI CATG 8 cut(s) 169, 411, 493, 585, 712, 1249, 1639, 1776
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 1597
Fnu4HI GCNGC 3 cut(s) 297, 1383, 1803
FokI GGATG 3 cut(s) 497, 635, 1383
Fsp4HI GCNGC 3 cut(s) 297, 1383, 1803
FspBI CTAG 5 cut(s) 27, 390, 462, 860, 1328
GlaI GCGC 1 cut(s) 634
GluI GCNGC 3 cut(s) 297, 1383, 1803
GsaI CCCAGC 2 cut(s) 288, 527
GsuI CTGGAG 2 cut(s) 767, 1331
HaeIII GGCC 1 cut(s) 1749
HapII CCGG 3 cut(s) 145, 783, 842
HhaI GCGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 971
Hin1II CATG 8 cut(s) 173, 415, 497, 589, 716, 1253, 1643, 1780
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HindIII AAGCTT 1 cut(s) 98
HpaII CCGG 3 cut(s) 145, 783, 842
HphI GGTGA 3 cut(s) 359, 734, 773
Hpy166II GTNNAC 3 cut(s) 646, 1352, 1433
Hpy8I GTNNAC 3 cut(s) 646, 1352, 1433
HpyAV CCTTC 2 cut(s) 1293, 1397
HpyCH4III ACNGT 7 cut(s) 136, 228, 355, 837, 1349, 1356, 1465
HpyCH4IV ACGT 2 cut(s) 971, 1490
HpyCH4V TGCA 8 cut(s) 551, 917, 1112, 1228, 1469, 1532, 1665, 1760
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 106, 529, 1529
HpyF3I CTNAG 7 cut(s) 324, 431, 598, 966, 1477, 1625, 1694
HpySE526I ACGT 2 cut(s) 971, 1490
Hsp92I GRCGYC 1 cut(s) 971
Hsp92II CATG 8 cut(s) 173, 415, 497, 589, 716, 1253, 1643, 1780
HspAI GCGC 1 cut(s) 633
KpnI GGTACC 1 cut(s) 872
Ksp22I TGATCA 1 cut(s) 1597
Kzo9I GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
LmnI GCTCC 2 cut(s) 1312, 1694
Lsp1109I GCAGC 2 cut(s) 1369, 1789
LweI GCATC 4 cut(s) 64, 592, 1601, 1769
MaeI CTAG 5 cut(s) 27, 390, 462, 860, 1328
MaeII ACGT 2 cut(s) 971, 1490
MaeIII GTNAC 5 cut(s) 274, 382, 761, 837, 976
MalI GATC 6 cut(s) 424, 450, 1362, 1563, 1599, 1618
MboI GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
MboII GAAGA 8 cut(s) 68, 686, 764, 766, 833, 878, 1460, 1529
MfeI CAATTG 1 cut(s) 1316
MflI RGATCY 3 cut(s) 422, 448, 1360
MhlI GDGCHC 1 cut(s) 1705
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 1348
MroXI GAANNNNTTC 1 cut(s) 1136
MseI TTAA 8 cut(s) 39, 405, 578, 831, 1233, 1422, 1578, 1807
MspA1I CMGCKG 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 1232
MspI CCGG 3 cut(s) 145, 783, 842
MspR9I CCNGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
MunI CAATTG 1 cut(s) 1316
MvaI CCWGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
MwoI GCNNNNNNNGC 4 cut(s) 83, 106, 529, 1529
NdeII GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
NlaIII CATG 8 cut(s) 173, 415, 497, 589, 716, 1253, 1643, 1780
NlaIV GGNNCC 4 cut(s) 16, 870, 1056, 1637
NmuCI GTSAC 3 cut(s) 382, 761, 976
NspI RCATGY 2 cut(s) 716, 1780
NspV TTCGAA 1 cut(s) 1079
PagI TCATGA 2 cut(s) 493, 1249
PdmI GAANNNNTTC 1 cut(s) 1136
PfeI GAWTC 9 cut(s) 68, 560, 664, 739, 990, 1178, 1292, 1484, 1711
PfoI TCCNGGA 1 cut(s) 153
PinAI ACCGGT 1 cut(s) 782
PkrI GCNGC 3 cut(s) 298, 1384, 1804
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PshBI ATTAAT 2 cut(s) 578, 1578
PsiI TTATAA 1 cut(s) 1301
Psp6I CCWGG 6 cut(s) 153, 744, 928, 985, 1126, 1443
PspFI CCCAGC 2 cut(s) 284, 523
PspGI CCWGG 6 cut(s) 153, 744, 928, 985, 1126, 1443
PspN4I GGNNCC 4 cut(s) 16, 870, 1056, 1637
PspPI GGNCC 2 cut(s) 15, 1747
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 422, 448, 1360
PvuII CAGCTG 1 cut(s) 288
RsaI GTAC 4 cut(s) 236, 410, 543, 870
RsaNI GTAC 4 cut(s) 235, 409, 542, 869
SaqAI TTAA 8 cut(s) 39, 405, 578, 831, 1233, 1422, 1578, 1807
SatI GCNGC 3 cut(s) 297, 1383, 1803
Sau3AI GATC 6 cut(s) 422, 448, 1360, 1561, 1597, 1616
Sau96I GGNCC 2 cut(s) 15, 1747
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 6 cut(s) 155, 746, 930, 987, 1128, 1445
SduI GDGCHC 1 cut(s) 1705
SfaNI GCATC 4 cut(s) 64, 592, 1601, 1769
SfcI CTRYAG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 1079
SinI GGWCC 1 cut(s) 15
SmlI CTYRAG 3 cut(s) 1172, 1232, 1607
SmoI CTYRAG 3 cut(s) 1172, 1232, 1607
SpeI ACTAGT 1 cut(s) 859
SsiI CCGC 7 cut(s) 204, 296, 316, 440, 591, 866, 1201
SspI AATATT 2 cut(s) 961, 1673
SspMI CTAG 5 cut(s) 27, 390, 462, 860, 1328
StyD4I CCNGG 6 cut(s) 153, 744, 928, 985, 1126, 1443
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 7 cut(s) 136, 228, 355, 837, 1349, 1356, 1465
TaiI ACGT 2 cut(s) 974, 1493
TaqI TCGA 6 cut(s) 607, 819, 1079, 1266, 1588, 1726
TatI WGTACW 3 cut(s) 234, 408, 541
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 9 cut(s) 68, 560, 664, 739, 990, 1178, 1292, 1484, 1711
Tru1I TTAA 8 cut(s) 39, 405, 578, 831, 1233, 1422, 1578, 1807
Tru9I TTAA 8 cut(s) 39, 405, 578, 831, 1233, 1422, 1578, 1807
TscAI CASTG 5 cut(s) 517, 981, 1015, 1264, 1314
TseFI GTSAC 3 cut(s) 382, 761, 976
TseI GCWGC 2 cut(s) 1382, 1802
Tsp45I GTSAC 3 cut(s) 382, 761, 976
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 5 cut(s) 517, 981, 1015, 1264, 1314
Vha464I CTTAAG 1 cut(s) 1232
VpaK11BI GGWCC 1 cut(s) 15
VspI ATTAAT 2 cut(s) 578, 1578
XapI RAATTY 5 cut(s) 609, 800, 1160, 1648, 1722
XceI RCATGY 2 cut(s) 716, 1780
XmnI GAANNNNTTC 1 cut(s) 1136
XspI CTAG 5 cut(s) 27, 390, 462, 860, 1328
ZraI GACGTC 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.