RLG00000015129

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000103
Physical Location & Seq
Forward (+)
62106267 .. 62107826
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015129

Sequence Viewer

Length: 1335 bp
ATGGAGTTGGACAGAATTAGCAGTTTACCAAATGATGTCACAGAAAAGATTTTGTCACTTTTGCCGCTTAGGGAAGCAGTGAGGACAAGTGTTTTATCCAGCAAGTGGAGGTACAAATCGGCCATGCTTCAAGATCTAGAATTTAATGAATATGACTGGAGGGAAAGCCAAAATCGGGAGGTCGATGACTATGATGATCAAATCCAAACAACCTTTGTGAACATGGTTGATCACGTACTCTTACTTCATATTGGCCCCATTCGCAAGTTCGCGCTGTTTGCTGATGAGGTAGCCACTAGAGATCTTGATCGATGGCTTACTCATCTATCAAGACACTCGATCAAAGAGTTGGTACTTTGTCTCTGGGTATCTGAATACCACATTCCATTATGTGTGTTTTCTTGTCAAGATCTCGTTCTTTTGGATTTAACTAAATATTTTCTTATGGATTCAAATTTAACTGAGGTTTGGCTCAAACCTCCGTCAACGTTCAAAGGATTCAGGAGCTTGAAGAGCCTTCAACTTGTGGGCATCACCGTGGCCCAAAATGTGTTTGAAAATTTGATATGTTGCAGTCCTCTGCTTGAGAGATTAATATTGCTACATTGTGATAGTGTCACCACTCTCAATATTGATGCACCAAATCTCAAATTTTTAAACATTTTAGGTATCTTTGATGTTGTCAATCTCAAAAGTACCCAAAATCTTACGGATGCTTCAATCGGTGTGACCATCTATACTGGTGGTCCTAACCAAAGATGGGTTCCTGACAGTTGGTTTCCTAGCAGTTCTAGCAATTTGCACAAGATTTTTGATCACCTCCCTTGCATTCGAAAGCTCGCAATTAAGTTGCACTGTTTAAAGTATCTGTCTCTTGGTGCCTTGCCCGAAAAGCTTCCTAAATCATGTGAATATCTGAATGTTCTTTCTATAGACATATGCTTCGATGATCCGGATGCAATTCTAACTGCTCTATGCATTCTGAGAAGCTCCCCTGCTCTACAGGAATTAGAAATTCTTATGGATGGTAGAAAGAAACTCACAAGGAGACCCTGGGTTGTCGAAGAACAGAAATGTTCTTGTTTAGATGTGAGCTACAATTGCACACTTTCTCAACTGCGACTTGTGAAAATAACTGACATCTCCGGTGTTAAAGCTGAACTAGATTTCATCAGATTTCTACTTTTAAGTTCACCTCTGCTGGAGAGAATGACTATCACACCTCCTCGATTTCCTAAGGCTGCTTCTGTGGATGGTTTTCCGAAACTAGTAAAAGAGCTACTCCAGTTTAAACGTGAATCAAAGCACGCAGAGATTATTCTCCTGGACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

445

Amino Acids

50.83

Weight (kDa)

6.1

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 38 1.8e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 95 - 406 2.2e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 102 - 221 6.7e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 368 - 406 9.6e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 105
AccII CGCG 1 cut(s) 272
AccIII TCCGGA 1 cut(s) 952
AciI CCGC 1 cut(s) 65
AclI AACGTT 1 cut(s) 488
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 5 cut(s) 140, 454, 559, 650, 1014
AfaI GTAC 4 cut(s) 113, 237, 354, 697
AfiI CCNNNNNNNGG 3 cut(s) 105, 175, 760
AgsI TTSAA 7 cut(s) 131, 453, 493, 511, 521, 557, 720
AhlI ACTAGT 1 cut(s) 1267
AjnI CCWGG 2 cut(s) 1052, 1323
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 7 cut(s) 507, 838, 895, 990, 1095, 1157, 1279
AluI AGCT 7 cut(s) 507, 838, 895, 990, 1095, 1157, 1279
Alw26I GTCTC 3 cut(s) 365, 876, 1042
AlwI GGATC 1 cut(s) 944
Aor13HI TCCGGA 1 cut(s) 952
AoxI GGCC 3 cut(s) 120, 253, 540
ApeKI GCWGC 1 cut(s) 1241
ApoI RAATTY 5 cut(s) 140, 454, 559, 650, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
AseI ATTAAT 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 894
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 4 cut(s) 254, 541, 746, 1327
AsuHPI GGTGA 4 cut(s) 526, 610, 809, 1185
AsuII TTCGAA 1 cut(s) 832
AvaII GGWCC 2 cut(s) 746, 1327
AxyI CCTNAGG 1 cut(s) 1236
BanI GGYRCC 1 cut(s) 878
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BbvI GCAGC 1 cut(s) 1228
BccI CCATC 5 cut(s) 306, 740, 753, 1019, 1247
BciT130I CCWGG 2 cut(s) 1054, 1325
BclI TGATCA 3 cut(s) 196, 229, 814
BcoDI GTCTC 3 cut(s) 365, 876, 1042
BcuI ACTAGT 1 cut(s) 1267
BfaI CTAG 6 cut(s) 137, 297, 783, 792, 1163, 1268
BfmI CTRYAG 2 cut(s) 930, 1001
BglII AGATCT 3 cut(s) 133, 301, 409
BisI GCNGC 2 cut(s) 65, 1242
BlsI GCNGC 2 cut(s) 66, 1243
Bme1390I CCNGG 2 cut(s) 1054, 1325
Bme18I GGWCC 2 cut(s) 746, 1327
BmgT120I GGNCC 4 cut(s) 254, 541, 746, 1327
BmiI GGNNCC 4 cut(s) 256, 765, 880, 1329
BmrFI CCNGG 2 cut(s) 1054, 1325
BmsI GCATC 4 cut(s) 540, 625, 703, 946
BpmI CTGGAG 3 cut(s) 178, 1223, 1268
Bpu10I CCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 832
BpuEI CTTGAG 1 cut(s) 605
Bsa29I ATCGAT 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 1042
BsaJI CCNNGG 3 cut(s) 537, 1052, 1053
BsaWI WCCGGW 2 cut(s) 952, 1145
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 175, 760
Bse1I ACTGG 3 cut(s) 161, 745, 1285
Bse21I CCTNAGG 1 cut(s) 1236
Bse8I GATNNNNATC 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 952
BseBI CCWGG 2 cut(s) 1054, 1325
BseCI ATCGAT 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 537, 1052, 1053
BseGI GGATG 4 cut(s) 718, 961, 1030, 1258
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 105, 175, 760
BseMII CTCAG 2 cut(s) 453, 974
BseNI ACTGG 3 cut(s) 161, 745, 1285
BseRI GAGGAG 1 cut(s) 1215
BseXI GCAGC 1 cut(s) 1228
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 3 cut(s) 122, 255, 542
BshNI GGYRCC 1 cut(s) 878
BshVI ATCGAT 1 cut(s) 310
BsiSI CCGG 2 cut(s) 953, 1146
BslI CCNNNNNNNGG 3 cut(s) 105, 175, 760
BsmAI GTCTC 3 cut(s) 365, 876, 1042
BsmI GAATGC 2 cut(s) 828, 978
BsnI GGCC 3 cut(s) 122, 255, 542
Bso31I GGTCTC 1 cut(s) 1042
Bsp119I TTCGAA 1 cut(s) 832
Bsp13I TCCGGA 1 cut(s) 952
Bsp143I GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
BspACI CCGC 1 cut(s) 65
BspANI GGCC 3 cut(s) 122, 255, 542
BspCNI CTCAG 2 cut(s) 454, 975
BspDI ATCGAT 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 952
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 4 cut(s) 256, 765, 880, 1329
BspPI GGATC 1 cut(s) 944
BspQI GCTCTTC 1 cut(s) 506
BspT104I TTCGAA 1 cut(s) 832
BspT107I GGYRCC 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 1042
BsrI ACTGG 3 cut(s) 161, 745, 1285
BssECI CCNNGG 3 cut(s) 537, 1052, 1053
BssMI GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
Bst2UI CCWGG 2 cut(s) 1054, 1325
Bst4CI ACNGT 3 cut(s) 538, 773, 857
Bst6I CTCTTC 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 840, 1308
BstDEI CTNAG 4 cut(s) 68, 462, 983, 1236
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 4 cut(s) 718, 961, 1030, 1258
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 9 cut(s) 136, 199, 232, 304, 310, 342, 412, 817, 952
BstMAI GTCTC 3 cut(s) 365, 876, 1042
BstMBI GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
BstMWI GCNNNNNNNGC 6 cut(s) 261, 278, 513, 792, 892, 1101
BstNI CCWGG 2 cut(s) 1054, 1325
BstSCI CCNGG 2 cut(s) 1052, 1323
BstSFI CTRYAG 2 cut(s) 930, 1001
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 1228
BstX2I RGATCY 3 cut(s) 133, 301, 409
BstYI RGATCY 3 cut(s) 133, 301, 409
Bsu15I ATCGAT 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 3 cut(s) 122, 255, 542
BsuTUI ATCGAT 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 4 cut(s) 718, 961, 1030, 1258
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 853
Cac8I GCNNGC 2 cut(s) 840, 1308
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 4 cut(s) 254, 541, 746, 1327
ClaI ATCGAT 1 cut(s) 310
Csp6I GTAC 4 cut(s) 112, 236, 353, 696
CviAII CATG 3 cut(s) 124, 223, 906
CviQI GTAC 4 cut(s) 112, 236, 353, 696
DdeI CTNAG 4 cut(s) 68, 462, 983, 1236
DpnI GATC 9 cut(s) 135, 198, 231, 303, 309, 341, 411, 816, 951
DpnII GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
DraI TTTAAA 3 cut(s) 657, 861, 1291
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco31I GGTCTC 1 cut(s) 1042
Eco47I GGWCC 2 cut(s) 746, 1327
Eco81I CCTNAGG 1 cut(s) 1236
EcoRII CCWGG 2 cut(s) 1052, 1323
EcoT22I ATGCAT 1 cut(s) 980
FaeI CATG 3 cut(s) 127, 226, 909
FatI CATG 3 cut(s) 123, 222, 905
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 3 cut(s) 196, 229, 814
Fnu4HI GCNGC 2 cut(s) 65, 1242
FokI GGATG 4 cut(s) 725, 968, 1037, 1265
Fsp4HI GCNGC 2 cut(s) 65, 1242
FspBI CTAG 6 cut(s) 137, 297, 783, 792, 1163, 1268
GlaI GCGC 1 cut(s) 273
GluI GCNGC 2 cut(s) 65, 1242
GsuI CTGGAG 3 cut(s) 178, 1223, 1268
HaeIII GGCC 3 cut(s) 122, 255, 542
HapII CCGG 2 cut(s) 953, 1146
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 127, 226, 909
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 3 cut(s) 449, 498, 1298
HpaII CCGG 2 cut(s) 953, 1146
HphI GGTGA 4 cut(s) 526, 610, 809, 1185
Hpy166II GTNNAC 4 cut(s) 26, 220, 486, 1193
Hpy188I TCNGA 5 cut(s) 373, 918, 984, 1175, 1263
Hpy188III TCNNGA 9 cut(s) 131, 137, 176, 305, 330, 407, 502, 767, 953
Hpy8I GTNNAC 4 cut(s) 26, 220, 486, 1193
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 3 cut(s) 538, 773, 857
HpyCH4IV ACGT 3 cut(s) 234, 488, 1294
HpyCH4V TGCA 8 cut(s) 573, 638, 802, 828, 853, 959, 978, 1104
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 278, 513, 792, 892, 1101
HpyF3I CTNAG 4 cut(s) 68, 462, 983, 1236
HpySE526I ACGT 3 cut(s) 234, 488, 1294
Hsp92II CATG 3 cut(s) 127, 226, 909
HspAI GCGC 1 cut(s) 272
Kpn2I TCCGGA 1 cut(s) 952
Ksp22I TGATCA 3 cut(s) 196, 229, 814
Kzo9I GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
LguI GCTCTTC 1 cut(s) 506
LmnI GCTCC 2 cut(s) 504, 995
Lsp1109I GCAGC 1 cut(s) 1228
LweI GCATC 4 cut(s) 540, 625, 703, 946
MaeI CTAG 6 cut(s) 137, 297, 783, 792, 1163, 1268
MaeII ACGT 3 cut(s) 234, 488, 1294
MaeIII GTNAC 4 cut(s) 37, 54, 616, 727
MalI GATC 9 cut(s) 135, 198, 231, 303, 309, 341, 411, 816, 951
MboI GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
MboII GAAGA 2 cut(s) 523, 1076
MfeI CAATTG 1 cut(s) 1099
MflI RGATCY 3 cut(s) 133, 301, 409
Mph1103I ATGCAT 1 cut(s) 980
MroI TCCGGA 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 894
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 2 cut(s) 953, 1146
MspR9I CCNGG 2 cut(s) 1054, 1325
MssI GTTTAAAC 1 cut(s) 1291
MunI CAATTG 1 cut(s) 1099
Mva1269I GAATGC 2 cut(s) 828, 978
MvaI CCWGG 2 cut(s) 1054, 1325
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 6 cut(s) 261, 278, 513, 792, 892, 1101
NdeI CATATG 1 cut(s) 938
NdeII GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
NlaIII CATG 3 cut(s) 127, 226, 909
NlaIV GGNNCC 4 cut(s) 256, 765, 880, 1329
NmuCI GTSAC 4 cut(s) 37, 54, 616, 727
NsiI ATGCAT 1 cut(s) 980
NspV TTCGAA 1 cut(s) 832
PasI CCCWGGG 1 cut(s) 1053
PciSI GCTCTTC 1 cut(s) 506
PctI GAATGC 2 cut(s) 828, 978
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 3 cut(s) 449, 498, 1298
PflMI CCANNNNNTGG 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 1323
PkrI GCNGC 2 cut(s) 66, 1243
PmeI GTTTAAAC 1 cut(s) 1291
Ppu21I YACGTR 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 593
Psp1406I AACGTT 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 1052, 1323
PspGI CCWGG 2 cut(s) 1052, 1323
PspN4I GGNNCC 4 cut(s) 256, 765, 880, 1329
PspPI GGNCC 4 cut(s) 254, 541, 746, 1327
PsuI RGATCY 3 cut(s) 133, 301, 409
RsaI GTAC 4 cut(s) 113, 237, 354, 697
RsaNI GTAC 4 cut(s) 112, 236, 353, 696
RseI CAYNNNNRTG 1 cut(s) 536
SapI GCTCTTC 1 cut(s) 506
SatI GCNGC 2 cut(s) 65, 1242
Sau3AI GATC 9 cut(s) 133, 196, 229, 301, 307, 339, 409, 814, 949
Sau96I GGNCC 4 cut(s) 254, 541, 746, 1327
ScrFI CCNGG 2 cut(s) 1054, 1325
SfaNI GCATC 4 cut(s) 540, 625, 703, 946
SfcI CTRYAG 2 cut(s) 930, 1001
SfuI TTCGAA 1 cut(s) 832
SinI GGWCC 2 cut(s) 746, 1327
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SpeI ACTAGT 1 cut(s) 1267
SsiI CCGC 1 cut(s) 65
SspI AATATT 3 cut(s) 437, 597, 631
SspMI CTAG 6 cut(s) 137, 297, 783, 792, 1163, 1268
StyD4I CCNGG 2 cut(s) 1052, 1323
TaaI ACNGT 3 cut(s) 538, 773, 857
TaiI ACGT 3 cut(s) 237, 491, 1297
TaqI TCGA 7 cut(s) 183, 310, 338, 832, 945, 1062, 1228
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 449, 498, 1298
TscAI CASTG 2 cut(s) 84, 860
TseFI GTSAC 4 cut(s) 37, 54, 616, 727
TseI GCWGC 1 cut(s) 1241
Tsp45I GTSAC 4 cut(s) 37, 54, 616, 727
TspDTI ATGAA 3 cut(s) 162, 236, 1159
TspGWI ACGGA 2 cut(s) 471, 725
TspRI CASTG 2 cut(s) 84, 860
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 746, 1327
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 5 cut(s) 140, 454, 559, 650, 1014
XbaI TCTAGA 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 6 cut(s) 137, 297, 783, 792, 1163, 1268
Zsp2I ATGCAT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.