RLG00000014028

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
45922391 .. 45923469
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014028

Sequence Viewer

Length: 771 bp
ATGATTCATTTAAAGCTGAAGAATGGTTTTCTAAAACCTTTGCCCACATTCAAAGGCTTCAGGAGCTTGAAAAGACTTGATATTGTGCGCGTTACCTTGGCCCAAGATGTTCTTGAAAATCTTATTGTTTGTTGTCCTCTTCTCAAGACATTGACTTTCATAGACTGTGATGGTTTCACCCGTCTCAAGATTGATGCTCCAAAACTCCAATTCTTAGGCTTTAGGGGTCGTTTTGATGATGTTATTCTTGAAAACACCATAAATCTCGATGCTGTTACCATTTATCTGGAGGCTAATGTTGACCAAAAATGGGTTCCCTGTAGTTCTAGCAATCTGTATTTGGCTGTTAGTGCCTTGACAAGAAAGGTGCCTAAACCATGTTTGCATCTGAAATTTCTTACTATAGAGATACACTTTAATGATCTGGAGGAGATTTTAACTGCTGTACGCCTTCTGAGAAGCTCCCCTGCTTTACAAGAACTAGAAATTGCCGCCTTCCCAAAGGATCGAGCTGTTGTGGGAGAAGTGAACTCTTGGTTAGATGACAACCTCATTTGGTCATTCACTAAACTGCGACTTGTGAAAATAACCAGCATCTCTGGTGCCAAAGCTGAATTAGATTTCATTAGATTTTTGCTTTTAAGTCCACCTGTGCTTCAGAGGATGACTATTAAGCCTGCTTCTGTCAATGGTTCTTCAGAACTGCTAAAAAAGTTGCTCCGGCTTGGGCGTGCCTCGGTGCATTCAGAGATAATCTACTTGGACCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

28.95

Weight (kDa)

9.19

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 3 - 72 1.1e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 14 - 95 1e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 367, 602
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 492
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 4 cut(s) 38, 43, 641, 681
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 4 cut(s) 52, 70, 116, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 5 cut(s) 16, 66, 462, 512, 611
AluI AGCT 5 cut(s) 16, 66, 462, 512, 611
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 513
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 100, 763
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 763
BanI GGYRCC 2 cut(s) 367, 602
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 327, 482
BfmI CTRYAG 2 cut(s) 319, 402
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
Bme18I GGWCC 1 cut(s) 763
BmgT120I GGNCC 2 cut(s) 100, 763
BmiI GGNNCC 4 cut(s) 315, 369, 604, 765
BmsI GCATC 4 cut(s) 184, 259, 394, 603
BpmI CTGGAG 2 cut(s) 308, 446
BpuEI CTTGAG 2 cut(s) 128, 170
BsaJI CCNNGG 2 cut(s) 96, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 96, 735
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 2 cut(s) 367, 602
BsiSI CCGG 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 421, 505
BspACI CCGC 1 cut(s) 492
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 4 cut(s) 315, 369, 604, 765
BspPI GGATC 1 cut(s) 513
BspT107I GGYRCC 2 cut(s) 367, 602
BssECI CCNNGG 2 cut(s) 96, 735
BssMI GATC 2 cut(s) 421, 505
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 678, 732
BstDEI CTNAG 2 cut(s) 214, 455
BstF5I GGATG 1 cut(s) 669
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 424, 508
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 421, 505
BstMWI GCNNNNNNNGC 2 cut(s) 63, 350
BstSFI CTRYAG 2 cut(s) 319, 402
BstUI CGCG 1 cut(s) 90
BstXI CCANNNNNNTGG 1 cut(s) 286
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 669
Cac8I GCNNGC 2 cut(s) 678, 732
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 100, 763
Csp6I GTAC 1 cut(s) 446
CviAII CATG 1 cut(s) 378
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 2 cut(s) 214, 455
DpnI GATC 2 cut(s) 423, 507
DpnII GATC 2 cut(s) 421, 505
DraI TTTAAA 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 4 cut(s) 38, 43, 641, 681
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 1 cut(s) 381
FaiI YATR 4 cut(s) 161, 260, 379, 404
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 1 cut(s) 676
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 2 cut(s) 327, 482
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 492
GsuI CTGGAG 2 cut(s) 308, 446
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 721
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 381
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 721
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 3 cut(s) 301, 529, 647
Hpy188I TCNGA 5 cut(s) 390, 456, 660, 700, 748
Hpy188III TCNNGA 8 cut(s) 61, 113, 145, 187, 248, 266, 287, 425
Hpy8I GTNNAC 3 cut(s) 301, 529, 647
HpyAV CCTTC 2 cut(s) 461, 505
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 385, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 350
HpyF3I CTNAG 2 cut(s) 214, 455
Hsp92II CATG 1 cut(s) 381
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 421, 505
LmnI GCTCC 4 cut(s) 63, 202, 467, 723
LweI GCATC 4 cut(s) 184, 259, 394, 603
MaeI CTAG 2 cut(s) 327, 482
MaeIII GTNAC 2 cut(s) 91, 274
MalI GATC 2 cut(s) 423, 507
MboI GATC 2 cut(s) 421, 505
MboII GAAGA 3 cut(s) 31, 131, 687
MluCI AATT 4 cut(s) 209, 392, 486, 614
MnlI CCTC 6 cut(s) 147, 283, 421, 560, 654, 745
MseI TTAA 5 cut(s) 11, 417, 437, 641, 672
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 1 cut(s) 721
Mva1269I GAATGC 1 cut(s) 742
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 63, 350
NdeII GATC 2 cut(s) 421, 505
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 4 cut(s) 315, 369, 604, 765
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 493
PspN4I GGNNCC 4 cut(s) 315, 369, 604, 765
PspPI GGNCC 2 cut(s) 100, 763
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 5 cut(s) 11, 417, 437, 641, 672
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 421, 505
Sau96I GGNCC 2 cut(s) 100, 763
SfaNI GCATC 4 cut(s) 184, 259, 394, 603
SfcI CTRYAG 2 cut(s) 319, 402
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 143, 185
SmoI CTYRAG 2 cut(s) 143, 185
Sse9I AATT 4 cut(s) 209, 392, 486, 614
SsiI CCGC 1 cut(s) 492
SspMI CTAG 2 cut(s) 327, 482
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 267, 508
TasI AATT 4 cut(s) 209, 392, 486, 614
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 5 cut(s) 11, 417, 437, 641, 672
Tru9I TTAA 5 cut(s) 11, 417, 437, 641, 672
TspDTI ATGAA 2 cut(s) 148, 613
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 1 cut(s) 392
XspI CTAG 2 cut(s) 327, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.