Rw6G004430

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000103
Physical Location & Seq
Reverse (-)
7064307 .. 7065191
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004430.1

Sequence Viewer

Length: 885 bp
ATGGAGATGGATAGAATTAGCAGTTTACCAAATGATGTCATAGAAAAGATTTTGTCATGTTTGCCGCTTAGGGAAGCAGTGAGGACAAGTGTTTTATCCAGCAAGTGGAGATACAAATCGGCCATGCTTCAAGGTCTAGAATTTGATGAGTGTGACTGGGGGGCGTACCAATTTCGAGATGCTGATGACGTTGATATTGAATTGTTCAAATACTTTTTGACCATGATTGATCATGTGCTCTTACTTCATATCGTCCCCATACGCAAGTTCAAGCTATTCTCTGCTATGAATGTGGTATCCACTAGAGATATTGATCGATGGATTACTCATCTATCAAGAAACTCGGTTAAAGAGTTGACACTTGACCTTTGGATACGGCCTGAATACAACATTCCATTCTCTCTGTTTTCATGTCAAGTTCTTGTTCATTTGGAGTTAAAGATGTGTTCGCTCAAACCTCCGTCAACATTCAAAGGGTTCAAGAGTTTGAAGAGTCTTCAACTCCTGCGTGTTGACATGGCCCAAGATGTGTTTGAAAGTTTGATTCGTTGCAGTCCTCTGCTCGAGAGGTTAACATTGCTACATTGTGACGGTGTCACCAATCTCAAAATTGATGCACCAAATCTCCAATATGTGCACGTTTTAGGTGTTTTTAATGTCATTAACCTTGAGAATGCCTCAAGTATTACTGAGGCTGAAATTTGTATGAACATCCATAATGATCAAATAGGGGTTCCTGCCAGTTGGATTCCTGCCTGCAATTCTAGCAATTTGCTCAAGATCTTTGATCACCTACCTCATATTCGAAGGCTTGAAATTAAGAGGCGCTTTTTAGAGGTAATGTGTTTGCAAATTTGTTACTTGATCTTCAACATTGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

294

Amino Acids

34.1

Weight (kDa)

6.5

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 38 7.1e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 90 - 224 3.8e-19 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 104 - 277 1.6e-17 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AciI CCGC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 3 cut(s) 140, 699, 852
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw21I GWGCWC 2 cut(s) 240, 639
Alw44I GTGCAC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 3 cut(s) 120, 377, 519
ApaLI GTGCAC 1 cut(s) 635
ApoI RAATTY 3 cut(s) 140, 699, 852
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 2 cut(s) 589, 782
AsuII TTCGAA 1 cut(s) 805
AvaI CYCGRG 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 240, 639
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 392
BciVI GTATCC 2 cut(s) 307, 366
BclI TGATCA 3 cut(s) 229, 721, 787
BfaI CTAG 3 cut(s) 137, 303, 765
BfoI RGCGCY 1 cut(s) 829
BfuI GTATCC 2 cut(s) 307, 366
BglII AGATCT 1 cut(s) 780
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 1 cut(s) 735
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 169, 604
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 488
BplI GAGNNNNNCTC 2 cut(s) 662, 694
Bpu10I CCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 805
BpuEI CTTGAG 3 cut(s) 664, 689, 761
Bsa29I ATCGAT 1 cut(s) 316
BsaBI GATNNNNATC 2 cut(s) 115, 312
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 161, 741
Bse3DI GCAATG 1 cut(s) 575
Bse8I GATNNNNATC 2 cut(s) 115, 312
BseCI ATCGAT 1 cut(s) 316
BseGI GGATG 1 cut(s) 711
BseJI GATNNNNATC 2 cut(s) 115, 312
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 161, 741
BseSI GKGCMC 1 cut(s) 639
BshFI GGCC 3 cut(s) 122, 379, 521
BshVI ATCGAT 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 240, 639
BsiHKCI CYCGRG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 3 cut(s) 122, 379, 521
BsoBI CYCGRG 1 cut(s) 563
Bsp119I TTCGAA 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 240, 639
Bsp143I GATC 6 cut(s) 229, 313, 721, 780, 787, 864
BspACI CCGC 1 cut(s) 65
BspANI GGCC 3 cut(s) 122, 379, 521
BspCNI CTCAG 1 cut(s) 682
BspDI ATCGAT 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 805
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 2 cut(s) 161, 741
BssMI GATC 6 cut(s) 229, 313, 721, 780, 787, 864
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 2 cut(s) 68, 690
BstF5I GGATG 1 cut(s) 711
BstH2I RGCGCY 1 cut(s) 829
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 6 cut(s) 232, 316, 724, 783, 790, 867
BstMBI GATC 6 cut(s) 229, 313, 721, 780, 787, 864
BstMWI GCNNNNNNNGC 1 cut(s) 765
BstSLI GKGCMC 1 cut(s) 639
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
Bsu15I ATCGAT 1 cut(s) 316
BsuI GTATCC 2 cut(s) 307, 366
BsuRI GGCC 3 cut(s) 122, 379, 521
BsuTUI ATCGAT 1 cut(s) 316
BtsCI GGATG 1 cut(s) 711
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 757
CfoI GCGC 1 cut(s) 828
Cfr13I GGNCC 1 cut(s) 520
ClaI ATCGAT 1 cut(s) 316
Csp6I GTAC 1 cut(s) 166
CviAII CATG 6 cut(s) 57, 124, 223, 233, 411, 517
CviJI RGCY 6 cut(s) 122, 274, 379, 521, 695, 811
CviKI_1 RGCY 6 cut(s) 122, 274, 379, 521, 695, 811
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 68, 690
DpnI GATC 6 cut(s) 231, 315, 723, 782, 789, 866
DpnII GATC 6 cut(s) 229, 313, 721, 780, 787, 864
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 563
FaeI CATG 6 cut(s) 60, 127, 226, 236, 414, 520
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 1 cut(s) 239
FatI CATG 6 cut(s) 56, 123, 222, 232, 410, 516
FbaI TGATCA 3 cut(s) 229, 721, 787
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 3 cut(s) 137, 303, 765
GlaI GCGC 1 cut(s) 827
GluI GCNGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 829
HaeIII GGCC 3 cut(s) 122, 379, 521
HhaI GCGC 1 cut(s) 828
Hin1II CATG 6 cut(s) 60, 127, 226, 236, 414, 520
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 4 cut(s) 357, 465, 514, 573
HindII GTYRAC 4 cut(s) 357, 465, 514, 573
HinfI GANTC 3 cut(s) 493, 544, 748
HpaI GTTAAC 1 cut(s) 573
HphI GGTGA 2 cut(s) 589, 782
Hpy166II GTNNAC 6 cut(s) 26, 357, 465, 514, 573, 637
Hpy188III TCNNGA 6 cut(s) 137, 176, 336, 481, 565, 778
Hpy8I GTNNAC 6 cut(s) 26, 357, 465, 514, 573, 637
HpyAV CCTTC 1 cut(s) 801
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4IV ACGT 2 cut(s) 189, 639
HpyCH4V TGCA 5 cut(s) 552, 617, 637, 759, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 765
HpyF3I CTNAG 2 cut(s) 68, 690
HpySE526I ACGT 2 cut(s) 189, 639
Hsp92II CATG 6 cut(s) 60, 127, 226, 236, 414, 520
HspAI GCGC 1 cut(s) 826
Ksp22I TGATCA 3 cut(s) 229, 721, 787
KspAI GTTAAC 1 cut(s) 573
Kzo9I GATC 6 cut(s) 229, 313, 721, 780, 787, 864
LpnPI CCDG 8 cut(s) 112, 142, 393, 518, 750, 754, 765, 769
LweI GCATC 2 cut(s) 169, 604
MaeI CTAG 3 cut(s) 137, 303, 765
MaeII ACGT 2 cut(s) 189, 639
MaeIII GTNAC 4 cut(s) 152, 587, 595, 857
MalI GATC 6 cut(s) 231, 315, 723, 782, 789, 866
MboI GATC 6 cut(s) 229, 313, 721, 780, 787, 864
MboII GAAGA 3 cut(s) 488, 502, 859
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 2 cut(s) 240, 639
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 725
MnlI CCTC 9 cut(s) 75, 468, 561, 567, 685, 688, 807, 816, 829
MseI TTAA 6 cut(s) 348, 437, 572, 654, 663, 819
Mva1269I GAATGC 1 cut(s) 679
MwoI GCNNNNNNNGC 1 cut(s) 765
NdeII GATC 6 cut(s) 229, 313, 721, 780, 787, 864
NlaIII CATG 6 cut(s) 60, 127, 226, 236, 414, 520
NlaIV GGNNCC 1 cut(s) 735
NmuCI GTSAC 3 cut(s) 152, 587, 595
NspV TTCGAA 1 cut(s) 805
PaeR7I CTCGAG 1 cut(s) 563
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 2 cut(s) 544, 748
PflFI GACNNNGTC 1 cut(s) 593
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 1 cut(s) 520
PsuI RGATCY 1 cut(s) 780
PsyI GACNNNGTC 1 cut(s) 593
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 6 cut(s) 348, 437, 572, 654, 663, 819
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 6 cut(s) 229, 313, 721, 780, 787, 864
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 1 cut(s) 502
SduI GDGCHC 2 cut(s) 240, 639
SfaNI GCATC 2 cut(s) 169, 604
Sfr274I CTCGAG 1 cut(s) 563
SfuI TTCGAA 1 cut(s) 805
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 4 cut(s) 563, 668, 679, 776
SmoI CTYRAG 4 cut(s) 563, 668, 679, 776
SsiI CCGC 1 cut(s) 65
SspMI CTAG 3 cut(s) 137, 303, 765
TaaI ACNGT 1 cut(s) 593
TaiI ACGT 2 cut(s) 192, 642
TaqI TCGA 4 cut(s) 175, 316, 564, 805
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 544, 748
Tru1I TTAA 6 cut(s) 348, 437, 572, 654, 663, 819
Tru9I TTAA 6 cut(s) 348, 437, 572, 654, 663, 819
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 3 cut(s) 152, 587, 595
Tsp45I GTSAC 3 cut(s) 152, 587, 595
TspDTI ATGAA 5 cut(s) 236, 302, 399, 416, 722
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 593
Van91I CCANNNNNTGG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 635
XapI RAATTY 3 cut(s) 140, 699, 852
XbaI TCTAGA 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 563
XspI CTAG 3 cut(s) 137, 303, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.