Rw6G004420

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000103
Physical Location & Seq
Reverse (-)
7041908 .. 7042733
826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004420.1

Sequence Viewer

Length: 603 bp
ATGAACATCCATAATGACCAAATAGGGGTTCCTGCCGGTTGGATTCCTGCTTGCAGTTCTAGCAATTTGCTCAAGATCTTTGATCACCTACCTCATATTCGAAGGCTTGAAATTAAGTGGCGCTTTTTAGAGTATTTGTCTCTGGGCTCTTTGCCAGAAAAGCTCAATAAACCATGTCAATATCTCAATGCTCTTTCTATAGACATATGCTTCGACGATCCCGATGCAATTCCAACTGCTCTATGCCTTCTGAGAAGCTCCCCTGCTCTACAAGAGCTAGAAATTGTGATGGATGGGATAAAGAAACTCGAAAGGATACAAACTGTTGTCGAAGAAGTGAAGTCTTCTTGTTTGGATGTGAGCTACAATTGCACACTTTCTCAACTGCGACTTGTGAAAATAACTGAGATCTCTGGTGTTAAAGCTGAACTAGATTTCATCAGATTTCTCCTTTTAAGTTCACCTCTTCTTGAGAGAATGACTATCATGCCTCCTCGATTTCCTGAGCCTGCTACTGTGGATGGTTTTCCAAAACTAGTAAAAGAGCTACTCCAGTTTAAACATGAATCAAAGCATGCGGAGATTATTCTCCTGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

200

Amino Acids

22.7

Weight (kDa)

5.76

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 124 - 162 3e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 578
AclWI GGATC 2 cut(s) 212, 590
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 110
AhlI ACTAGT 1 cut(s) 535
AjnI CCWGG 1 cut(s) 591
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 6 cut(s) 163, 258, 277, 363, 425, 547
AluI AGCT 6 cut(s) 163, 258, 277, 363, 425, 547
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 212, 590
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 77, 453
AsuII TTCGAA 1 cut(s) 100
BamHI GGATCC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 336
BccI CCATC 3 cut(s) 283, 287, 515
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 1 cut(s) 593
BciVI GTATCC 1 cut(s) 309
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 144
BcuI ACTAGT 1 cut(s) 535
BfaI CTAG 4 cut(s) 60, 278, 431, 536
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 124
BfuI GTATCC 1 cut(s) 309
BglII AGATCT 2 cut(s) 75, 408
Bme1390I CCNGG 1 cut(s) 593
BmiI GGNNCC 2 cut(s) 30, 597
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 2 cut(s) 56, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 553
BseBI CCWGG 1 cut(s) 593
BseGI GGATG 4 cut(s) 6, 298, 361, 526
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 242, 396, 495
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 483
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 5 cut(s) 75, 82, 217, 408, 595
BspACI CCGC 1 cut(s) 578
BspCNI CTCAG 3 cut(s) 243, 397, 496
BspLI GGNNCC 2 cut(s) 30, 597
BspPI GGATC 2 cut(s) 212, 590
BspT104I TTCGAA 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 35
BssMI GATC 5 cut(s) 75, 82, 217, 408, 595
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 2 cut(s) 325, 517
Bst6I CTCTTC 1 cut(s) 471
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 52, 510, 576
BstDEI CTNAG 3 cut(s) 251, 405, 504
BstF5I GGATG 4 cut(s) 6, 298, 361, 526
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 5 cut(s) 78, 85, 220, 411, 598
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 5 cut(s) 75, 82, 217, 408, 595
BstMWI GCNNNNNNNGC 3 cut(s) 60, 160, 369
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 3 cut(s) 75, 408, 595
BstYI RGATCY 3 cut(s) 75, 408, 595
BsuI GTATCC 1 cut(s) 309
BtsCI GGATG 4 cut(s) 6, 298, 361, 526
Cac8I GCNNGC 3 cut(s) 52, 510, 576
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 35
CviAII CATG 4 cut(s) 174, 487, 563, 575
CviJI RGCY 9 cut(s) 106, 147, 163, 258, 277, 363, 425, 508, 547
CviKI_1 RGCY 9 cut(s) 106, 147, 163, 258, 277, 363, 425, 508, 547
DdeI CTNAG 3 cut(s) 251, 405, 504
DpnI GATC 5 cut(s) 77, 84, 219, 410, 597
DpnII GATC 5 cut(s) 75, 82, 217, 408, 595
DraI TTTAAA 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 4 cut(s) 177, 490, 566, 578
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 4 cut(s) 173, 486, 562, 574
FauNDI CATATG 1 cut(s) 206
FbaI TGATCA 1 cut(s) 82
FokI GGATG 3 cut(s) 305, 368, 533
FriOI GRGCYC 1 cut(s) 149
FspBI CTAG 4 cut(s) 60, 278, 431, 536
GlaI GCGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 536
HaeII RGCGCY 1 cut(s) 124
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 123
Hin1II CATG 4 cut(s) 177, 490, 566, 578
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 2 cut(s) 43, 566
HpaII CCGG 1 cut(s) 36
HphI GGTGA 2 cut(s) 77, 453
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 252, 443
Hpy188III TCNNGA 4 cut(s) 73, 221, 470, 503
Hpy8I GTNNAC 1 cut(s) 461
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 96, 257
HpyCH4III ACNGT 2 cut(s) 325, 517
HpyCH4V TGCA 3 cut(s) 54, 227, 372
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 160, 369
HpyF3I CTNAG 3 cut(s) 251, 405, 504
Hsp92II CATG 4 cut(s) 177, 490, 566, 578
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 5 cut(s) 75, 82, 217, 408, 595
LmnI GCTCC 1 cut(s) 263
LweI GCATC 1 cut(s) 214
MaeI CTAG 4 cut(s) 60, 278, 431, 536
MalI GATC 5 cut(s) 77, 84, 219, 410, 597
MboI GATC 5 cut(s) 75, 82, 217, 408, 595
MboII GAAGA 3 cut(s) 336, 344, 458
MfeI CAATTG 1 cut(s) 367
MflI RGATCY 3 cut(s) 75, 408, 595
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 64, 111, 228, 282, 367
MmeI TCCRAC 2 cut(s) 20, 257
MnlI CCTC 4 cut(s) 102, 474, 501, 504
MseI TTAA 4 cut(s) 114, 420, 455, 558
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 593
MssI GTTTAAAC 1 cut(s) 559
MunI CAATTG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 3 cut(s) 60, 160, 369
NdeI CATATG 1 cut(s) 206
NdeII GATC 5 cut(s) 75, 82, 217, 408, 595
NlaIII CATG 4 cut(s) 177, 490, 566, 578
NlaIV GGNNCC 2 cut(s) 30, 597
NspI RCATGY 1 cut(s) 578
NspV TTCGAA 1 cut(s) 100
PaeI GCATGC 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 2 cut(s) 43, 566
PfoI TCCNGGA 1 cut(s) 591
PmeI GTTTAAAC 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 30, 597
PsuI RGATCY 3 cut(s) 75, 408, 595
SaqAI TTAA 4 cut(s) 114, 420, 455, 558
Sau3AI GATC 5 cut(s) 75, 82, 217, 408, 595
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 149
SetI ASST 9 cut(s) 90, 94, 165, 260, 279, 365, 427, 466, 549
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 71, 470
SmoI CTYRAG 2 cut(s) 71, 470
SpeI ACTAGT 1 cut(s) 535
SphI GCATGC 1 cut(s) 578
Sse9I AATT 5 cut(s) 64, 111, 228, 282, 367
SsiI CCGC 1 cut(s) 578
SspMI CTAG 4 cut(s) 60, 278, 431, 536
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 2 cut(s) 325, 517
TaqI TCGA 5 cut(s) 100, 213, 309, 330, 496
TasI AATT 5 cut(s) 64, 111, 228, 282, 367
TfiI GAWTC 2 cut(s) 43, 566
Tru1I TTAA 4 cut(s) 114, 420, 455, 558
Tru9I TTAA 4 cut(s) 114, 420, 455, 558
TspDTI ATGAA 3 cut(s) 17, 427, 579
XceI RCATGY 1 cut(s) 578
XspI CTAG 4 cut(s) 60, 278, 431, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.