Rmu_sc0000529.1_g000003

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000529.1
OG0000103
Physical Location & Seq
Reverse (-)
7123 .. 8447
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000529.1_g000003.1.cds

Sequence Viewer

Length: 840 bp
atggtagcagacatcttagcgaagcatagtttggacaacaaattaggagtttgcagaatggacacaaaccctccgtttatgaatcaagttttgatggatgatattgatggcctggtgaggcctaggatggttgtaacagcttcgaaagaaagtaaaacagtcaagttgtgttcgaatttgacggagttggatagaattagcaacttaccgaaggatcttgcagaaaagatattgtcacttttgccaattagggatgcagtgaggacgagtgttttatcaactaagtggaggtacaaatcagctatgctaccacatctggtgtttgatgctccgcaacaaacatttgcggctgttgttgatcatgtactcttaagtcacatcggccccttatacaagttcaagattgttaaaaaatatatatattttagagatatggatcggtggatacttcacaggtcaagaaactccatcaaacagttcacacttgaacaccagggaaactgctataaggtgccttcatctatgttttcatgtcaaggtttgactcatttagagttgcatagatgtttgctacaaccgccttccacattcacaggcttcaaaagtttgaaaagcctgacaattgttcgtgttagtctgacggacgatgtgcttgaaaatatgattgttcactgtcctctacttgagcggttgactgtggagttctgtgattatttcagccaactcaatatcaatgcaccaaatctccgatttctttactttattggagaagtggggtccttgcagatctacaaatttgctaaagttctttgcaagccttccccatattcagaggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

279

Amino Acids

31.97

Weight (kDa)

9.13

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 688
AciI CCGC 4 cut(s) 332, 347, 578, 688
AclWI GGATC 2 cut(s) 222, 444
AcsI RAATTY 2 cut(s) 175, 794
AfaI GTAC 2 cut(s) 293, 366
AflII CTTAAG 1 cut(s) 370
AgsI TTSAA 5 cut(s) 400, 488, 601, 610, 656
AjnI CCWGG 2 cut(s) 111, 492
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 140, 302
AluI AGCT 2 cut(s) 140, 302
AlwI GGATC 2 cut(s) 222, 444
AoxI GGCC 3 cut(s) 109, 119, 382
ApoI RAATTY 2 cut(s) 175, 794
AspA2I CCTAGG 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 383, 777
AsuHPI GGTGA 1 cut(s) 127
AsuII TTCGAA 2 cut(s) 143, 173
AvaII GGWCC 1 cut(s) 777
AvrII CCTAGG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 511
BccI CCATC 4 cut(s) 88, 101, 121, 476
BciT130I CCWGG 2 cut(s) 113, 494
BciVI GTATCC 1 cut(s) 438
BclI TGATCA 1 cut(s) 358
BfaI CTAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 370
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 786
BisI GCNGC 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 122
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 113, 494
Bme18I GGWCC 1 cut(s) 777
BmgT120I GGNCC 2 cut(s) 383, 777
BmiI GGNNCC 3 cut(s) 385, 513, 778
BmrFI CCNGG 2 cut(s) 113, 494
BmsI GCATC 2 cut(s) 244, 316
Bpu14I TTCGAA 2 cut(s) 143, 173
BpuEI CTTGAG 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 122, 493
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 729, 759
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 113, 494
BseDI CCNNGG 2 cut(s) 122, 493
BseGI GGATG 3 cut(s) 103, 132, 259
BseJI GATNNNNATC 1 cut(s) 435
BshFI GGCC 3 cut(s) 111, 121, 384
BshNI GGYRCC 1 cut(s) 511
BsnI GGCC 3 cut(s) 111, 121, 384
Bsp119I TTCGAA 2 cut(s) 143, 173
Bsp143I GATC 4 cut(s) 214, 358, 436, 786
BspACI CCGC 4 cut(s) 332, 347, 578, 688
BspANI GGCC 3 cut(s) 111, 121, 384
BspLI GGNNCC 3 cut(s) 385, 513, 778
BspPI GGATC 2 cut(s) 222, 444
BspT104I TTCGAA 2 cut(s) 143, 173
BspT107I GGYRCC 1 cut(s) 511
BspTI CTTAAG 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 688
BssECI CCNNGG 2 cut(s) 122, 493
BssMI GATC 4 cut(s) 214, 358, 436, 786
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 113, 494
Bst4CI ACNGT 4 cut(s) 160, 477, 674, 697
BstAFI CTTAAG 1 cut(s) 370
BstBI TTCGAA 2 cut(s) 143, 173
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 3 cut(s) 16, 282, 837
BstF5I GGATG 3 cut(s) 103, 132, 259
BstKTI GATC 4 cut(s) 217, 361, 439, 789
BstMBI GATC 4 cut(s) 214, 358, 436, 786
BstMWI GCNNNNNNNGC 1 cut(s) 577
BstNI CCWGG 2 cut(s) 113, 494
BstSCI CCNGG 2 cut(s) 111, 492
BstX2I RGATCY 2 cut(s) 214, 786
BstYI RGATCY 2 cut(s) 214, 786
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 3 cut(s) 111, 121, 384
BtsCI GGATG 3 cut(s) 103, 132, 259
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 264, 670
Cac8I GCNNGC 1 cut(s) 815
Cfr13I GGNCC 2 cut(s) 383, 777
Csp6I GTAC 2 cut(s) 292, 365
CviAII CATG 2 cut(s) 362, 531
CviQI GTAC 2 cut(s) 292, 365
DdeI CTNAG 3 cut(s) 16, 282, 837
DpnI GATC 4 cut(s) 216, 360, 438, 788
DpnII GATC 4 cut(s) 214, 358, 436, 786
Eco130I CCWWGG 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 111, 492
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 365, 534
FatI CATG 2 cut(s) 361, 530
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 3 cut(s) 110, 139, 266
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 348
HaeIII GGCC 3 cut(s) 111, 121, 384
Hin1II CATG 2 cut(s) 365, 534
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HinfI GANTC 2 cut(s) 82, 544
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 480, 670, 693
Hpy188I TCNGA 3 cut(s) 639, 749, 832
Hpy188III TCNNGA 2 cut(s) 400, 459
Hpy8I GTNNAC 3 cut(s) 480, 670, 693
HpyAV CCTTC 4 cut(s) 205, 525, 591, 828
HpyCH4III ACNGT 4 cut(s) 160, 477, 674, 697
HpyCH4V TGCA 7 cut(s) 54, 221, 257, 559, 737, 784, 813
HpyF10VI GCNNNNNNNGC 1 cut(s) 577
HpyF3I CTNAG 3 cut(s) 16, 282, 837
Hsp92II CATG 2 cut(s) 365, 534
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 4 cut(s) 214, 358, 436, 786
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 8 cut(s) 98, 125, 302, 439, 479, 506, 579, 629
LweI GCATC 2 cut(s) 244, 316
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 3 cut(s) 133, 234, 374
MalI GATC 4 cut(s) 216, 360, 438, 788
MbiI CCGCTC 1 cut(s) 688
MboI GATC 4 cut(s) 214, 358, 436, 786
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 2 cut(s) 214, 786
MluCI AATT 6 cut(s) 41, 175, 195, 246, 621, 794
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 6 cut(s) 81, 111, 255, 282, 687, 826
MseI TTAA 2 cut(s) 371, 408
MspCI CTTAAG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 113, 494
MunI CAATTG 1 cut(s) 621
MvaI CCWGG 2 cut(s) 113, 494
MwoI GCNNNNNNNGC 1 cut(s) 577
NdeII GATC 4 cut(s) 214, 358, 436, 786
NlaIII CATG 2 cut(s) 365, 534
NlaIV GGNNCC 3 cut(s) 385, 513, 778
NmuCI GTSAC 2 cut(s) 234, 374
NspV TTCGAA 2 cut(s) 143, 173
PceI AGGCCT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PpuMI RGGWCCY 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 777
Psp6I CCWGG 2 cut(s) 111, 492
PspGI CCWGG 2 cut(s) 111, 492
PspN4I GGNNCC 3 cut(s) 385, 513, 778
PspPI GGNCC 2 cut(s) 383, 777
PspPPI RGGWCCY 1 cut(s) 777
PsuI RGATCY 2 cut(s) 214, 786
RsaI GTAC 2 cut(s) 293, 366
RsaNI GTAC 2 cut(s) 292, 365
SaqAI TTAA 2 cut(s) 371, 408
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 4 cut(s) 214, 358, 436, 786
Sau96I GGNCC 2 cut(s) 383, 777
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 2 cut(s) 113, 494
SetI ASST 6 cut(s) 142, 293, 304, 458, 513, 541
SfaNI GCATC 2 cut(s) 244, 316
SfuI TTCGAA 2 cut(s) 143, 173
SinI GGWCC 1 cut(s) 777
SmlI CTYRAG 2 cut(s) 370, 683
SmoI CTYRAG 2 cut(s) 370, 683
Sse9I AATT 6 cut(s) 41, 175, 195, 246, 621, 794
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 4 cut(s) 332, 347, 578, 688
SspMI CTAG 1 cut(s) 123
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 111, 492
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 4 cut(s) 160, 477, 674, 697
TaqI TCGA 2 cut(s) 143, 173
TasI AATT 6 cut(s) 41, 175, 195, 246, 621, 794
TatI WGTACW 1 cut(s) 364
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 371, 408
Tru9I TTAA 2 cut(s) 371, 408
TscAI CASTG 2 cut(s) 264, 677
TseFI GTSAC 2 cut(s) 234, 374
Tsp45I GTSAC 2 cut(s) 234, 374
TspDTI ATGAA 3 cut(s) 95, 507, 519
TspGWI ACGGA 3 cut(s) 63, 197, 656
TspRI CASTG 2 cut(s) 264, 677
Vha464I CTTAAG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 777
XapI RAATTY 2 cut(s) 175, 794
XmaJI CCTAGG 1 cut(s) 122
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.