Rh6AG051500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000103
Physical Location & Seq
Forward (+)
7408699 .. 7409933
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG051500.1

Sequence Viewer

Length: 846 bp
ATGCAAAGAGAACCACCAAGGTACCGCTTGAAAATGGATATTGAGTTTGACAATCTCAGTGACTTACCAAGTGATGTTACGGAAAAGATTTTGTCATTTTTGCCAATGAAAGAGGCAGTGAGGACAAGTATATTATCAAGCAAGTGGAGGTACAAATGGGCTATGCTTCCAGATCTTGTGTTTGATGAACTGGGTTTCCCAGGAGTACTTTATAAGCATGACAAATTAGTGAAAATGGTTGATCATGTGCTCTTCCTTAACATTGGTCCAATAAACAAGGTCAAGCTTTCTCATAAAGATGCCTTCATGTTTGTTTTCCTGTCAAGATTTGGTTCATTTGGAATTGTGCAATTGTTTGCTAAAACCTCCGCGCACATTCAAACTGCTTATATTCTTGGTTACTTTTTAAAGTATTTAGCTGTTGGTGACTTACCGGTGAAGCGTCCTAAACCATGTCTGCATCTGAAGTTGCTTCGTATAAACTTAGAATTCAATGATCTGAAGGAGGTTTTATCTACTTTATACCTTCTGAGAAGCGCCCCTTTTCTACGAAAACTATATATCACGGTTCGTCAAGAGGGACAGGCTCTTGTGGGAGAGGTGAACTCTTGGTTAGATGACAACCTGAATTTGCAACTCAGAAAACTGCAAATTGTGGAAGTACATGGCATCAGTAGCACCAAAGCTGGACTAGATTTCATCAAATTTCTACTTTTAAATTCACCAATGCTTGAGAAGGTGTTTTGCAAGCCTGCATCTCACTATAGTTCACCTGAACTATTAAAAAAGATGATCCAGTTTAAGCGTTCCTCATCCCTTGCGGAGATAATCTACTTGGACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

281

Amino Acids

32.47

Weight (kDa)

9.49

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 4.2e-08 F-box domain
FBD PF08387 215 - 247 1e-05 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccII CGCG 1 cut(s) 371
AciI CCGC 3 cut(s) 25, 369, 821
AclWI GGATC 1 cut(s) 787
AcsI RAATTY 4 cut(s) 488, 628, 704, 718
AcuI CTGAAG 2 cut(s) 485, 521
AfaI GTAC 4 cut(s) 23, 152, 207, 663
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 3 cut(s) 31, 380, 493
AjnI CCWGG 1 cut(s) 199
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 3 cut(s) 286, 419, 686
AluI AGCT 3 cut(s) 286, 419, 686
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 1 cut(s) 787
ApoI RAATTY 4 cut(s) 488, 628, 704, 718
AsiGI ACCGGT 1 cut(s) 433
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 2 cut(s) 373, 539
AspS9I GGNCC 2 cut(s) 266, 838
AsuHPI GGTGA 5 cut(s) 437, 448, 613, 714, 762
AvaII GGWCC 2 cut(s) 266, 838
BaeI ACNNNNGTAYC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 241
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 1 cut(s) 763
BfoI RGCGCY 1 cut(s) 540
BglII AGATCT 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 2 cut(s) 266, 838
BmgT120I GGNCC 2 cut(s) 266, 838
BmiI GGNNCC 2 cut(s) 23, 840
BmrFI CCNGG 1 cut(s) 201
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 4 cut(s) 289, 469, 678, 764
BmuI ACTGGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpuEI CTTGAG 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 17, 199
BsaWI WCCGGW 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 195, 796
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 17, 199
BseGI GGATG 1 cut(s) 812
BseMII CTCAG 3 cut(s) 70, 521, 652
BseNI ACTGG 2 cut(s) 195, 796
Bsh1236I CGCG 1 cut(s) 371
BshNI GGYRCC 1 cut(s) 21
BshTI ACCGGT 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 172, 241, 496, 792
BspACI CCGC 3 cut(s) 25, 369, 821
BspCNI CTCAG 3 cut(s) 69, 522, 651
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 23, 840
BspPI GGATC 1 cut(s) 787
BspQI GCTCTTC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 2 cut(s) 195, 796
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 17, 199
BssMI GATC 4 cut(s) 172, 241, 496, 792
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 749, 753
BstDEI CTNAG 4 cut(s) 56, 484, 530, 638
BstF5I GGATG 1 cut(s) 812
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 373, 539
BstKTI GATC 4 cut(s) 175, 244, 499, 795
BstMBI GATC 4 cut(s) 172, 241, 496, 792
BstMWI GCNNNNNNNGC 1 cut(s) 675
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 763
BstUI CGCG 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtsCI GGATG 1 cut(s) 812
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 64, 123
Cac8I GCNNGC 2 cut(s) 749, 753
CfoI GCGC 2 cut(s) 373, 539
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 266, 838
CseI GACGC 1 cut(s) 431
Csp6I GTAC 4 cut(s) 22, 151, 206, 662
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 6 cut(s) 218, 245, 307, 453, 665, 843
CviJI RGCY 6 cut(s) 161, 286, 419, 587, 686, 751
CviKI_1 RGCY 6 cut(s) 161, 286, 419, 587, 686, 751
CviQI GTAC 4 cut(s) 22, 151, 206, 662
DdeI CTNAG 4 cut(s) 56, 484, 530, 638
DpnI GATC 4 cut(s) 174, 243, 498, 794
DpnII GATC 4 cut(s) 172, 241, 496, 792
DraI TTTAAA 2 cut(s) 408, 717
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 2 cut(s) 266, 838
Eco57I CTGAAG 2 cut(s) 485, 521
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 6 cut(s) 221, 248, 310, 456, 668, 846
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FaqI GGGAC 1 cut(s) 594
FatI CATG 6 cut(s) 217, 244, 306, 452, 664, 842
FbaI TGATCA 1 cut(s) 241
FokI GGATG 1 cut(s) 799
FspBI CTAG 1 cut(s) 692
GlaI GCGC 2 cut(s) 372, 538
HaeII RGCGCY 1 cut(s) 540
HapII CCGG 1 cut(s) 434
HgaI GACGC 1 cut(s) 431
HhaI GCGC 2 cut(s) 373, 539
Hin1II CATG 6 cut(s) 221, 248, 310, 456, 668, 846
Hin6I GCGC 2 cut(s) 371, 537
HinP1I GCGC 2 cut(s) 371, 537
HindIII AAGCTT 1 cut(s) 284
HpaII CCGG 1 cut(s) 434
HphI GGTGA 5 cut(s) 437, 448, 613, 714, 762
Hpy166II GTNNAC 2 cut(s) 604, 770
Hpy188I TCNGA 4 cut(s) 465, 501, 531, 641
Hpy188III TCNNGA 3 cut(s) 170, 324, 575
Hpy8I GTNNAC 2 cut(s) 604, 770
HpyAV CCTTC 4 cut(s) 313, 496, 536, 730
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4V TGCA 7 cut(s) 4, 349, 460, 634, 649, 747, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 675
HpyF3I CTNAG 4 cut(s) 56, 484, 530, 638
Hsp92II CATG 6 cut(s) 221, 248, 310, 456, 668, 846
HspAI GCGC 2 cut(s) 371, 537
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 172, 241, 496, 792
LguI GCTCTTC 1 cut(s) 257
LweI GCATC 4 cut(s) 289, 469, 678, 764
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 4 cut(s) 59, 76, 398, 425
MalI GATC 4 cut(s) 174, 243, 498, 794
MboI GATC 4 cut(s) 172, 241, 496, 792
MboII GAAGA 1 cut(s) 244
MfeI CAATTG 1 cut(s) 350
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 8 cut(s) 224, 342, 350, 488, 628, 651, 704, 718
MnlI CCTC 8 cut(s) 106, 114, 141, 376, 499, 571, 592, 820
MseI TTAA 5 cut(s) 258, 407, 716, 782, 801
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 675
NdeII GATC 4 cut(s) 172, 241, 496, 792
NlaIII CATG 6 cut(s) 221, 248, 310, 456, 668, 846
NlaIV GGNNCC 2 cut(s) 23, 840
NmuCI GTSAC 2 cut(s) 59, 425
PciSI GCTCTTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 433
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 23, 840
PspPI GGNCC 2 cut(s) 266, 838
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 4 cut(s) 23, 152, 207, 663
RsaNI GTAC 4 cut(s) 22, 151, 206, 662
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 5 cut(s) 258, 407, 716, 782, 801
Sau3AI GATC 4 cut(s) 172, 241, 496, 792
Sau96I GGNCC 2 cut(s) 266, 838
ScaI AGTACT 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 4 cut(s) 289, 469, 678, 764
SfcI CTRYAG 1 cut(s) 763
SinI GGWCC 2 cut(s) 266, 838
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 8 cut(s) 224, 342, 350, 488, 628, 651, 704, 718
SsiI CCGC 3 cut(s) 25, 369, 821
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 568
TasI AATT 8 cut(s) 224, 342, 350, 488, 628, 651, 704, 718
TatI WGTACW 2 cut(s) 205, 661
Tru1I TTAA 5 cut(s) 258, 407, 716, 782, 801
Tru9I TTAA 5 cut(s) 258, 407, 716, 782, 801
TscAI CASTG 2 cut(s) 64, 123
TseFI GTSAC 2 cut(s) 59, 425
Tsp45I GTSAC 2 cut(s) 59, 425
TspDTI ATGAA 5 cut(s) 122, 201, 295, 324, 688
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 64, 123
VpaK11BI GGWCC 2 cut(s) 266, 838
XapI RAATTY 4 cut(s) 488, 628, 704, 718
XspI CTAG 1 cut(s) 692
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.