Rh6AG051100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000103
Physical Location & Seq
Reverse (-)
7348742 .. 7350543
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG051100.1

Sequence Viewer

Length: 1263 bp
ATGGAGCAAACAGAACCACCCAAGTCCCGTTCGAAAGTGGAGATGGAGTTGGACAGAATCAGCAACTTACCTAGTGATGTTATAGTTAAAATTCTGTCATGTTTGACTCTTAAGGAGGCAGTGAGGACAAGTGTTTTTTCGAGCAGGTGGAAGAACAAATGGGCTATGCTTTCATGTCTTGTATTTGATGAGAAGTGTTTCTCAACTGAAAACTGTGCAACCTTTGTGAACATTGTTTATCATGTACTCTTAAGTTGCATTGTCCCCATAGAGAAGTTTGTGCTTTCTCACACTCATCGTATACCTACTAGAGATATTGATCGATGGGTTCTTCATCTATCAAGAAACTCTATTACAGTTTTCGAACTTCGTATTCCTTATGCGCCTAAATACAAGATGCCTGTATGTTTCTTTTCTTATCAAGATATGATTGAGCTGAAGTTATATAACTGCTTGCTGACACCTCCAACCACATTTAAAGGCTTCAGAACTTTGAAGAGAGTTATTTTTCAGTATGTTACTTTGGCCCAAGATGTGTTGGAAAATCTGATTATTCCTCTGCTAGAGAGTTTGGAAGTGATAAACTGTGATGGCATTACCCATCTCAAGATTGATGCACCAAATCTTCGATTCCTTTCTTTTGTTGGTGGCTTGGAAGATGTTAGTCTTCAGAATACCTTAAATCTTGCTGTTGTTCAATTTTGTTTGACGGAACTTTATGATGGACAAGATTGTGTCAGTTCTTCCAATTTGGCAAAATTTTTCATTGACCTGCCTCACATTCAGTGGCTCAAAATTGATGGTTTTGCTGTACAGTATTTGGCTGTTGGTGACTTGCCTGGAAGGCTCCCCAAACCATGTCTAGAACTAAATTTTCTTTCTCTCCTCGTATACTTTAATGATCTTGCGGAAATTTTAACTACTCTGTATCTTCTAAGAAGCTCCCCTGTTCTGGAAGTAGTACATGTTACGGTCCACCATGAAGAACAGGTCATTGCTGTTGATGAAGAGGCAAACTCTTGGTTGGATAACCTAGATGATGACAGAACTTGCTCATTCCCCAAACTGCGACTTGTTCAATTAACCGACTTTTCTGGTTGCAAAGCTGAACTAGATTTCATCAAATTTTTGCTTCTAAATTCACCCGTGCTTGAGACGATGACTATTAGGGCTTTTTCTGCCGATGGTTCTTCAGAAGTTTTAAAGAAGTTGCTCCAGTTAAGGCGTACCTCAAGTGCAGAGATTATATACTTGGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

420

Amino Acids

48.01

Weight (kDa)

5.47

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 58 8.4e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 99 - 206 4.5e-09 At1g61320/AtMIF1, LRR domain
LRR_At1g61320_AtMIF1 PF23622 188 - 394 1.2e-08 At1g61320/AtMIF1, LRR domain
FBD PF08387 356 - 389 3.1e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 135
Acc36I ACCTGC 2 cut(s) 135, 780
AccI GTMKAC 2 cut(s) 301, 891
AciI CCGC 1 cut(s) 908
AcsI RAATTY 6 cut(s) 90, 758, 871, 912, 1124, 1138
AcuI CTGAAG 4 cut(s) 458, 469, 653, 1176
AfaI GTAC 4 cut(s) 246, 813, 963, 1228
AfiI CCNNNNNNNGG 1 cut(s) 952
AflII CTTAAG 2 cut(s) 110, 250
AflIII ACRYGT 1 cut(s) 964
AgsI TTSAA 3 cut(s) 496, 698, 1079
AjnI CCWGG 1 cut(s) 838
AluBI AGCT 3 cut(s) 436, 942, 1106
AluI AGCT 3 cut(s) 436, 942, 1106
Alw26I GTCTC 1 cut(s) 1148
AoxI GGCC 1 cut(s) 525
ApoI RAATTY 6 cut(s) 90, 758, 871, 912, 1124, 1138
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 526, 973
AsuHPI GGTGA 2 cut(s) 842, 1134
AsuII TTCGAA 2 cut(s) 32, 363
AvaII GGWCC 1 cut(s) 973
BbsI GAAGAC 1 cut(s) 659
BccI CCATC 7 cut(s) 37, 318, 584, 609, 716, 794, 1178
BciT130I CCWGG 1 cut(s) 840
BcoDI GTCTC 1 cut(s) 1148
BfaI CTAG 6 cut(s) 72, 309, 563, 863, 1034, 1112
BfrI CTTAAG 2 cut(s) 110, 250
BfuAI ACCTGC 2 cut(s) 135, 780
BglI GCCNNNNNGGC 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 840
Bme18I GGWCC 1 cut(s) 973
BmgT120I GGNCC 2 cut(s) 526, 973
BmiI GGNNCC 1 cut(s) 848
BmrFI CCNGG 1 cut(s) 840
BmsI GCATC 2 cut(s) 387, 604
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
BpmI CTGGAG 1 cut(s) 1199
Bpu14I TTCGAA 2 cut(s) 32, 363
BpuEI CTTGAG 3 cut(s) 590, 1172, 1216
Bsa29I ATCGAT 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 952
Bse1I ACTGG 1 cut(s) 1216
Bse3DI GCAATG 1 cut(s) 993
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 840
BseCI ATCGAT 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 952
BseMI GCAATG 1 cut(s) 993
BseNI ACTGG 1 cut(s) 1216
BseRI GAGGAG 1 cut(s) 875
BsgI GTGCAG 1 cut(s) 1257
BshFI GGCC 1 cut(s) 527
BshVI ATCGAT 1 cut(s) 322
BslFI GGGAC 2 cut(s) 10, 248
BslI CCNNNNNNNGG 1 cut(s) 952
BsmAI GTCTC 1 cut(s) 1148
BsmBI CGTCTC 1 cut(s) 1148
BsmFI GGGAC 2 cut(s) 10, 248
BsnI GGCC 1 cut(s) 527
Bsp119I TTCGAA 2 cut(s) 32, 363
Bsp1407I TGTACA 1 cut(s) 811
Bsp143I GATC 2 cut(s) 319, 901
BspACI CCGC 1 cut(s) 908
BspANI GGCC 1 cut(s) 527
BspDI ATCGAT 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 848
BspMI ACCTGC 2 cut(s) 135, 780
BspT104I TTCGAA 2 cut(s) 32, 363
BspTI CTTAAG 2 cut(s) 110, 250
BsrDI GCAATG 1 cut(s) 993
BsrGI TGTACA 1 cut(s) 811
BsrI ACTGG 1 cut(s) 1216
BssMI GATC 2 cut(s) 319, 901
BssNAI GTATAC 2 cut(s) 302, 892
Bst1107I GTATAC 2 cut(s) 302, 892
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 5 cut(s) 215, 358, 587, 816, 973
Bst6I CTCTTC 2 cut(s) 491, 1002
BstAFI CTTAAG 2 cut(s) 110, 250
BstAUI TGTACA 1 cut(s) 811
BstBI TTCGAA 2 cut(s) 32, 363
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 935
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 322, 904
BstMAI GTCTC 1 cut(s) 1148
BstMBI GATC 2 cut(s) 319, 901
BstMWI GCNNNNNNNGC 2 cut(s) 844, 1178
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 1 cut(s) 968
BstSCI CCNGG 1 cut(s) 838
BstV2I GAAGAC 1 cut(s) 659
BstZ17I GTATAC 2 cut(s) 302, 892
Bsu15I ATCGAT 1 cut(s) 322
BsuRI GGCC 1 cut(s) 527
BsuTUI ATCGAT 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 791
BveI ACCTGC 2 cut(s) 135, 780
Cac8I GCNNGC 1 cut(s) 455
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 526, 973
ClaI ATCGAT 1 cut(s) 322
Csp6I GTAC 4 cut(s) 245, 812, 962, 1227
CviAII CATG 6 cut(s) 99, 174, 242, 858, 965, 980
CviQI GTAC 4 cut(s) 245, 812, 962, 1227
DdeI CTNAG 1 cut(s) 935
DpnI GATC 2 cut(s) 321, 903
DpnII GATC 2 cut(s) 319, 901
DraI TTTAAA 2 cut(s) 478, 1203
Eam1104I CTCTTC 2 cut(s) 491, 1002
EarI CTCTTC 2 cut(s) 491, 1002
Eco47I GGWCC 1 cut(s) 973
Eco57I CTGAAG 4 cut(s) 458, 469, 653, 1176
EcoRII CCWGG 1 cut(s) 838
Esp3I CGTCTC 1 cut(s) 1148
FaeI CATG 6 cut(s) 102, 177, 245, 861, 968, 983
FaqI GGGAC 2 cut(s) 10, 248
FatI CATG 6 cut(s) 98, 173, 241, 857, 964, 979
FblI GTMKAC 2 cut(s) 301, 891
FspBI CTAG 6 cut(s) 72, 309, 563, 863, 1034, 1112
GlaI GCGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 1199
HaeIII GGCC 1 cut(s) 527
HhaI GCGC 1 cut(s) 385
Hin1II CATG 6 cut(s) 102, 177, 245, 861, 968, 983
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 4 cut(s) 57, 106, 630, 1256
HphI GGTGA 2 cut(s) 842, 1134
Hpy166II GTNNAC 4 cut(s) 229, 302, 892, 976
Hpy188I TCNGA 4 cut(s) 488, 549, 672, 1195
Hpy188III TCNNGA 6 cut(s) 342, 422, 607, 863, 953, 1260
Hpy8I GTNNAC 4 cut(s) 229, 302, 892, 976
HpyAV CCTTC 1 cut(s) 837
HpyCH4III ACNGT 5 cut(s) 215, 358, 587, 816, 973
HpyCH4V TGCA 5 cut(s) 218, 258, 617, 1101, 1238
HpyF10VI GCNNNNNNNGC 2 cut(s) 844, 1178
HpyF3I CTNAG 1 cut(s) 935
Hsp92II CATG 6 cut(s) 102, 177, 245, 861, 968, 983
HspAI GCGC 1 cut(s) 383
Kzo9I GATC 2 cut(s) 319, 901
LmnI GCTCC 4 cut(s) 4, 852, 947, 1218
LweI GCATC 2 cut(s) 387, 604
MaeI CTAG 6 cut(s) 72, 309, 563, 863, 1034, 1112
MaeIII GTNAC 3 cut(s) 517, 830, 967
MalI GATC 2 cut(s) 321, 903
MboI GATC 2 cut(s) 319, 901
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 4 cut(s) 30, 491, 519, 1005
MnlI CCTC 8 cut(s) 109, 117, 474, 567, 786, 896, 1003, 1240
MroXI GAANNNNTTC 1 cut(s) 197
MspCI CTTAAG 2 cut(s) 110, 250
MspR9I CCNGG 1 cut(s) 840
MvaI CCWGG 1 cut(s) 840
MwoI GCNNNNNNNGC 2 cut(s) 844, 1178
NdeII GATC 2 cut(s) 319, 901
NlaIII CATG 6 cut(s) 102, 177, 245, 861, 968, 983
NlaIV GGNNCC 1 cut(s) 848
NmuCI GTSAC 1 cut(s) 830
NspI RCATGY 1 cut(s) 968
NspV TTCGAA 2 cut(s) 32, 363
PaqCI CACCTGC 1 cut(s) 135
PciI ACATGT 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 57, 630, 1256
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 1 cut(s) 964
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 1 cut(s) 848
PspPI GGNCC 2 cut(s) 526, 973
RsaI GTAC 4 cut(s) 246, 813, 963, 1228
RsaNI GTAC 4 cut(s) 245, 812, 962, 1227
Sau3AI GATC 2 cut(s) 319, 901
Sau96I GGNCC 2 cut(s) 526, 973
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 840
SfaNI GCATC 2 cut(s) 387, 604
SfuI TTCGAA 2 cut(s) 32, 363
SinI GGWCC 1 cut(s) 973
SmlI CTYRAG 5 cut(s) 110, 250, 605, 1151, 1231
SmoI CTYRAG 5 cut(s) 110, 250, 605, 1151, 1231
SsiI CCGC 1 cut(s) 908
SspMI CTAG 6 cut(s) 72, 309, 563, 863, 1034, 1112
StyD4I CCNGG 1 cut(s) 838
TaaI ACNGT 5 cut(s) 215, 358, 587, 816, 973
TaqI TCGA 5 cut(s) 32, 140, 322, 363, 628
TatI WGTACW 3 cut(s) 244, 811, 961
TfiI GAWTC 3 cut(s) 57, 630, 1256
TscAI CASTG 2 cut(s) 126, 791
TseFI GTSAC 1 cut(s) 830
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 6 cut(s) 162, 323, 754, 996, 1020, 1108
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 2 cut(s) 126, 791
Vha464I CTTAAG 2 cut(s) 110, 250
VpaK11BI GGWCC 1 cut(s) 973
XapI RAATTY 6 cut(s) 90, 758, 871, 912, 1124, 1138
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 301, 891
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 6 cut(s) 72, 309, 563, 863, 1034, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.