Rh6AG050300

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
7241181 .. 7243990
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG050300.1

Sequence Viewer

Length: 822 bp
ATGGAGTTGGACAGAATTAGCAGTTTACCAAATGATGTCACAGAAAAGATTTTGTCACGTTTGCCACTTAGGGAAGCAGTGAGGACAAGTGTTTTATCCAGCAAGTGGAGGTACAAATCGGCCATGCTTCAAGATCTAAAATTTAATGAATATGACTGGAGGGAAAGCCAAAATCGGGAGGTCGATGATTATGATGATCAAATCCAAACAACCTTTGTGAACATGGTTGATCACGTACTCTTACTTCATATTGGCCCCATTCGCAAGTTCGCTCTGTTTGCTGATGAGGTAGCCACTAGAGATCTTGATCGATGGCTTACTCATCTATCAAGAAACTCGATCAAAGAGTTGTATCTGTCTCTTGGTGCCTTGCCCGTAAAGCTTCCTAAATCATGTGAATATCTGAATGTTCTTTCTATAGAAATATGCTTCGATGATCCGGATGCAATTTTAACTGCTCTATGCATTCTGAGAAGCTCCCCTGCTCTACAGGAATTAGAAATTCTTATGGATGGCAGAAAGAAACTCACAAGGAGACCCTGGGTTGTCGAAGAACAGAAATGTTCTTGTTTAGATGTGAGCTACAATTGCACACTTTCTCAACTGCGACTTGTGAAAATAACTGACGTCTCCGGTGTTAAAGCTGAACTAGATTTCATCAGATTTCTACTTTTAAGTTCACCTCTGCTTGAGAGAATGACTATCACACCTCCTCAATTTCCTAAGCCTGCTTCTGTGGATGGTTTTCCGAAACTAGTAAAAGAGCTACTCCAGTTTAAACGTGAATCAAAGCATGCAGAGATTATTCTCCTGGACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

273

Amino Acids

31.52

Weight (kDa)

5.91

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 39 1.3e-07 F-box domain
FBD PF08387 197 - 235 1.2e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 439
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 140, 501
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 2 cut(s) 113, 237
AfiI CCNNNNNNNGG 2 cut(s) 105, 175
AgsI TTSAA 1 cut(s) 131
AhlI ACTAGT 1 cut(s) 754
AjnI CCWGG 2 cut(s) 539, 810
AluBI AGCT 5 cut(s) 382, 477, 582, 644, 766
AluI AGCT 5 cut(s) 382, 477, 582, 644, 766
Alw26I GTCTC 3 cut(s) 363, 529, 634
AlwI GGATC 1 cut(s) 431
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 2 cut(s) 120, 253
ApoI RAATTY 2 cut(s) 140, 501
AspS9I GGNCC 2 cut(s) 254, 814
AsuHPI GGTGA 1 cut(s) 672
AvaII GGWCC 1 cut(s) 814
BanI GGYRCC 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BccI CCATC 3 cut(s) 306, 506, 734
BciT130I CCWGG 2 cut(s) 541, 812
BclI TGATCA 2 cut(s) 196, 229
BcoDI GTCTC 3 cut(s) 363, 529, 634
BcuI ACTAGT 1 cut(s) 754
BfaI CTAG 3 cut(s) 297, 650, 755
BfmI CTRYAG 2 cut(s) 417, 488
BglII AGATCT 2 cut(s) 133, 301
Bme1390I CCNGG 2 cut(s) 541, 812
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 254, 814
BmiI GGNNCC 3 cut(s) 256, 367, 816
BmrFI CCNGG 2 cut(s) 541, 812
BmsI GCATC 1 cut(s) 433
BpmI CTGGAG 2 cut(s) 178, 755
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 710
Bsa29I ATCGAT 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 539, 540
BsaWI WCCGGW 2 cut(s) 439, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 175
Bse1I ACTGG 2 cut(s) 161, 772
Bse8I GATNNNNATC 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 2 cut(s) 541, 812
BseCI ATCGAT 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 539, 540
BseGI GGATG 3 cut(s) 448, 517, 745
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 105, 175
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 2 cut(s) 161, 772
BseRI GAGGAG 1 cut(s) 702
BshFI GGCC 2 cut(s) 122, 255
BshNI GGYRCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 310
BsiSI CCGG 2 cut(s) 440, 633
BslI CCNNNNNNNGG 2 cut(s) 105, 175
BsmAI GTCTC 3 cut(s) 363, 529, 634
BsmBI CGTCTC 1 cut(s) 634
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 2 cut(s) 122, 255
Bso31I GGTCTC 1 cut(s) 529
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
BspANI GGCC 2 cut(s) 122, 255
BspCNI CTCAG 1 cut(s) 462
BspDI ATCGAT 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 256, 367, 816
BspPI GGATC 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 529
BsrI ACTGG 2 cut(s) 161, 772
BssECI CCNNGG 2 cut(s) 539, 540
BssMI GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
BssNI GRCGYC 1 cut(s) 627
Bst2UI CCWGG 2 cut(s) 541, 812
BstACI GRCGYC 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 729, 795
BstDEI CTNAG 3 cut(s) 68, 470, 723
BstF5I GGATG 3 cut(s) 448, 517, 745
BstKTI GATC 7 cut(s) 136, 199, 232, 304, 310, 342, 439
BstMAI GTCTC 3 cut(s) 363, 529, 634
BstMBI GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
BstMWI GCNNNNNNNGC 4 cut(s) 261, 278, 379, 588
BstNI CCWGG 2 cut(s) 541, 812
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 539, 810
BstSFI CTRYAG 2 cut(s) 417, 488
BstX2I RGATCY 2 cut(s) 133, 301
BstYI RGATCY 2 cut(s) 133, 301
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 2 cut(s) 122, 255
BsuTUI ATCGAT 1 cut(s) 310
BtsCI GGATG 3 cut(s) 448, 517, 745
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 729, 795
Cfr13I GGNCC 2 cut(s) 254, 814
ClaI ATCGAT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 112, 236
CviAII CATG 4 cut(s) 124, 223, 393, 794
CviQI GTAC 2 cut(s) 112, 236
DdeI CTNAG 3 cut(s) 68, 470, 723
DpnI GATC 7 cut(s) 135, 198, 231, 303, 309, 341, 438
DpnII GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 539, 810
EcoT22I ATGCAT 1 cut(s) 467
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 4 cut(s) 127, 226, 396, 797
FatI CATG 4 cut(s) 123, 222, 392, 793
FbaI TGATCA 2 cut(s) 196, 229
FokI GGATG 3 cut(s) 455, 524, 752
FspBI CTAG 3 cut(s) 297, 650, 755
GsuI CTGGAG 2 cut(s) 178, 755
HaeIII GGCC 2 cut(s) 122, 255
HapII CCGG 2 cut(s) 440, 633
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 4 cut(s) 127, 226, 396, 797
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 785
HpaII CCGG 2 cut(s) 440, 633
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 3 cut(s) 26, 220, 680
Hpy188I TCNGA 4 cut(s) 405, 471, 662, 750
Hpy188III TCNNGA 5 cut(s) 131, 176, 305, 330, 440
Hpy8I GTNNAC 3 cut(s) 26, 220, 680
HpyCH4IV ACGT 4 cut(s) 58, 234, 627, 781
HpyCH4V TGCA 4 cut(s) 446, 465, 591, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 261, 278, 379, 588
HpyF3I CTNAG 3 cut(s) 68, 470, 723
HpySE526I ACGT 4 cut(s) 58, 234, 627, 781
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 4 cut(s) 127, 226, 396, 797
Kpn2I TCCGGA 1 cut(s) 439
Ksp22I TGATCA 2 cut(s) 196, 229
Kzo9I GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
LmnI GCTCC 1 cut(s) 482
LweI GCATC 1 cut(s) 433
MaeI CTAG 3 cut(s) 297, 650, 755
MaeII ACGT 4 cut(s) 58, 234, 627, 781
MaeIII GTNAC 2 cut(s) 37, 54
MalI GATC 7 cut(s) 135, 198, 231, 303, 309, 341, 438
MboI GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
MboII GAAGA 1 cut(s) 563
MfeI CAATTG 1 cut(s) 586
MflI RGATCY 2 cut(s) 133, 301
MluCI AATT 7 cut(s) 15, 140, 447, 494, 501, 586, 716
MnlI CCTC 8 cut(s) 75, 102, 153, 172, 280, 693, 720, 723
Mph1103I ATGCAT 1 cut(s) 467
MroI TCCGGA 1 cut(s) 439
MseI TTAA 6 cut(s) 144, 452, 639, 674, 777, 820
MspI CCGG 2 cut(s) 440, 633
MspR9I CCNGG 2 cut(s) 541, 812
MssI GTTTAAAC 1 cut(s) 778
MunI CAATTG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 2 cut(s) 541, 812
MwoI GCNNNNNNNGC 4 cut(s) 261, 278, 379, 588
NdeII GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
NlaIII CATG 4 cut(s) 127, 226, 396, 797
NlaIV GGNNCC 3 cut(s) 256, 367, 816
NmuCI GTSAC 2 cut(s) 37, 54
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 1 cut(s) 797
PaeI GCATGC 1 cut(s) 797
PasI CCCWGGG 1 cut(s) 540
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 785
PflMI CCANNNNNTGG 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 810
PmeI GTTTAAAC 1 cut(s) 778
Ppu21I YACGTR 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 539, 810
PspGI CCWGG 2 cut(s) 539, 810
PspN4I GGNNCC 3 cut(s) 256, 367, 816
PspPI GGNCC 2 cut(s) 254, 814
PsuI RGATCY 2 cut(s) 133, 301
RsaI GTAC 2 cut(s) 113, 237
RsaNI GTAC 2 cut(s) 112, 236
SaqAI TTAA 6 cut(s) 144, 452, 639, 674, 777, 820
Sau3AI GATC 7 cut(s) 133, 196, 229, 301, 307, 339, 436
Sau96I GGNCC 2 cut(s) 254, 814
ScrFI CCNGG 2 cut(s) 541, 812
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 417, 488
SinI GGWCC 1 cut(s) 814
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SpeI ACTAGT 1 cut(s) 754
SphI GCATGC 1 cut(s) 797
Sse9I AATT 7 cut(s) 15, 140, 447, 494, 501, 586, 716
SspMI CTAG 3 cut(s) 297, 650, 755
StyD4I CCNGG 2 cut(s) 539, 810
TaiI ACGT 4 cut(s) 61, 237, 630, 784
TaqI TCGA 5 cut(s) 183, 310, 338, 432, 549
TasI AATT 7 cut(s) 15, 140, 447, 494, 501, 586, 716
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 6 cut(s) 144, 452, 639, 674, 777, 820
Tru9I TTAA 6 cut(s) 144, 452, 639, 674, 777, 820
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 37, 54
Tsp45I GTSAC 2 cut(s) 37, 54
TspDTI ATGAA 3 cut(s) 162, 236, 646
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 2 cut(s) 140, 501
XceI RCATGY 1 cut(s) 797
XspI CTAG 3 cut(s) 297, 650, 755
ZraI GACGTC 1 cut(s) 628
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.