FvH4_5g14273

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000103
Physical Location & Seq
Forward (+)
8070561 .. 8071748
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14273.t1

Sequence Viewer

Length: 795 bp
ATGTACAACTTAATCCATTTGCAGTTACATCATTGTCTTCTAAAGCCTCCATCAACTTTCGGAGGCTTCAAAAGTTTGGAGCATCTTGAGATTCAGCATGTCACGTTTGCCCAACATGTATTTGACGGTTTCATTGTTGGTTGTCCTAAGCTCAAGACACTGATTTTGAAAGAGTGTGATGGTTTCAAAAATATCTGCATTGATGCACCAAATCTCAAATCGCTTGTCATAGATGGTTGTTTTGAGGATGTTAGTCTTCAGAATACCTTAAATCTTGCAAGTGTTCACATTACATTGGATTTCAATGTCAGATGGGCTGGTGGCAGTTCAGCCAATTTGCTCCAGTTTTTCGTTCACCTACCTAATATTCGTGACCTTCATCTTTTGTATTACTCTTTAAAGTATTTGGATGTTGGTCCCTTGCTAGGAAAGCTGCCTCAACCAATACGATCTCTGAATGATCTTCATATGGCCGTAGAATTTCCTCACGTCGACTATGATTATACTTTTGATGATGATTATGTGGAAGAAGCGAACTCCTGGTTAGAAAATTTAGGTGACAGCTTAGATTGTCAGCTCAACGAACTTCGACGTATAGAAATTGATTCCATCTCTGGTGCTAAAGCTGAATTAGATTTTATCAAATTTCTGCTGTTAAGTTCGCCTGTACTGGAGTGCATGACTCTTAAGTGGAGCACTGTTAAGCCTCATTTGCCTTTGGAACAGTTAAAAGAGGTAGTGGTCCAGTTTACGCCTGCCTCGTTGCAGGCTGAGTTAATCTTCTTGGACCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

265

Amino Acids

29.99

Weight (kDa)

5.09

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 6 - 119 4.6e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 11 - 100 1.4e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000103)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03461 FvH4_2g03490 FvH4_2g03500 FvH4_2g03500 FvH4_2g03510 FvH4_2g03510 FvH4_2g03521 FvH4_2g03521 FvH4_2g27100 FvH4_2g27110 FvH4_2g27130 FvH4_2g27150 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_2g40420 FvH4_3g20160 FvH4_3g20160 FvH4_3g33042 FvH4_4g17790 FvH4_5g14272 FvH4_5g14273 FvH4_5g20540
malus_domestica MD00G1039500.v1.1 MD05G1103500.v1.1 MD05G1103900.v1.1 MD05G1104300.v1.1 MD05G1104400.v1.1 MD05G1104600.v1.1 MD05G1157200.v1.1 MD05G1157700.v1.1 MD05G1157800.v1.1 MD08G1037400.v1.1 MD10G1108900.v1.1
prunus_persica Prupe.1G384700_v2.0.a1 Prupe.1G384700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148700_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G148900_v2.0.a1 Prupe.8G149000_v2.0.a1
pyrus_communis pycom05g10100 pycom05g14980 pycom08g02980 pycom10g09400 pycom15g02910
rosa_chinensis RchiOBHm_Chr3g0455511 RchiOBHm_Chr4g0421851 RchiOBHm_Chr4g0421921 RchiOBHm_Chr4g0421931 RchiOBHm_Chr5g0033951 RchiOBHm_Chr5g0033971 RchiOBHm_Chr6g0248641 RchiOBHm_Chr6g0248651 RchiOBHm_Chr6g0248671 RchiOBHm_Chr6g0248681 RchiOBHm_Chr6g0248731 RchiOBHm_Chr6g0248741 RchiOBHm_Chr6g0248771 RchiOBHm_Chr6g0248791 RchiOBHm_Chr6g0248851 RchiOBHm_Chr6g0248871 RchiOBHm_Chr6g0248881 RchiOBHm_Chr6g0248921 RchiOBHm_Chr6g0252081 RchiOBHm_Chr6g0252091 RchiOBHm_Chr6g0252101 RchiOBHm_Chr6g0267131 RchiOBHm_Chr6g0295981 RchiOBHm_Chr6g0295991 RchiOBHm_Chr6g0296021 RchiOBHm_Chr6g0300311 RchiOBHm_Chr7g0182631
rosa_laevigata RLG00000005114 RLG00000007652 RLG00000011348 RLG00000011741 RLG00000011742 RLG00000011743 RLG00000011744 RLG00000011745 RLG00000011747 RLG00000011748 RLG00000011749 RLG00000011750 RLG00000014028 RLG00000014036 RLG00000015111 RLG00000015113 RLG00000015115 RLG00000015117 RLG00000015119 RLG00000015123 RLG00000015124 RLG00000015127 RLG00000015128 RLG00000015129 RLG00000015132 RLG00000033513 RLG00000034608
rosa_multiflora Rmu_co8062356.1_g000001 Rmu_co8494777.1_g000001 Rmu_sc0000229.1_g000003 Rmu_sc0000529.1_g000001 Rmu_sc0000529.1_g000002 Rmu_sc0000529.1_g000003 Rmu_sc0001014.1_g000001 Rmu_sc0001150.1_g000007 Rmu_sc0001562.1_g000002 Rmu_sc0001562.1_g000004 Rmu_sc0001562.1_g000005 Rmu_sc0001562.1_g000017 Rmu_sc0001562.1_g000033 Rmu_sc0001562.1_g000035 Rmu_sc0001670.1_g000022 Rmu_sc0002393.1_g000007 Rmu_sc0002393.1_g000008 Rmu_sc0002393.1_g000009 Rmu_sc0002393.1_g000010 Rmu_sc0002393.1_g000011 Rmu_sc0002393.1_g000021 Rmu_sc0002393.1_g000023 Rmu_sc0002393.1_g000035 Rmu_sc0002393.1_g000037 Rmu_sc0002489.1_g000003 Rmu_sc0002938.1_g000047 Rmu_sc0003139.1_g000013 Rmu_sc0003139.1_g000014 Rmu_sc0003139.1_g000015 Rmu_sc0003139.1_g000017 Rmu_sc0004275.1_g000033 Rmu_sc0004275.1_g000036 Rmu_sc0004703.1_g000001 Rmu_sc0006276.1_g000003 Rmu_sc0010676.1_g000003 Rmu_sc0010676.1_g000004 Rmu_sc0010676.1_g000006 Rmu_sc0010676.1_g000007 Rmu_sc0013953.1_g000004 Rmu_ssc0000388.1_g000016
rosa_roxburghii Rroxscaffold_1G00015220 Rroxscaffold_1G00046270 Rroxscaffold_2G00090150 Rroxscaffold_2G00120650 Rroxscaffold_2G00123380 Rroxscaffold_3G00234080 Rroxscaffold_3G00271110 Rroxscaffold_7G00167900 Rroxscaffold_7G00171950 Rroxscaffold_7G00171970 Rroxscaffold_7G00171980 Rroxscaffold_7G00171990 Rroxscaffold_7G00172000 Rroxscaffold_7G00201050 Rroxscaffold_7G00212860 Rroxscaffold_7G00212880 Rroxscaffold_7G00212920 Rroxscaffold_7G00212940 Rroxscaffold_7G00212990 Rroxscaffold_7G00213060 Rroxscaffold_7G00213070 Rroxscaffold_7G00213080 Rroxscaffold_7G00213100 Rroxscaffold_7G00213110 Rroxscaffold_7G00213120 Rroxscaffold_7G00213130 Rroxscaffold_7G00213140 Rroxscaffold_7G00217950
rosa_rugosa Rorug04G0089100 Rorug04G0176100 Rorug05G0143700 Rorug05G0532600 Rorug05G0532700 Rorug05G0532800 Rorug05G0533100 Rorug05G0533200 Rorug05G0533300 Rorug05G0533400 Rorug05G0533500 Rorug05G0533500 Rorug05G0533700 Rorug05G0533800 Rorug05G0533900 Rorug05G0534000 Rorug05G0534100.1 Rorug05G0534200 Rorug06G0029200 Rorug06G0029300 Rorug06G0029400 Rorug06G0255600 Rorug06G0255800 Rorug06G0255800 Rorug06G0255900 Rorug06G0255900 Rorug06G0255900 Rorug06G0256000 Rorug06G0256100 Rorug06G0256300 Rorug06G0256400 Rorug06G0294900 Rorug06G0448600 Rorug06G0448600 Rorug07G0094000
rosa_samantha Rh3BG070200 Rh3CG325900 Rh5BG235500 Rh6AG049500 Rh6AG049600 Rh6AG049800 Rh6AG049900 Rh6AG050100 Rh6AG050200 Rh6AG050300 Rh6AG050400 Rh6AG050500 Rh6AG050800 Rh6AG051100 Rh6AG051500 Rh6AG151100 Rh6AG369300 Rh6AG369500 Rh6AG369600 Rh6AG369800 Rh6AG369900 Rh6AG407600 Rh6DG038100 Rh7CG053500 Rh7CG053600 Rh7DG051800
rosa_wichuraiana Rw3G005370 Rw3G025850 Rw5G021490 Rw6G004290 Rw6G004300 Rw6G004310 Rw6G004320 Rw6G004330 Rw6G004340 Rw6G004390 Rw6G004410 Rw6G004420 Rw6G004430 Rw6G004450 Rw6G004460 Rw6G004490 Rw6G004510 Rw6G004590 Rw6G013080 Rw6G032210 Rw6G032220 Rw6G032230 Rw6G032250 Rw6G035640 Rw7G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 3 cut(s) 479, 550, 644
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 2 cut(s) 5, 669
AfiI CCNNNNNNNGG 1 cut(s) 425
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 4 cut(s) 70, 169, 187, 304
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 539
AluBI AGCT 5 cut(s) 151, 433, 564, 577, 626
AluI AGCT 5 cut(s) 151, 433, 564, 577, 626
Alw21I GWGCWC 1 cut(s) 698
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 3 cut(s) 479, 550, 644
ArsI GACNNNNNNTTYG 4 cut(s) 148, 180, 210, 242
AspS9I GGNCC 3 cut(s) 416, 742, 787
AsuHPI GGTGA 2 cut(s) 347, 569
AvaII GGWCC 3 cut(s) 416, 742, 787
BbsI GAAGAC 2 cut(s) 29, 248
Bbv12I GWGCWC 1 cut(s) 698
BbvI GCAGC 1 cut(s) 420
BccI CCATC 5 cut(s) 58, 173, 227, 306, 617
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 1 cut(s) 541
BfaI CTAG 1 cut(s) 425
BfrI CTTAAG 1 cut(s) 686
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 541
Bme18I GGWCC 3 cut(s) 416, 742, 787
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 416, 742, 787
BmiI GGNNCC 2 cut(s) 418, 789
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 2 cut(s) 91, 193
BpiI GAAGAC 2 cut(s) 29, 248
BpmI CTGGAG 2 cut(s) 326, 692
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 343, 675, 745
BseBI CCWGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 253, 415
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 3 cut(s) 343, 675, 745
BseXI GCAGC 1 cut(s) 420
BshFI GGCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 698
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 698
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 449, 460
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 418, 789
BspTI CTTAAG 1 cut(s) 686
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 343, 675, 745
BssMI GATC 2 cut(s) 449, 460
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 3 cut(s) 128, 700, 726
BstAFI CTTAAG 1 cut(s) 686
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 756, 768
BstDEI CTNAG 3 cut(s) 147, 565, 771
BstF5I GGATG 2 cut(s) 253, 415
BstKTI GATC 2 cut(s) 452, 463
BstMBI GATC 2 cut(s) 449, 460
BstMWI GCNNNNNNNGC 2 cut(s) 430, 712
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 2 cut(s) 101, 119
BstSCI CCNGG 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 2 cut(s) 29, 248
BsuRI GGCC 1 cut(s) 473
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 2 cut(s) 253, 415
BtsIMutI CAGTG 2 cut(s) 158, 696
Cac8I GCNNGC 2 cut(s) 756, 768
Cfr13I GGNCC 3 cut(s) 416, 742, 787
Csp6I GTAC 2 cut(s) 4, 668
CviAII CATG 3 cut(s) 98, 116, 679
CviQI GTAC 2 cut(s) 4, 668
DdeI CTNAG 3 cut(s) 147, 565, 771
DpnI GATC 2 cut(s) 451, 462
DpnII GATC 2 cut(s) 449, 460
DraI TTTAAA 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 471
Eco47I GGWCC 3 cut(s) 416, 742, 787
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 539
FaeI CATG 3 cut(s) 101, 119, 682
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 97, 115, 678
FauNDI CATATG 1 cut(s) 468
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 2 cut(s) 260, 422
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 1 cut(s) 425
GluI GCNGC 1 cut(s) 434
GsuI CTGGAG 2 cut(s) 326, 692
HaeIII GGCC 1 cut(s) 473
Hin1II CATG 3 cut(s) 101, 119, 682
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 91, 605, 682
HphI GGTGA 2 cut(s) 347, 569
Hpy166II GTNNAC 4 cut(s) 286, 355, 493, 750
Hpy188I TCNGA 4 cut(s) 62, 261, 311, 456
Hpy188III TCNNGA 3 cut(s) 86, 154, 371
Hpy8I GTNNAC 4 cut(s) 286, 355, 493, 750
Hpy99I CGWCG 2 cut(s) 494, 594
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 3 cut(s) 128, 700, 726
HpyCH4IV ACGT 3 cut(s) 104, 489, 592
HpyCH4V TGCA 6 cut(s) 22, 198, 206, 278, 678, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 712
HpyF3I CTNAG 3 cut(s) 147, 565, 771
HpySE526I ACGT 3 cut(s) 104, 489, 592
Hsp92II CATG 3 cut(s) 101, 119, 682
Kzo9I GATC 2 cut(s) 449, 460
LmnI GCTCC 3 cut(s) 79, 345, 693
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 2 cut(s) 91, 193
MaeI CTAG 1 cut(s) 425
MaeII ACGT 3 cut(s) 104, 489, 592
MaeIII GTNAC 4 cut(s) 24, 100, 371, 557
MalI GATC 2 cut(s) 451, 462
MboI GATC 2 cut(s) 449, 460
MboII GAAGA 5 cut(s) 29, 248, 455, 539, 772
MhlI GDGCHC 1 cut(s) 698
MluCI AATT 6 cut(s) 334, 479, 550, 600, 629, 644
MlyI GAGTC 1 cut(s) 676
MnlI CCTC 8 cut(s) 56, 57, 238, 447, 495, 717, 727, 769
MseI TTAA 8 cut(s) 11, 269, 398, 656, 687, 702, 728, 776
MspCI CTTAAG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 541
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 430, 712
NdeI CATATG 1 cut(s) 468
NdeII GATC 2 cut(s) 449, 460
NlaIII CATG 3 cut(s) 101, 119, 682
NlaIV GGNNCC 2 cut(s) 418, 789
NmuCI GTSAC 3 cut(s) 100, 371, 557
NspI RCATGY 2 cut(s) 101, 119
PciI ACATGT 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 758
PfeI GAWTC 2 cut(s) 91, 605
PkrI GCNGC 1 cut(s) 435
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
PscI ACATGT 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 418, 789
PspPI GGNCC 3 cut(s) 416, 742, 787
RsaI GTAC 2 cut(s) 5, 669
RsaNI GTAC 2 cut(s) 4, 668
SalI GTCGAC 1 cut(s) 491
SaqAI TTAA 8 cut(s) 11, 269, 398, 656, 687, 702, 728, 776
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 2 cut(s) 449, 460
Sau96I GGNCC 3 cut(s) 416, 742, 787
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 2 cut(s) 91, 193
SinI GGWCC 3 cut(s) 416, 742, 787
SmlI CTYRAG 3 cut(s) 86, 152, 686
SmoI CTYRAG 3 cut(s) 86, 152, 686
Sse9I AATT 6 cut(s) 334, 479, 550, 600, 629, 644
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 539
TaaI ACNGT 3 cut(s) 128, 700, 726
TaiI ACGT 3 cut(s) 107, 492, 595
TaqI TCGA 2 cut(s) 492, 589
TasI AATT 6 cut(s) 334, 479, 550, 600, 629, 644
TatI WGTACW 2 cut(s) 3, 667
TfiI GAWTC 2 cut(s) 91, 605
Tru1I TTAA 8 cut(s) 11, 269, 398, 656, 687, 702, 728, 776
Tru9I TTAA 8 cut(s) 11, 269, 398, 656, 687, 702, 728, 776
TscAI CASTG 2 cut(s) 165, 703
TseFI GTSAC 3 cut(s) 100, 371, 557
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 3 cut(s) 100, 371, 557
TspDTI ATGAA 3 cut(s) 121, 368, 455
TspRI CASTG 2 cut(s) 165, 703
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 3 cut(s) 416, 742, 787
XapI RAATTY 3 cut(s) 479, 550, 644
XceI RCATGY 2 cut(s) 101, 119
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.