pycom04g05270

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000155
Physical Location & Seq
Forward (+)
5070203 .. 5072111
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05270.2

Sequence Viewer

Length: 1146 bp
ATGATCAGGTGGATCCATATTGCGGCAAAGTGTAATGTCGAAGAGCTTGATTTTGCGTTGAATGGCAAGCATACACCTGGGACATTAGAACTCCCAGCTTGCATCTTTCTTTGTGGATCTTTGAGGTCACTATTGGTGTACGTGGGTACAATTCTTAAAGCGCCCTCATTTGCTTGCTCAAGTAATCTCCAATGCTTAACGTTAAAAAGTGTTACGATGGACGAAGGGTTTTGCAAATGGATCTCAAGTTCCTGCAAATGCATTAAGAAATTGCAGCTTAGTTATGTTTCAATAGAAAATATCACCATTGAAAGCTCATCTTTGGAATCATTTAGTTTGGTGGGTTCCTCTTTACATGGCATTCGCTTACGCCATCTTAACATTTCATGTGAGAAGCTTATAGATATACATATAGAGTTTTATAATTTGGACAGCAGCAGCAAGTCAATGAATATTTTTGCTCCAAATCTGAAGTATTTGACATGGATCGGAAGTATATTGAATTACCATAATCTTGGGAAATTAACGTGTTTAGAAAAAGCTGAGATTTTTCTGAAGCGTAAGAAAGATGACTATGACTTTGACAAAATATTTGAGGTTCTGCGCAGCATCCGCAAGGTTAAAGCTCTTATTCTAAGTGAAGATACCACACAGGCACTGTTCAGGGAAGGTTCCATGCAACTGCAGTTCGATGATATTTCTTACTTGAGCTTGCATGCTGGGGGCGTGTTTGATGACCTTGTCCCAGCTATGGTCTCTCTTTTGAGAGGAATGCCCAACTTGAAAACTTTGCACATAAACTCTTACCCTCGATTCTTTGGCTCAAAATCGTGCAAGTTTAATAGAAAATATTGGAAATCCCAAAACTTGGACTTTGTTCATCGTCTCGAGGAGGTAAAAATAGAGCTTTCCAACGGGTACAATGGAATGGAGTTTGCAAGGTATATTCTGGAGCATGCTCAGAATTTGAAGAAAATGGTCATACATTATCCACCTCAGCAATCATATGTTGAAGGGAGGTTAAGCAAAAGCGAGATGATTTCTACTACCTCCATTGACTATCAGAAAAGAGATCTGCATAAACTACAAAGCTGGTCTGAATCTGGTACTTACTATAGGTATTTGATTCAGGGAAAGTCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

382

Amino Acids

43.66

Weight (kDa)

8.87

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
Acc16I TGCGCA 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 868
AciI CCGC 2 cut(s) 23, 613
AclI AACGTT 1 cut(s) 200
AclWI GGATC 5 cut(s) 7, 20, 124, 248, 494
AcsI RAATTY 1 cut(s) 964
AcuI CTGAAG 2 cut(s) 491, 575
AfaI GTAC 4 cut(s) 140, 148, 920, 1108
AfiI CCNNNNNNNGG 3 cut(s) 22, 751, 868
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 7 cut(s) 61, 291, 311, 502, 784, 970, 1013
AjnI CCWGG 1 cut(s) 76
AloI GAACNNNNNNTCC 2 cut(s) 232, 264
Alw26I GTCTC 2 cut(s) 760, 890
AlwI GGATC 5 cut(s) 7, 20, 124, 248, 494
AlwNI CAGNNNCTG 1 cut(s) 658
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 1 cut(s) 1140
ApeKI GCWGC 4 cut(s) 274, 435, 438, 606
ApoI RAATTY 1 cut(s) 964
ArsI GACNNNNNNTTYG 4 cut(s) 563, 575, 595, 607
AspLEI GCGC 2 cut(s) 163, 606
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 887
BamHI GGATCC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 4 cut(s) 286, 447, 450, 618
BccI CCATC 2 cut(s) 211, 381
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 760, 890
BfmI CTRYAG 2 cut(s) 683, 1114
BfoI RGCGCY 1 cut(s) 164
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 5 cut(s) 24, 275, 436, 439, 607
BlsI GCNGC 5 cut(s) 25, 276, 437, 440, 608
Bme1390I CCNGG 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 887
BmiI GGNNCC 3 cut(s) 14, 346, 673
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 111, 618
BpmI CTGGAG 1 cut(s) 971
Bpu10I CCTNAGC 1 cut(s) 996
BpuEI CTTGAG 3 cut(s) 163, 229, 727
BsaAI YACGTR 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 751, 868
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 3 cut(s) 22, 751, 868
BseMII CTCAG 3 cut(s) 534, 974, 1010
BseRI GAGGAG 1 cut(s) 905
BseXI GCAGC 4 cut(s) 286, 447, 450, 618
BseYI CCCAGC 3 cut(s) 94, 719, 745
BshFI GGCC 1 cut(s) 1142
BsiHKCI CYCGRG 1 cut(s) 887
BslFI GGGAC 2 cut(s) 94, 728
BslI CCNNNNNNNGG 3 cut(s) 22, 751, 868
BsmAI GTCTC 2 cut(s) 760, 890
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 2 cut(s) 94, 728
BsmI GAATGC 2 cut(s) 360, 777
BsnI GGCC 1 cut(s) 1142
Bso31I GGTCTC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 887
Bsp143I GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
BspACI CCGC 2 cut(s) 23, 613
BspANI GGCC 1 cut(s) 1142
BspCNI CTCAG 3 cut(s) 535, 973, 1009
BspLI GGNNCC 3 cut(s) 14, 346, 673
BspMAI CTGCAG 1 cut(s) 687
BspPI GGATC 5 cut(s) 7, 20, 124, 248, 494
BspQI GCTCTTC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 760
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 660
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 6 cut(s) 68, 100, 175, 713, 717, 957
BstDEI CTNAG 5 cut(s) 278, 543, 635, 960, 996
BstF5I GGATG 1 cut(s) 609
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 2 cut(s) 163, 606
BstKTI GATC 6 cut(s) 6, 15, 119, 243, 489, 1075
BstMAI GTCTC 2 cut(s) 760, 890
BstMBI GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 612
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 2 cut(s) 719, 959
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 2 cut(s) 683, 1114
BstV1I GCAGC 4 cut(s) 286, 447, 450, 618
BstX2I RGATCY 4 cut(s) 12, 116, 240, 1072
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 4 cut(s) 12, 116, 240, 1072
BsuRI GGCC 1 cut(s) 1142
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 6 cut(s) 68, 100, 175, 713, 717, 957
CaiI CAGNNNCTG 1 cut(s) 658
CfoI GCGC 2 cut(s) 163, 606
Csp6I GTAC 4 cut(s) 139, 147, 919, 1107
CviAII CATG 6 cut(s) 356, 387, 483, 676, 716, 956
CviQI GTAC 4 cut(s) 139, 147, 919, 1107
DdeI CTNAG 5 cut(s) 278, 543, 635, 960, 996
DpnI GATC 6 cut(s) 5, 14, 118, 242, 488, 1074
DpnII GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 760
Eco57I CTGAAG 2 cut(s) 491, 575
Eco88I CYCGRG 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 890
FaeI CATG 6 cut(s) 359, 390, 486, 679, 719, 959
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 2 cut(s) 94, 728
FatI CATG 6 cut(s) 355, 386, 482, 675, 715, 955
FauNDI CATATG 1 cut(s) 1006
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 24, 275, 436, 439, 607
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 5 cut(s) 24, 275, 436, 439, 607
FspI TGCGCA 1 cut(s) 605
GlaI GCGC 2 cut(s) 162, 605
GluI GCNGC 5 cut(s) 24, 275, 436, 439, 607
GsaI CCCAGC 3 cut(s) 98, 723, 749
GsuI CTGGAG 1 cut(s) 971
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 1 cut(s) 1142
HhaI GCGC 2 cut(s) 163, 606
Hin1II CATG 6 cut(s) 359, 390, 486, 679, 719, 959
Hin6I GCGC 2 cut(s) 161, 604
HinP1I GCGC 2 cut(s) 161, 604
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 326, 813, 1100, 1126
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 6 cut(s) 471, 491, 555, 963, 1065, 1099
Hpy188III TCNNGA 2 cut(s) 887, 950
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 218, 662, 1007
HpyCH4III ACNGT 1 cut(s) 660
HpyCH4IV ACGT 3 cut(s) 141, 200, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 612
HpyF3I CTNAG 5 cut(s) 278, 543, 635, 960, 996
HpySE526I ACGT 3 cut(s) 141, 200, 527
Hsp92II CATG 6 cut(s) 359, 390, 486, 679, 719, 959
HspAI GCGC 2 cut(s) 161, 604
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 466, 952
Lsp1109I GCAGC 4 cut(s) 286, 447, 450, 618
LweI GCATC 2 cut(s) 111, 618
MaeII ACGT 3 cut(s) 141, 200, 527
MaeIII GTNAC 2 cut(s) 126, 211
MalI GATC 6 cut(s) 5, 14, 118, 242, 488, 1074
MboI GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
MboII GAAGA 3 cut(s) 53, 653, 982
MflI RGATCY 4 cut(s) 12, 116, 240, 1072
MluCI AATT 6 cut(s) 150, 269, 424, 502, 521, 964
MmeI TCCRAC 1 cut(s) 936
Mph1103I ATGCAT 1 cut(s) 263
MseI TTAA 9 cut(s) 156, 197, 203, 264, 378, 524, 621, 840, 1022
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 2 cut(s) 360, 777
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 612
NdeI CATATG 1 cut(s) 1006
NdeII GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
NlaIII CATG 6 cut(s) 359, 390, 486, 679, 719, 959
NlaIV GGNNCC 3 cut(s) 14, 346, 673
NmuCI GTSAC 1 cut(s) 126
NsbI TGCGCA 1 cut(s) 605
NsiI ATGCAT 1 cut(s) 263
NspI RCATGY 2 cut(s) 719, 959
PaeI GCATGC 2 cut(s) 719, 959
PaeR7I CTCGAG 1 cut(s) 887
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 2 cut(s) 360, 777
PfeI GAWTC 4 cut(s) 326, 813, 1100, 1126
PflFI GACNNNGTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 868
PkrI GCNGC 5 cut(s) 25, 276, 437, 440, 608
Ppu21I YACGTR 1 cut(s) 142
PsiI TTATAA 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 3 cut(s) 94, 719, 745
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 3 cut(s) 14, 346, 673
PstI CTGCAG 1 cut(s) 687
PstNI CAGNNNCTG 1 cut(s) 658
PsuI RGATCY 4 cut(s) 12, 116, 240, 1072
PsyI GACNNNGTC 1 cut(s) 740
RsaI GTAC 4 cut(s) 140, 148, 920, 1108
RsaNI GTAC 4 cut(s) 139, 147, 919, 1107
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 9 cut(s) 156, 197, 203, 264, 378, 524, 621, 840, 1022
SatI GCNGC 5 cut(s) 24, 275, 436, 439, 607
Sau3AI GATC 6 cut(s) 3, 12, 116, 240, 486, 1072
ScrFI CCNGG 1 cut(s) 78
SfaNI GCATC 2 cut(s) 111, 618
SfcI CTRYAG 2 cut(s) 683, 1114
Sfr274I CTCGAG 1 cut(s) 887
SlaI CTCGAG 1 cut(s) 887
SmlI CTYRAG 4 cut(s) 178, 244, 706, 887
SmoI CTYRAG 4 cut(s) 178, 244, 706, 887
SphI GCATGC 2 cut(s) 719, 959
Sse9I AATT 6 cut(s) 150, 269, 424, 502, 521, 964
SsiI CCGC 2 cut(s) 23, 613
SspI AATATT 3 cut(s) 454, 591, 851
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 660
TaiI ACGT 3 cut(s) 144, 203, 530
TaqI TCGA 4 cut(s) 39, 690, 811, 888
TasI AATT 6 cut(s) 150, 269, 424, 502, 521, 964
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 4 cut(s) 326, 813, 1100, 1126
Tru1I TTAA 9 cut(s) 156, 197, 203, 264, 378, 524, 621, 840, 1022
Tru9I TTAA 9 cut(s) 156, 197, 203, 264, 378, 524, 621, 840, 1022
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 4 cut(s) 274, 435, 438, 606
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 3 cut(s) 375, 464, 869
TspRI CASTG 1 cut(s) 663
Tth111I GACNNNGTC 1 cut(s) 740
Van91I CCANNNNNTGG 1 cut(s) 868
XapI RAATTY 1 cut(s) 964
XceI RCATGY 2 cut(s) 719, 959
XhoI CTCGAG 1 cut(s) 887
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.