Rorug03G0138400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Forward (+)
11370390 .. 11372851
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138400.1

Sequence Viewer

Length: 987 bp
ATGGCAACGGTGGCAGCTGGACCACGTGTCCAGTTGGTGATATCAGATCATTACAATAAGTTCCGTCAGTGTCATAAATGTAGTCGGGTCGCATTTCCACAAAGGTCGAGTCTTTCTTCTTATAAGTATTCCAGTTCATTGTTCTCTGCTTCATCTTTATCTTTGAGTCTTGAAAAGAGGGTGAGGAAGGGTTTTAGGAGAGGAGTGGCTATAACGGCGATGGCGGATTCGGGTACGAGCACAGTCCTTGTCACTGGAGCTGGTGGTAGAACTGGCCAGATAGTTTATAAGAAGTTGAAGGAGAGGTCTGATCAGTATGTTGCTAGAGGTCTGGTTAGAACAGAAGAGAGCAAAGCTAAAATTGGTGGATCAGATGATCTTTATGTTGGAGATATAACAGATGCCGACAGCGTTGTACCTGCGATCCAAGGTATCGATGCCCTCGTGATCCTTACAAGTGCTGTGCCAAAGATGAAACCTGGTTATAATCCAAGCAAGGGTGGGAGGCCCGAGTTCTACTTTGAAGATGGCCAGTATCCTGAACAGGTTGATTGGCTTGGACAGAAAAACCAAATTGATGCTGCTAAGGCTGCGGGAGTGAAGCAAATTGTATTGGTTGGGTCTATGGGTGGAACTGATTTGAGTAACCCCCTTAACAGCTTGGGTAATGGAAATATCTTGGTTTGGAAGAGGAAGGCAGAGGAGTACTTGGCTGACTCTGGTATTCCATACACAATCATAAGGGCTGGAGGCTTGCAAGACAAAGAAGGTGGTATCCGTGAACTTCTTATTGGGAAAGATGACGAGCTTCTGAAGACAGAGACAAGAACCATTGCTAGGGCTGACGTCGCAGAAGTCTGCGTTCAGGCATTGCAATTTGAGGAGGCCAAAAACAAGGCATTTGATTTAGCCTCAAAGCCTGAGGGAACCGGAACACCTACCAAAGATTTCAAGGCTCTCTTTTCCCAGATCACCACTCGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

328

Amino Acids

35.5

Weight (kDa)

9.21

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 79 - 247 3.8e-08 NmrA-like family
NAD_binding_10 PF13460 86 - 292 9.7e-35 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 123, 288, 486
AatII GACGTC 1 cut(s) 849
Acc36I ACCTGC 1 cut(s) 427
AciI CCGC 2 cut(s) 224, 593
AclWI GGATC 3 cut(s) 376, 418, 442
AcoI YGGCCR 2 cut(s) 274, 529
AcuI CTGAAG 1 cut(s) 833
AcvI CACGTG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 846
AfaI GTAC 3 cut(s) 235, 417, 707
AfiI CCNNNNNNNGG 2 cut(s) 497, 837
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 4 cut(s) 173, 298, 524, 952
AhdI GACNNNNNGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AluBI AGCT 5 cut(s) 17, 260, 356, 660, 808
AluI AGCT 5 cut(s) 17, 260, 356, 660, 808
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 815
AlwI GGATC 3 cut(s) 376, 418, 442
Ama87I CYCGRG 1 cut(s) 509
AoxI GGCC 4 cut(s) 274, 506, 529, 885
ApeKI GCWGC 3 cut(s) 14, 581, 590
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AspS9I GGNCC 2 cut(s) 20, 507
AsuHPI GGTGA 3 cut(s) 49, 193, 964
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 921
BalI TGGCCA 2 cut(s) 276, 531
BauI CACGAG 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 821
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 26, 568, 577
BccI CCATC 2 cut(s) 214, 521
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 2 cut(s) 546, 785
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 815
BfaI CTAG 2 cut(s) 324, 837
BfuAI ACCTGC 1 cut(s) 427
BfuI GTATCC 2 cut(s) 546, 785
BisI GCNGC 3 cut(s) 15, 582, 591
BlsI GCNGC 3 cut(s) 16, 583, 592
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 20
BmeRI GACNNNNNGTC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 2 cut(s) 20, 507
BmiI GGNNCC 1 cut(s) 928
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 3 cut(s) 391, 427, 568
BpiI GAAGAC 1 cut(s) 821
BpmI CTGGAG 2 cut(s) 276, 768
Bpu10I CCTNAGC 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 846
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 837
Bse1I ACTGG 5 cut(s) 31, 132, 259, 277, 532
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 2 cut(s) 831, 869
BseBI CCWGG 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 497, 837
BseMI GCAATG 2 cut(s) 831, 869
BseMII CTCAG 1 cut(s) 912
BseNI ACTGG 5 cut(s) 31, 132, 259, 277, 532
BseRI GAGGAG 3 cut(s) 216, 716, 896
BseXI GCAGC 3 cut(s) 26, 568, 577
BshFI GGCC 4 cut(s) 276, 508, 531, 887
BshVI ATCGAT 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 1 cut(s) 930
BslI CCNNNNNNNGG 2 cut(s) 497, 837
BsmAI GTCTC 1 cut(s) 815
BsnI GGCC 4 cut(s) 276, 508, 531, 887
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
BspACI CCGC 2 cut(s) 224, 593
BspANI GGCC 4 cut(s) 276, 508, 531, 887
BspCNI CTCAG 1 cut(s) 913
BspDI ATCGAT 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 928
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 3 cut(s) 376, 418, 442
BsrDI GCAATG 2 cut(s) 831, 869
BsrI ACTGG 5 cut(s) 31, 132, 259, 277, 532
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
BssNI GRCGYC 1 cut(s) 846
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 10, 244
Bst6I CTCTTC 2 cut(s) 339, 683
BstACI GRCGYC 1 cut(s) 846
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 755
BstDEI CTNAG 2 cut(s) 585, 921
BstKTI GATC 7 cut(s) 49, 313, 371, 379, 426, 450, 972
BstMAI GTCTC 1 cut(s) 815
BstMBI GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
BstMWI GCNNNNNNNGC 5 cut(s) 11, 215, 587, 590, 848
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 26, 568, 577
BstV2I GAAGAC 1 cut(s) 821
Bsu15I ATCGAT 1 cut(s) 435
Bsu36I CCTNAGG 1 cut(s) 921
BsuI GTATCC 2 cut(s) 546, 785
BsuRI GGCC 4 cut(s) 276, 508, 531, 887
BsuTUI ATCGAT 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 74, 252
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 20, 507
ClaI ATCGAT 1 cut(s) 435
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 3 cut(s) 234, 416, 706
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviQI GTAC 3 cut(s) 234, 416, 706
DdeI CTNAG 2 cut(s) 585, 921
DpnI GATC 7 cut(s) 48, 312, 370, 378, 425, 449, 971
DpnII GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
DriI GACNNNNNGTC 1 cut(s) 26
EaeI YGGCCR 2 cut(s) 274, 529
Eam1104I CTCTTC 2 cut(s) 339, 683
Eam1105I GACNNNNNGTC 1 cut(s) 26
EarI CTCTTC 2 cut(s) 339, 683
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 427
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 833
Eco72I CACGTG 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 921
Eco88I CYCGRG 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 478
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FauI CCCGC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 15, 582, 591
Fsp4HI GCNGC 3 cut(s) 15, 582, 591
FspBI CTAG 2 cut(s) 324, 837
GluI GCNGC 3 cut(s) 15, 582, 591
GsuI CTGGAG 2 cut(s) 276, 768
HaeIII GGCC 4 cut(s) 276, 508, 531, 887
HapII CCGG 1 cut(s) 930
Hin1I GRCGYC 1 cut(s) 846
HinfI GANTC 4 cut(s) 109, 166, 227, 716
HpaII CCGG 1 cut(s) 930
HphI GGTGA 3 cut(s) 49, 193, 964
Hpy166II GTNNAC 1 cut(s) 782
Hpy188I TCNGA 4 cut(s) 46, 310, 373, 813
Hpy188III TCNNGA 3 cut(s) 170, 445, 539
Hpy8I GTNNAC 1 cut(s) 782
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 4 cut(s) 181, 292, 688, 761
HpyCH4III ACNGT 2 cut(s) 10, 244
HpyCH4IV ACGT 2 cut(s) 25, 846
HpyCH4V TGCA 2 cut(s) 757, 874
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 215, 587, 590, 848
HpyF3I CTNAG 2 cut(s) 585, 921
HpySE526I ACGT 2 cut(s) 25, 846
Hsp92I GRCGYC 1 cut(s) 846
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 3 cut(s) 26, 568, 577
LweI GCATC 3 cut(s) 391, 427, 568
MabI ACCWGGT 1 cut(s) 478
MaeI CTAG 2 cut(s) 324, 837
MaeII ACGT 2 cut(s) 25, 846
MaeIII GTNAC 2 cut(s) 250, 644
MalI GATC 7 cut(s) 48, 312, 370, 378, 425, 449, 971
MboI GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
MboII GAAGA 5 cut(s) 108, 356, 536, 700, 826
MhlI GDGCHC 1 cut(s) 242
MlsI TGGCCA 2 cut(s) 276, 531
MluCI AATT 4 cut(s) 360, 573, 606, 875
MluNI TGGCCA 2 cut(s) 276, 531
MlyI GAGTC 3 cut(s) 118, 175, 710
MmeI TCCRAC 1 cut(s) 367
Mox20I TGGCCA 2 cut(s) 276, 531
MscI TGGCCA 2 cut(s) 276, 531
MseI TTAA 1 cut(s) 654
Msp20I TGGCCA 2 cut(s) 276, 531
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 930
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 5 cut(s) 11, 215, 587, 590, 848
NdeII GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
NlaIV GGNNCC 1 cut(s) 928
NmuCI GTSAC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 3 cut(s) 16, 583, 592
PleI GAGTC 3 cut(s) 117, 174, 710
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 3 cut(s) 117, 174, 710
Ppu21I YACGTR 1 cut(s) 26
PsiI TTATAA 3 cut(s) 123, 288, 486
Psp6I CCWGG 1 cut(s) 478
PspCI CACGTG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 928
PspPI GGNCC 2 cut(s) 20, 507
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 3 cut(s) 235, 417, 707
RsaNI GTAC 3 cut(s) 234, 416, 706
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 3 cut(s) 15, 582, 591
Sau3AI GATC 7 cut(s) 46, 310, 368, 376, 423, 447, 969
Sau96I GGNCC 2 cut(s) 20, 507
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 3 cut(s) 118, 175, 710
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 3 cut(s) 391, 427, 568
SinI GGWCC 1 cut(s) 20
Sse9I AATT 4 cut(s) 360, 573, 606, 875
SsiI CCGC 2 cut(s) 224, 593
SspMI CTAG 2 cut(s) 324, 837
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 10, 244
TaiI ACGT 2 cut(s) 28, 849
TaqI TCGA 2 cut(s) 107, 435
TasI AATT 4 cut(s) 360, 573, 606, 875
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 2 cut(s) 74, 259
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 14, 581, 590
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 126, 141, 488
TspGWI ACGGA 2 cut(s) 53, 767
TspRI CASTG 2 cut(s) 74, 259
VpaK11BI GGWCC 1 cut(s) 20
XspI CTAG 2 cut(s) 324, 837
ZraI GACGTC 1 cut(s) 847
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.