FvH4_5g20611

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000155
Physical Location & Seq
Forward (+)
12226258 .. 12228951
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20611.t1

Sequence Viewer

Length: 1209 bp
ATGGAGCACATGAACAAGTCATTGGCAACTGCGAGTTCTCAAGCCGAAGGTGTTTGTGCTAACTATGCAGTAGATAGATTGACTAATGTTCCACGGGAAGTTGCAAATCATATTCTTGCATTTCTTTGTTTTAAGGATCTCATTCGACTAGGAGCCGTGTCCAAAATGGGCAGAGTTTTTTCTCCATCAGCCCCATCATTGAAATTTTCTGCCCAAAGGGCAAACAGGCAGAAACAGTATAACTTGTTGAATTCTATAGATAGGTACATGATTCATCGTGGGGATGATAAGATAAAGCACTTTTGTGTTGATTGGAGATTCAGTGCAGGCGTTTCTGAAGAGGGTTTCCGAATGATGTCATGGATCCTTATTGCAGTAAGGTGTAATGTTGAAGTGCTTGAACTTAGGTTGTTTGTGCCTGAATTGAATAAGCTTGAACCAGATGGGACGGTCCTTGAATTGCCATCTTGTGTTTATTGTTGTGAATCTTTGAGGTCTCTATCGATCGACACACAGACAATTCTTAAAGCACCCTCCGGTACTTGTTCCAATAATCTTCAGTATTTGAAGTTAACACATGTTAGAACGGATGATGACTTTGGAAAATGGATCTCCCGCTCATGCATTAAGGAATTATTGTTATTTGAAGTTAAAGTGGGAAGTTTCACTGTGGACAGCCCATCTTTGGAATCATTCATCTTTGACTACAAACATTACAATCGTCCCTGCCATCTTAGCATCTCAGGTGAGAAGCTTACAACGATAAGAATAGAGTGGGGATTCTACAATACTATCAGTGACACTACCAGATCCTTAAATGTTTTTGCTCCAAATCTTAAATATTTGAAATGGATTGGGAGTTTGTTGAATTACCAAAATCTGGGGAAATTTTTGTGTTTGGAGAAAGCTCAGATTTTTCTGAAGCACAAGGGAGATGACTATGACTTTGAGAATGCATATGAGGTTCTTCGCAGTTTATGCAGTGTTAAGATTTTGCTCAGGGAGGTTTTAGTGCACGCACAATTGGATGAAGTTACTTACTTGAGTATGCATATTATGAGCTTGAGTGATGACCTTGTCCCTGCAATGATTTCTCTTCTGAAAGGAATGCCTAATTTGAGTACTTTGTACTTAAAATCTTACCCTTCCTTGCAGATGGATAAACCAAAAGCATGTGGTTTTAAGAGTAAATACTGGAAATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

403

Amino Acids

45.95

Weight (kDa)

8.66

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 880
AccBSI CCGCTC 1 cut(s) 618
AciI CCGC 1 cut(s) 616
AclWI GGATC 5 cut(s) 144, 358, 371, 617, 804
AcsI RAATTY 3 cut(s) 203, 250, 887
AcuI CTGAAG 3 cut(s) 357, 542, 941
AfaI GTAC 4 cut(s) 266, 541, 1123, 1130
AfiI CCNNNNNNNGG 2 cut(s) 685, 880
AflIII ACRYGT 1 cut(s) 577
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AleI CACNNNNGTG 1 cut(s) 303
AluBI AGCT 4 cut(s) 433, 754, 908, 1062
AluI AGCT 4 cut(s) 433, 754, 908, 1062
Alw21I GWGCWC 2 cut(s) 9, 1017
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 1013
AlwI GGATC 5 cut(s) 144, 358, 371, 617, 804
ApaLI GTGCAC 1 cut(s) 1013
ApoI RAATTY 3 cut(s) 203, 250, 887
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 758
AvaII GGWCC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 1017
BamHI GGATCC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 9, 1017
BccI CCATC 7 cut(s) 193, 202, 437, 472, 688, 738, 1150
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 1123
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 154, 365
BmsI GCATC 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 998
BpuEI CTTGAG 3 cut(s) 24, 1063, 1084
Bsa29I ATCGAT 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 536
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 2 cut(s) 685, 880
Bse1I ACTGG 1 cut(s) 1199
Bse3DI GCAATG 1 cut(s) 1092
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 3 cut(s) 289, 595, 1033
BseLI CCNNNNNNNGG 2 cut(s) 685, 880
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 3 cut(s) 756, 923, 1012
BseNI ACTGG 1 cut(s) 1199
BseSI GKGCMC 1 cut(s) 1017
BsgI GTGCAG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 507
BshVI ATCGAT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 507
BsiHKAI GWGCWC 2 cut(s) 9, 1017
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 3 cut(s) 460, 708, 1064
BslI CCNNNNNNNGG 2 cut(s) 685, 880
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 3 cut(s) 460, 708, 1064
BsmI GAATGC 2 cut(s) 958, 1113
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 9, 1017
Bsp143I GATC 5 cut(s) 136, 363, 504, 609, 809
BspACI CCGC 1 cut(s) 616
BspCNI CTCAG 3 cut(s) 755, 922, 1011
BspDI ATCGAT 1 cut(s) 503
BspLI GGNNCC 2 cut(s) 154, 365
BspPI GGATC 5 cut(s) 144, 358, 371, 617, 804
BspTNI GGTCTC 1 cut(s) 501
BsrBI CCGCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 1 cut(s) 1199
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 5 cut(s) 136, 363, 504, 609, 809
Bst4CI ACNGT 3 cut(s) 237, 451, 670
Bst6I CTCTTC 2 cut(s) 333, 1101
BstAPI GCANNNNNTGC 1 cut(s) 978
BstC8I GCNNGC 2 cut(s) 328, 1017
BstDEI CTNAG 5 cut(s) 404, 734, 742, 909, 998
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 289, 595, 1033
BstKTI GATC 5 cut(s) 139, 366, 507, 612, 812
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 5 cut(s) 136, 363, 504, 609, 809
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 4 cut(s) 65, 218, 735, 978
BstNSI RCATGY 2 cut(s) 581, 1176
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 1017
BstX2I RGATCY 4 cut(s) 136, 363, 609, 809
BstYI RGATCY 4 cut(s) 136, 363, 609, 809
Bsu15I ATCGAT 1 cut(s) 503
BsuTUI ATCGAT 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 3 cut(s) 289, 595, 1033
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 4 cut(s) 328, 666, 802, 988
Cac8I GCNNGC 2 cut(s) 328, 1017
Cfr13I GGNCC 1 cut(s) 451
ClaI ATCGAT 1 cut(s) 503
Csp6I GTAC 4 cut(s) 265, 540, 1122, 1129
CviAII CATG 6 cut(s) 10, 268, 360, 578, 621, 1173
CviJI RGCY 8 cut(s) 44, 155, 191, 433, 678, 754, 908, 1062
CviKI_1 RGCY 8 cut(s) 44, 155, 191, 433, 678, 754, 908, 1062
CviQI GTAC 4 cut(s) 265, 540, 1122, 1129
DdeI CTNAG 5 cut(s) 404, 734, 742, 909, 998
DpnI GATC 5 cut(s) 138, 365, 506, 611, 811
DpnII GATC 5 cut(s) 136, 363, 504, 609, 809
Eam1104I CTCTTC 2 cut(s) 333, 1101
EarI CTCTTC 2 cut(s) 333, 1101
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 3 cut(s) 357, 542, 941
EcoRI GAATTC 1 cut(s) 250
EcoT22I ATGCAT 3 cut(s) 626, 958, 1053
FaeI CATG 6 cut(s) 13, 271, 363, 581, 624, 1176
FaqI GGGAC 3 cut(s) 460, 708, 1064
FatI CATG 6 cut(s) 9, 267, 359, 577, 620, 1172
FauI CCCGC 1 cut(s) 623
FauNDI CATATG 1 cut(s) 958
FokI GGATG 3 cut(s) 296, 602, 1040
FspBI CTAG 1 cut(s) 149
HapII CCGG 1 cut(s) 537
Hin1II CATG 6 cut(s) 13, 271, 363, 581, 624, 1176
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 2 cut(s) 431, 752
HinfI GANTC 5 cut(s) 271, 318, 485, 689, 780
HpaI GTTAAC 1 cut(s) 573
HpaII CCGG 1 cut(s) 537
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 3 cut(s) 573, 673, 1015
Hpy188I TCNGA 5 cut(s) 337, 350, 912, 921, 1101
Hpy8I GTNNAC 3 cut(s) 573, 673, 1015
HpyAV CCTTC 2 cut(s) 41, 1155
HpyCH4III ACNGT 3 cut(s) 237, 451, 670
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 218, 735, 978
HpyF3I CTNAG 5 cut(s) 404, 734, 742, 909, 998
Hsp92II CATG 6 cut(s) 13, 271, 363, 581, 624, 1176
KspAI GTTAAC 1 cut(s) 573
Kzo9I GATC 5 cut(s) 136, 363, 504, 609, 809
LmnI GCTCC 3 cut(s) 4, 152, 832
LweI GCATC 1 cut(s) 747
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 797, 1033
MalI GATC 5 cut(s) 138, 365, 506, 611, 811
MbiI CCGCTC 1 cut(s) 618
MboI GATC 5 cut(s) 136, 363, 504, 609, 809
MboII GAAGA 4 cut(s) 350, 548, 959, 1088
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 4 cut(s) 136, 363, 609, 809
MhlI GDGCHC 2 cut(s) 9, 1017
MnlI CCTC 5 cut(s) 334, 486, 544, 955, 997
Mph1103I ATGCAT 3 cut(s) 626, 958, 1053
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 537
MunI CAATTG 1 cut(s) 1022
Mva1269I GAATGC 2 cut(s) 958, 1113
MwoI GCNNNNNNNGC 4 cut(s) 65, 218, 735, 978
NdeI CATATG 1 cut(s) 958
NdeII GATC 5 cut(s) 136, 363, 504, 609, 809
NlaIII CATG 6 cut(s) 13, 271, 363, 581, 624, 1176
NlaIV GGNNCC 2 cut(s) 154, 365
NmuCI GTSAC 1 cut(s) 797
NsiI ATGCAT 3 cut(s) 626, 958, 1053
NspI RCATGY 2 cut(s) 581, 1176
OliI CACNNNNGTG 1 cut(s) 303
PciI ACATGT 1 cut(s) 577
PctI GAATGC 2 cut(s) 958, 1113
PfeI GAWTC 5 cut(s) 271, 318, 485, 689, 780
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 880
Ple19I CGATCG 1 cut(s) 507
PscI ACATGT 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 154, 365
PspPI GGNCC 1 cut(s) 451
PsuI RGATCY 4 cut(s) 136, 363, 609, 809
PsyI GACNNNGTC 1 cut(s) 1076
PvuI CGATCG 1 cut(s) 507
RsaI GTAC 4 cut(s) 266, 541, 1123, 1130
RsaNI GTAC 4 cut(s) 265, 540, 1122, 1129
RseI CAYNNNNRTG 1 cut(s) 303
Sau3AI GATC 5 cut(s) 136, 363, 504, 609, 809
Sau96I GGNCC 1 cut(s) 451
ScaI AGTACT 1 cut(s) 1123
SduI GDGCHC 2 cut(s) 9, 1017
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 3 cut(s) 39, 1042, 1063
SmoI CTYRAG 3 cut(s) 39, 1042, 1063
SsiI CCGC 1 cut(s) 616
SspI AATATT 1 cut(s) 842
SspMI CTAG 1 cut(s) 149
TaaI ACNGT 3 cut(s) 237, 451, 670
TaqI TCGA 3 cut(s) 145, 503, 507
TatI WGTACW 2 cut(s) 1121, 1128
TfiI GAWTC 5 cut(s) 271, 318, 485, 689, 780
TscAI CASTG 4 cut(s) 328, 673, 802, 988
TseFI GTSAC 1 cut(s) 797
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 4 cut(s) 26, 263, 685, 1044
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 4 cut(s) 328, 673, 802, 988
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 880
VneI GTGCAC 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 3 cut(s) 203, 250, 887
XceI RCATGY 2 cut(s) 581, 1176
XspI CTAG 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 1123
Zsp2I ATGCAT 3 cut(s) 626, 958, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.