Rh7BG221500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000155
Physical Location & Seq
Forward (+)
19061859 .. 19063194
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG221500.1

Sequence Viewer

Length: 756 bp
ATGAGTATAGAGTGGGAAAATAGTCAAGCTAGCAGCAGTATTACCAAATCATTAAATGTTTATGCCCCAAATCTGAAGTATTTTAAATGGATTGGGAATTTGTTGAATTACCAAAATTTGGGGAAATTTATGTGTTTAGAAAAAGCTCATATCTTTCTGAAGCAAAAGGGAGATGAATATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAATCACTTGTTCTGAGCGGGGAGGCTATTAAGGTATTGCTCAGGGAAGATTCCATGCATGCCCCATTAGATGGCACTACTTACTTGGGTGTGCATATTAAGAGCTTGACTGATGACCTAGTCCCTGCAATGGTCTCTCTTCTGAGAGGAGTGCCTAATCTGAAGACTTTGTACATCAATTCTTACCCTTCCTTGCACATTGTTAAACCGAAAGCATGTGGTTTTAAGAGGAAATACTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCTATAGCACTCTCCACCGGTTATCCTACTAATGCCTTGGAGTTAGCAACATATATTCTTGAGCATGCTCAGAAGTTGAAGAAAATGGTCATCTGTTATTTACCTCGCCAGTCCTATATTATAGAGAAGGTAAATAAAAGCAAGAAAATTTCCTCTGCAACTGTTGTCTTTAAGGAAAGGGGAGTGAATGACAATGAAGCAATGGGTGAAAGTTATTATTTTGAGCTATTTCACTTGTATGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

251

Amino Acids

28.75

Weight (kDa)

8.76

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 118, 296, 478
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 1 cut(s) 243
AcsI RAATTY 4 cut(s) 97, 115, 125, 654
AcuI CTGAAG 3 cut(s) 95, 179, 407
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 4 cut(s) 118, 296, 355, 478
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 2 cut(s) 106, 586
AluBI AGCT 5 cut(s) 29, 146, 330, 496, 733
AluI AGCT 5 cut(s) 29, 146, 330, 496, 733
Alw26I GTCTC 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 4 cut(s) 97, 115, 125, 654
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AsiGI ACCGGT 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 725
AsuNHI GCTAGC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 2 cut(s) 30, 344
BfmI CTRYAG 2 cut(s) 217, 510
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmtI GCTAGC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 518, 587
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 296, 355, 478
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 2 cut(s) 467, 616
Bse3DI GCAATG 2 cut(s) 360, 714
BseDI CCNNGG 1 cut(s) 543
BseLI CCNNNNNNNGG 4 cut(s) 118, 296, 355, 478
BseMI GCAATG 2 cut(s) 360, 714
BseMII CTCAG 4 cut(s) 230, 280, 359, 590
BseNI ACTGG 2 cut(s) 467, 616
BseRI GAGGAG 2 cut(s) 387, 515
BseXI GCAGC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 524
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 4 cut(s) 118, 296, 355, 478
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 396
BspACI CCGC 1 cut(s) 243
BspCNI CTCAG 4 cut(s) 231, 279, 360, 589
BspOI GCTAGC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 364
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 360, 714
BsrFI RCCGGY 1 cut(s) 524
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 467, 616
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 31, 285, 573
BstDEI CTNAG 4 cut(s) 239, 266, 368, 576
BstMAI GTCTC 1 cut(s) 364
BstNSI RCATGY 3 cut(s) 287, 444, 575
BstSFI CTRYAG 2 cut(s) 217, 510
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 395
Cac8I GCNNGC 3 cut(s) 31, 285, 573
Cfr10I RCCGGY 1 cut(s) 524
Csp6I GTAC 1 cut(s) 397
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 4 cut(s) 280, 284, 441, 572
CviJI RGCY 6 cut(s) 29, 146, 251, 330, 496, 733
CviKI_1 RGCY 6 cut(s) 29, 146, 251, 330, 496, 733
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 4 cut(s) 239, 266, 368, 576
DraI TTTAAA 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 364
Eco57I CTGAAG 3 cut(s) 95, 179, 407
EcoT14I CCWWGG 1 cut(s) 543
EcoT22I ATGCAT 2 cut(s) 196, 285
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 4 cut(s) 283, 287, 444, 575
FaqI GGGAC 1 cut(s) 332
FatI CATG 4 cut(s) 279, 283, 440, 571
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 2 cut(s) 30, 344
GluI GCNGC 1 cut(s) 34
HapII CCGG 1 cut(s) 525
Hin1II CATG 4 cut(s) 283, 287, 444, 575
HinfI GANTC 1 cut(s) 275
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 725
Hpy188I TCNGA 7 cut(s) 75, 159, 240, 369, 387, 579, 755
Hpy188III TCNNGA 2 cut(s) 479, 566
HpyAV CCTTC 2 cut(s) 423, 628
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4V TGCA 7 cut(s) 194, 210, 283, 319, 353, 421, 665
HpyF3I CTNAG 4 cut(s) 239, 266, 368, 576
Hsp92II CATG 4 cut(s) 283, 287, 444, 575
LpnPI CCDG 7 cut(s) 205, 253, 363, 448, 464, 538, 629
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 2 cut(s) 30, 344
MbiI CCGCTC 1 cut(s) 243
MboII GAAGA 4 cut(s) 284, 356, 400, 598
MluCI AATT 6 cut(s) 97, 106, 115, 125, 403, 654
MnlI CCTC 8 cut(s) 193, 241, 365, 447, 493, 496, 621, 670
Mph1103I ATGCAT 2 cut(s) 196, 285
MseI TTAA 8 cut(s) 53, 84, 225, 255, 324, 429, 450, 678
MslI CAYNNNNRTG 1 cut(s) 744
MspI CCGG 1 cut(s) 525
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 4 cut(s) 283, 287, 444, 575
NsiI ATGCAT 2 cut(s) 196, 285
NspI RCATGY 3 cut(s) 287, 444, 575
PaeI GCATGC 2 cut(s) 287, 575
PfeI GAWTC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 344
PflMI CCANNNNNTGG 3 cut(s) 118, 296, 478
PinAI ACCGGT 1 cut(s) 524
PkrI GCNGC 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 8 cut(s) 53, 84, 225, 255, 324, 429, 450, 678
SatI GCNGC 1 cut(s) 34
SfcI CTRYAG 2 cut(s) 217, 510
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 497, 566
SmoI CTYRAG 2 cut(s) 497, 566
SphI GCATGC 2 cut(s) 287, 575
Sse9I AATT 6 cut(s) 97, 106, 115, 125, 403, 654
SsiI CCGC 1 cut(s) 243
SspMI CTAG 2 cut(s) 30, 344
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 1 cut(s) 670
TasI AATT 6 cut(s) 97, 106, 115, 125, 403, 654
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 8 cut(s) 53, 84, 225, 255, 324, 429, 450, 678
Tru9I TTAA 8 cut(s) 53, 84, 225, 255, 324, 429, 450, 678
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 3 cut(s) 189, 479, 717
Tth111I GACNNNGTC 1 cut(s) 344
Van91I CCANNNNNTGG 3 cut(s) 118, 296, 478
XapI RAATTY 4 cut(s) 97, 115, 125, 654
XceI RCATGY 3 cut(s) 287, 444, 575
XspI CTAG 2 cut(s) 30, 344
Zsp2I ATGCAT 2 cut(s) 196, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.