pycom04g01610

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000430
Physical Location & Seq
Forward (+)
1555712 .. 1556451
740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01610.2

Sequence Viewer

Length: 609 bp
ATGAGATCGGTGAGTCTGTACATATCCAATCCCATTACCAGCGAGTCTTTAGCTATTCCAAAACCTTCTAAGTATAAGAAAATCCGTTTTACAAATTGTTATTCTGGCTTTGGGTTTAGTCCCATCAGTGATGTGTATAAAGTTGTTCTGATTAAGAAGCCAACCGATTGGTCCAAGGAACCGGGGGCGAGGGTTCTCACGGTTGGTTCTACTACTTGGAGAAGCATCGAGGGTTTTGATGAGATTCTCGCGTTATCATATGGTAATTATCACGACGGATTTATTCAATGGTTAGGCCGGCGTATGGGTTCTCTCGGGATATTTGGTTTTGATGTTGAAATTGAGCGTTTCCAGCAGATACCACTACCCCCTTGTCGTTTTGATATGAAGAATGTGCCTAATTATAACCTCGGAGTCTTGAAAGGTTGCCTCTCCGTAACTGTTTACTCGCTTCATAGTATAATTGTTTGGGTGATAAGGGAATTTGGAGGAAGGAAAAGTCTTGTTATTAGAGAATTGTGGAATATTATCAATGGGATAGCATGGGTGGGTGGCGCACGTGTCCACATTCCAAACTTTGTTTCGCTTAAAGATGTTATCGGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

203

Amino Acids

22.82

Weight (kDa)

9.59

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccII CGCG 1 cut(s) 251
AcsI RAATTY 1 cut(s) 482
AcvI CACGTG 1 cut(s) 560
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 3 cut(s) 287, 338, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 482
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 22, 484
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 560
BccI CCATC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 174, 182, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 174, 182, 409
BseLI CCNNNNNNNGG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 182, 298
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 5
BspANI GGCC 1 cut(s) 297
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 297
BsrGI TGTACA 1 cut(s) 18
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 174, 182, 409
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 202, 442
BstAUI TGTACA 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 543
CviJI RGCY 4 cut(s) 53, 108, 160, 297
CviKI_1 RGCY 4 cut(s) 53, 108, 160, 297
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 546
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 542
FauNDI CATATG 1 cut(s) 259
GlaI GCGC 1 cut(s) 556
HaeIII GGCC 1 cut(s) 297
HapII CCGG 2 cut(s) 182, 298
HhaI GCGC 1 cut(s) 557
Hin1II CATG 1 cut(s) 546
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HinfI GANTC 4 cut(s) 13, 44, 244, 414
HpaII CCGG 2 cut(s) 182, 298
HphI GGTGA 2 cut(s) 22, 484
Hpy166II GTNNAC 2 cut(s) 445, 565
Hpy188I TCNGA 3 cut(s) 150, 413, 602
Hpy188III TCNNGA 3 cut(s) 272, 316, 418
Hpy8I GTNNAC 2 cut(s) 445, 565
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 75, 486
HpyCH4III ACNGT 2 cut(s) 202, 442
HpyCH4IV ACGT 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 1 cut(s) 546
HspAI GCGC 1 cut(s) 555
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 52, 90, 195, 311, 365
LweI GCATC 1 cut(s) 234
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 1 cut(s) 400
MluCI AATT 7 cut(s) 94, 265, 339, 400, 462, 482, 515
MlyI GAGTC 3 cut(s) 22, 53, 423
MnlI CCTC 5 cut(s) 183, 223, 419, 440, 482
MroNI GCCGGC 1 cut(s) 297
MseI TTAA 2 cut(s) 153, 588
MspI CCGG 2 cut(s) 182, 298
MspR9I CCNGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 352
NaeI GCCGGC 1 cut(s) 299
NciI CCSGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 259
NdeII GATC 1 cut(s) 5
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 1 cut(s) 546
NlaIV GGNNCC 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 244
PleI GAGTC 3 cut(s) 21, 52, 422
PmaCI CACGTG 1 cut(s) 560
PmlI CACGTG 1 cut(s) 560
PpsI GAGTC 3 cut(s) 21, 52, 422
Ppu21I YACGTR 1 cut(s) 560
PsiI TTATAA 1 cut(s) 405
PspCI CACGTG 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 171
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 153, 588
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 3 cut(s) 22, 53, 423
ScrFI CCNGG 1 cut(s) 183
SetI ASST 5 cut(s) 55, 67, 411, 427, 562
SfaNI GCATC 1 cut(s) 234
SinI GGWCC 1 cut(s) 171
Sse9I AATT 7 cut(s) 94, 265, 339, 400, 462, 482, 515
SspI AATATT 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 202, 442
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 228
TasI AATT 7 cut(s) 94, 265, 339, 400, 462, 482, 515
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 153, 588
Tru9I TTAA 2 cut(s) 153, 588
TscAI CASTG 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 401, 443
TspGWI ACGGA 3 cut(s) 74, 291, 424
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.