Rh4AG175800

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
44086459 .. 44087094
636 bp
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UTR
Exon/CDS
Intron
Rh4AG175800.1

Sequence Viewer

Length: 636 bp
ATGAAATGCTCCTTTTTGTGTGGCTTAGGGTATAGTCCTATCAGTGATGTGTACAAAGTAGTCATGTTTAAGTATCCGAGTGAAGGTCCTAATAATAAAAGGGAGGTGAAGGTCATGACCGTTGGCTCTGGGGTTTGGAGAACCATTGGGGATTTGGGGTTTAATGTTTTGGGGGATGCTGATACAAATGGGGTGTATCTTAATGGATTTCTTCACTGGATTGGTGAGTCTTGCACAGATTCGGTTTCGATATTTGCCTTTGATGTCGAAAATGAGTGCTTCCAAGAGTTGCCACCGCATCCTAGTGCTTTAAAAATCAAAAATATTGAAATCTTCAATGGTTGGCTGTCCATATTTCTTCGCAGAAGAGGTGTCATCAGTGTTTGGGTCATGAAGGATTATGGTGTTGAGGGGTCTTGGACCAAAGAGCTTGAAATTGAAAAGGCAAGTGATTCTCGAATCTTGATGTCTACAAACAAGGGGCCAGTGTTGATGTTACGTGATTGGGAAATTCACACTTATGATCTTGGAACAAAGAGGTATAAATGGGTTCCTGTCAATGGATTACCATTAGTGTTTCAAGAAATTGCACATACTCCAAGCTTTGTTTTGCTGAAAGACATCATCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

211

Amino Acids

23.89

Weight (kDa)

6.43

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 4 - 153 1.1e-13 F-box associated beta propeller domain
FBA_3 PF08268 7 - 145 3.9e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 470
AciI CCGC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 510
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 83, 560
AgsI TTSAA 5 cut(s) 329, 337, 434, 440, 581
AluBI AGCT 2 cut(s) 430, 603
AluI AGCT 2 cut(s) 430, 603
AoxI GGCC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 510
AspS9I GGNCC 3 cut(s) 86, 420, 482
AsuHPI GGTGA 2 cut(s) 118, 236
AvaII GGWCC 2 cut(s) 86, 420
BciVI GTATCC 1 cut(s) 84
BfaI CTAG 1 cut(s) 303
BfuI GTATCC 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 86, 420
BmgT120I GGNCC 3 cut(s) 86, 420, 482
BmiI GGNNCC 2 cut(s) 483, 552
BmsI GCATC 2 cut(s) 166, 307
Bpu10I CCTNAGC 1 cut(s) 25
BsaAI YACGTR 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 560
Bse1I ACTGG 2 cut(s) 221, 485
BseGI GGATG 2 cut(s) 181, 298
BseLI CCNNNNNNNGG 2 cut(s) 83, 560
BseNI ACTGG 2 cut(s) 221, 485
BshFI GGCC 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 83, 560
BsnI GGCC 1 cut(s) 484
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 523
BspACI CCGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 484
BspHI TCATGA 2 cut(s) 114, 390
BspLI GGNNCC 2 cut(s) 483, 552
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 2 cut(s) 221, 485
BssMI GATC 1 cut(s) 523
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 500
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 181, 298
BstKTI GATC 1 cut(s) 526
BstMBI GATC 1 cut(s) 523
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 484
BtsCI GGATG 2 cut(s) 181, 298
BtsIMutI CAGTG 4 cut(s) 49, 214, 385, 492
CciI TCATGA 2 cut(s) 114, 390
Cfr13I GGNCC 3 cut(s) 86, 420, 482
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 64, 115, 391
CviJI RGCY 6 cut(s) 24, 126, 346, 430, 484, 603
CviKI_1 RGCY 6 cut(s) 24, 126, 346, 430, 484, 603
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 25
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DraI TTTAAA 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 86, 420
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 3 cut(s) 67, 118, 394
FaiI YATR 9 cut(s) 33, 65, 116, 353, 392, 402, 522, 543, 594
FatI CATG 3 cut(s) 63, 114, 390
FblI GTMKAC 1 cut(s) 470
FokI GGATG 2 cut(s) 188, 285
FspBI CTAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 484
Hin1II CATG 3 cut(s) 67, 118, 394
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 4 cut(s) 227, 239, 452, 459
HphI GGTGA 2 cut(s) 118, 236
Hpy166II GTNNAC 2 cut(s) 52, 471
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 5 cut(s) 115, 391, 456, 463, 581
Hpy8I GTNNAC 2 cut(s) 52, 471
HpyAV CCTTC 3 cut(s) 77, 103, 388
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 2 cut(s) 234, 590
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 3 cut(s) 67, 118, 394
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 114, 202, 498, 567
LweI GCATC 2 cut(s) 166, 307
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 495
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 4 cut(s) 203, 325, 350, 378
MluCI AATT 3 cut(s) 435, 510, 585
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 4 cut(s) 97, 362, 403, 531
MseI TTAA 4 cut(s) 69, 162, 201, 311
MslI CAYNNNNRTG 2 cut(s) 303, 519
NdeII GATC 1 cut(s) 523
NlaIII CATG 3 cut(s) 67, 118, 394
NlaIV GGNNCC 2 cut(s) 483, 552
PagI TCATGA 2 cut(s) 114, 390
PfeI GAWTC 3 cut(s) 239, 452, 459
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 500
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 483, 552
PspPI GGNCC 3 cut(s) 86, 420, 482
PspPPI RGGWCCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 303, 519
SaqAI TTAA 4 cut(s) 69, 162, 201, 311
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 3 cut(s) 86, 420, 482
SchI GAGTC 1 cut(s) 236
SetI ASST 8 cut(s) 88, 108, 114, 373, 432, 502, 542, 605
SfaNI GCATC 2 cut(s) 166, 307
SinI GGWCC 2 cut(s) 86, 420
SmiMI CAYNNNNRTG 2 cut(s) 303, 519
Sse9I AATT 3 cut(s) 435, 510, 585
SsiI CCGC 1 cut(s) 296
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 502
TaqI TCGA 3 cut(s) 248, 267, 457
TasI AATT 3 cut(s) 435, 510, 585
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 3 cut(s) 239, 452, 459
Tru1I TTAA 4 cut(s) 69, 162, 201, 311
Tru9I TTAA 4 cut(s) 69, 162, 201, 311
TscAI CASTG 4 cut(s) 49, 221, 385, 492
TspDTI ATGAA 2 cut(s) 17, 407
TspRI CASTG 4 cut(s) 49, 221, 385, 492
VpaK11BI GGWCC 2 cut(s) 86, 420
XapI RAATTY 1 cut(s) 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.