Prupe.1G167800_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Forward (+)
13657276 .. 13658394
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G167800.1

Sequence Viewer

Length: 978 bp
ATGAAGAGAATTATACAATGCTTCCGCCACCCAGCAACCAACAGAAGCAGAACCCCAAAACAAGAAGACGACGATGAAGAGGAAGAGCATGATCAGAGACCCTACATTCTGCAATTGTCAGACCACATAATACTGGAGATTTTCTGCAAAATCCCAACAAAAACTCTCATCCAATGCAAGCGTGTGTGCAAGTCTTGGCGGCGTTGTCTCTCAGACCCTGAATTCACCAGAGAACTATTTTCACGAACACCCGCTTGCCTCTTGGTTACTGGCTTCCGCTGGCAGTGGGGCCACTTCTTGGTCGACCTCGACGGGACCTGGAACCCAAACGTCGTCGCCTTGAAGCTTTCCAGTGAAATAAGTCTCCGAACTAGAACTACCATGGTAGGCTCGTGCAATGGCTTCCTCTTTCGGATAGTGCCTAAACAAGTAATGGTTTTGACTGTTGGCTCTGGGATTTGGAGAAACATTGGGCACCCTGCCTACTCTTTTAGTGGCATAACTCCTTGTCATGGGATTTATCACAAAGGTTTTCTTCATTGGATTGGTCGCACTTGTGGGGACAGCTCTCGGCGTTTGGTATGTGCCTTTCACGTTGAAACAGAGCAGTTCCAAGAGTTACCACTACCGCCTCCTTTTTATGATCTGGATAAAACTTATTTTAAGCTCGGAGTATTAAATGGTTGGCTCTCTGTAATTCTTAACTTGAATGGCGATATCAGTGTTTGGGTGATGAAGGAATCTTGGACTAAAGAGCATGAGTTTAAAGACCCAGTTGGTTCTTTTGGCACTTCAATATTGAAATTTACTGAGGAAGGGCAAGTCTTGGGGTTAAATTATGATGATCATTCAATGCAGGCTTACACTCTCGCAAGAACTGGCCTTGTGAGGGTTGAGGTTGATGGACTACCTTTAACGATTTCGGAGGCATGGGACCTTGTTCTGAGCTTTGTTTCGCTTGAGGATAGATCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

326

Amino Acids

37.34

Weight (kDa)

6.6

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 474
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 303
AciI CCGC 5 cut(s) 25, 199, 252, 277, 629
AcsI RAATTY 2 cut(s) 221, 803
AfiI CCNNNNNNNGG 3 cut(s) 298, 512, 889
AgsI TTSAA 6 cut(s) 343, 599, 709, 795, 802, 852
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 4 cut(s) 346, 567, 667, 948
AluI AGCT 4 cut(s) 346, 567, 667, 948
Alw26I GTCTC 3 cut(s) 91, 212, 368
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 289, 880
ApoI RAATTY 2 cut(s) 221, 803
AspS9I GGNCC 3 cut(s) 289, 315, 934
AsuHPI GGTGA 3 cut(s) 217, 742, 963
AvaII GGWCC 2 cut(s) 315, 934
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 474
BauI CACGAG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 72
BccI CCATC 1 cut(s) 896
BciT130I CCWGG 1 cut(s) 319
BclI TGATCA 2 cut(s) 91, 844
BcoDI GTCTC 3 cut(s) 91, 212, 368
BfaI CTAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 2 cut(s) 315, 934
BmgT120I GGNCC 3 cut(s) 289, 315, 934
BmiI GGNNCC 5 cut(s) 290, 316, 323, 476, 935
BmrFI CCNGG 1 cut(s) 319
BmrI ACTGGG 1 cut(s) 767
BmuI ACTGGG 1 cut(s) 767
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 512, 889
Bse1I ACTGG 5 cut(s) 138, 274, 351, 773, 883
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 298, 512, 889
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 3 cut(s) 225, 801, 935
BseNI ACTGG 5 cut(s) 138, 274, 351, 773, 883
BseSI GKGCMC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 291, 882
BshNI GGYRCC 1 cut(s) 474
BslFI GGGAC 3 cut(s) 328, 575, 947
BslI CCNNNNNNNGG 3 cut(s) 298, 512, 889
BsmAI GTCTC 3 cut(s) 91, 212, 368
BsmFI GGGAC 3 cut(s) 328, 575, 947
BsnI GGCC 2 cut(s) 291, 882
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 4 cut(s) 91, 643, 844, 968
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 5 cut(s) 25, 199, 252, 277, 629
BspANI GGCC 2 cut(s) 291, 882
BspCNI CTCAG 3 cut(s) 224, 802, 936
BspLI GGNNCC 5 cut(s) 290, 316, 323, 476, 935
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 5 cut(s) 138, 274, 351, 773, 883
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 4 cut(s) 91, 643, 844, 968
BssSI CACGAG 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 72, 78
BstC8I GCNNGC 4 cut(s) 179, 256, 281, 858
BstDEI CTNAG 3 cut(s) 211, 810, 944
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 4 cut(s) 94, 646, 847, 971
BstMAI GTCTC 3 cut(s) 91, 212, 368
BstMBI GATC 4 cut(s) 91, 643, 844, 968
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 72
BsuRI GGCC 2 cut(s) 291, 882
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 3 cut(s) 290, 358, 727
Cac8I GCNNGC 4 cut(s) 179, 256, 281, 858
CaiI CAGNNNCTG 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 289, 315, 934
CviAII CATG 5 cut(s) 89, 382, 512, 758, 930
DdeI CTNAG 3 cut(s) 211, 810, 944
DpnI GATC 4 cut(s) 93, 645, 846, 970
DpnII GATC 4 cut(s) 91, 643, 844, 968
DraI TTTAAA 1 cut(s) 766
Eam1104I CTCTTC 2 cut(s) 72, 78
EarI CTCTTC 2 cut(s) 72, 78
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 91
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 315, 934
EcoO109I RGGNCCY 2 cut(s) 315, 934
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 317
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 5 cut(s) 92, 385, 515, 761, 933
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 3 cut(s) 328, 575, 947
FatI CATG 5 cut(s) 88, 381, 511, 757, 929
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 2 cut(s) 91, 844
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 2 cut(s) 291, 882
Hin1II CATG 5 cut(s) 92, 385, 515, 761, 933
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 1 cut(s) 740
HphI GGTGA 3 cut(s) 217, 742, 963
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 8 cut(s) 96, 121, 214, 368, 414, 671, 925, 945
Hpy188III TCNNGA 2 cut(s) 243, 647
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 4 cut(s) 74, 314, 335, 338
HpyAV CCTTC 2 cut(s) 730, 809
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 2 cut(s) 330, 594
HpyCH4V TGCA 6 cut(s) 112, 147, 177, 189, 396, 856
HpyF3I CTNAG 3 cut(s) 211, 810, 944
HpySE526I ACGT 2 cut(s) 330, 594
Hsp92II CATG 5 cut(s) 92, 385, 515, 761, 933
Ksp22I TGATCA 2 cut(s) 91, 844
Kzo9I GATC 4 cut(s) 91, 643, 844, 968
LguI GCTCTTC 1 cut(s) 78
MaeI CTAG 1 cut(s) 372
MaeII ACGT 2 cut(s) 330, 594
MaeIII GTNAC 2 cut(s) 265, 618
MalI GATC 4 cut(s) 93, 645, 846, 970
MboI GATC 4 cut(s) 91, 643, 844, 968
MboII GAAGA 5 cut(s) 16, 77, 89, 95, 527
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 6 cut(s) 9, 113, 221, 696, 803, 835
MseI TTAA 6 cut(s) 663, 677, 702, 765, 833, 914
MspA1I CMGCKG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 381
NdeII GATC 4 cut(s) 91, 643, 844, 968
NlaIII CATG 5 cut(s) 92, 385, 515, 761, 933
NlaIV GGNNCC 5 cut(s) 290, 316, 323, 476, 935
NmeAIII GCCGAG 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 1 cut(s) 201
PpuMI RGGWCCY 2 cut(s) 315, 934
Psp5II RGGWCCY 2 cut(s) 315, 934
Psp6I CCWGG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 5 cut(s) 290, 316, 323, 476, 935
PspPI GGNCC 3 cut(s) 289, 315, 934
PspPPI RGGWCCY 2 cut(s) 315, 934
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PstNI CAGNNNCTG 1 cut(s) 218
SalI GTCGAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 6 cut(s) 663, 677, 702, 765, 833, 914
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 4 cut(s) 91, 643, 844, 968
Sau96I GGNCC 3 cut(s) 289, 315, 934
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 477
SinI GGWCC 2 cut(s) 315, 934
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
Sse9I AATT 6 cut(s) 9, 113, 221, 696, 803, 835
SsiI CCGC 5 cut(s) 25, 199, 252, 277, 629
SspI AATATT 1 cut(s) 798
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 2 cut(s) 333, 597
TaqI TCGA 2 cut(s) 303, 309
TasI AATT 6 cut(s) 9, 113, 221, 696, 803, 835
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 6 cut(s) 663, 677, 702, 765, 833, 914
Tru9I TTAA 6 cut(s) 663, 677, 702, 765, 833, 914
TscAI CASTG 3 cut(s) 290, 358, 727
TspDTI ATGAA 4 cut(s) 17, 90, 527, 749
TspRI CASTG 3 cut(s) 290, 358, 727
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 315, 934
XapI RAATTY 2 cut(s) 221, 803
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.