FvH4_6g33904

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000430
Physical Location & Seq
Reverse (-)
26846336 .. 26846923
588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33904.t1

Sequence Viewer

Length: 588 bp
ATGAAGAGGCAGAAACTAACCAGAGATGAAGAAGTAGATTACGAAAGAGATGATGAGAAACCCTGCATCATTCTGCAATTGCCAGACCACATAATTTTAGAGATCTTTTGTAGAATCCCAATAAACACTGTTATCCAGTGCAAATACGTGTGCAAGTCTTGGCGTCGTTCCTTCTCAGAGCCCGAGTTCACAAAATCCCTATTTGCACGAACTCAGGCGTGCTTGTTTCTCGAAGATCGTACTACCAAAAGCCGGAGCGGAAACACCAAACGACGTCGTCGTGGTATGCCCCCGAATAAGCACGTCTTGGCCAACTTGGAAAGTGTTTTGAGCCCAAACAACATGGTCTTGAAGCTTTCAGATCCTAATGCATTATACAACAGGCTTCATTCAAATTTCAGAGGTATCATGGGTTCCTGCAATGGCTTCCTCTGCTTATTCCGCCATAATGATAAAACTGATGCTTTCATCTTTAACATAGCAAACCCCATTACTCGTGAGTGTATACCTCTTCCGGTCAATGAAGAAATAAGTCGTCCACTACCTCACTTTGGGTTTGGGTTTAGTCCCATGAGTGACGTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

196

Amino Acids

22.7

Weight (kDa)

9.08

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 65 3.7e-09 F-box domain
F-box-like PF12937 24 - 68 2.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 277, 582
AccBSI CCGCTC 1 cut(s) 258
AccI GTMKAC 1 cut(s) 505
AciI CCGC 2 cut(s) 258, 442
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 394
AcyI GRCGYC 3 cut(s) 163, 274, 579
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 252, 551
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 2 cut(s) 352, 393
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
AlwI GGATC 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 311
BanII GRGCYC 2 cut(s) 183, 335
BauI CACGAG 1 cut(s) 495
BglII AGATCT 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 182
BmgBI CACGTC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 415
BmsI GCATC 2 cut(s) 75, 451
BsaAI YACGTR 1 cut(s) 148
BsaHI GRCGYC 3 cut(s) 163, 274, 579
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 551
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 252, 551
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 189, 227
BseNI ACTGG 1 cut(s) 136
BshFI GGCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 253, 515
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 2 cut(s) 252, 551
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 183, 335
Bsp143I GATC 3 cut(s) 102, 235, 361
BspACI CCGC 2 cut(s) 258, 442
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 188, 226
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 1 cut(s) 136
BssMI GATC 3 cut(s) 102, 235, 361
BssNAI GTATAC 1 cut(s) 506
BssNI GRCGYC 3 cut(s) 163, 274, 579
BssSI CACGAG 1 cut(s) 495
Bst1107I GTATAC 1 cut(s) 506
Bst2BI CACGAG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 3 cut(s) 163, 274, 579
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 175, 213
BstKTI GATC 3 cut(s) 105, 238, 364
BstMBI GATC 3 cut(s) 102, 235, 361
BstMWI GCNNNNNNNGC 2 cut(s) 432, 441
BstX2I RGATCY 2 cut(s) 102, 361
BstYI RGATCY 2 cut(s) 102, 361
BstZ17I GTATAC 1 cut(s) 506
BsuRI GGCC 1 cut(s) 311
BtrI CACGTC 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 126, 143
Cac8I GCNNGC 1 cut(s) 220
CseI GACGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 343, 409, 571
CviJI RGCY 7 cut(s) 181, 252, 311, 333, 355, 385, 426
CviKI_1 RGCY 7 cut(s) 181, 252, 311, 333, 355, 385, 426
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 175, 213
DpnI GATC 3 cut(s) 104, 237, 363
DpnII GATC 3 cut(s) 102, 235, 361
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
EciI GGCGGA 1 cut(s) 431
Eco24I GRGCYC 2 cut(s) 183, 335
Eco88I CYCGRG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 183, 335
FaeI CATG 3 cut(s) 346, 412, 574
FaiI YATR 9 cut(s) 92, 287, 344, 376, 410, 447, 479, 506, 572
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 552
FatI CATG 3 cut(s) 342, 408, 570
FblI GTMKAC 1 cut(s) 505
FriOI GRGCYC 2 cut(s) 183, 335
HaeIII GGCC 1 cut(s) 311
HapII CCGG 2 cut(s) 253, 515
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 3 cut(s) 163, 274, 579
Hin1II CATG 3 cut(s) 346, 412, 574
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 1 cut(s) 114
HpaII CCGG 2 cut(s) 253, 515
Hpy166II GTNNAC 3 cut(s) 189, 506, 539
Hpy188I TCNGA 3 cut(s) 178, 361, 401
Hpy188III TCNNGA 3 cut(s) 230, 349, 497
Hpy8I GTNNAC 3 cut(s) 189, 506, 539
Hpy99I CGWCG 4 cut(s) 168, 276, 279, 282
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 4 cut(s) 147, 274, 303, 579
HpyCH4V TGCA 7 cut(s) 66, 76, 141, 153, 206, 371, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 441
HpyF3I CTNAG 2 cut(s) 175, 213
HpySE526I ACGT 4 cut(s) 147, 274, 303, 579
Hsp92I GRCGYC 3 cut(s) 163, 274, 579
Hsp92II CATG 3 cut(s) 346, 412, 574
Kzo9I GATC 3 cut(s) 102, 235, 361
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 9 cut(s) 34, 76, 96, 149, 200, 266, 367, 430, 528
LweI GCATC 2 cut(s) 75, 451
MaeII ACGT 4 cut(s) 147, 274, 303, 579
MaeIII GTNAC 1 cut(s) 575
MalI GATC 3 cut(s) 104, 237, 363
MbiI CCGCTC 1 cut(s) 258
MboI GATC 3 cut(s) 102, 235, 361
MboII GAAGA 5 cut(s) 16, 41, 245, 503, 536
MfeI CAATTG 1 cut(s) 77
MflI RGATCY 2 cut(s) 102, 361
MhlI GDGCHC 2 cut(s) 183, 335
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 3 cut(s) 77, 93, 394
MluNI TGGCCA 1 cut(s) 311
MnlI CCTC 4 cut(s) 395, 440, 519, 555
Mox20I TGGCCA 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 373
MscI TGGCCA 1 cut(s) 311
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 2 cut(s) 253, 515
MunI CAATTG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 432, 441
NdeII GATC 3 cut(s) 102, 235, 361
NlaIII CATG 3 cut(s) 346, 412, 574
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PfeI GAWTC 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 276
Ppu21I YACGTR 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 415
PsrI GAACNNNNNNTAC 2 cut(s) 397, 429
PsuI RGATCY 2 cut(s) 102, 361
PsyI GACNNNGTC 1 cut(s) 276
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 3 cut(s) 102, 235, 361
SduI GDGCHC 2 cut(s) 183, 335
SetI ASST 8 cut(s) 150, 277, 306, 357, 406, 511, 547, 582
SfaNI GCATC 2 cut(s) 75, 451
Sse9I AATT 3 cut(s) 77, 93, 394
SsiI CCGC 2 cut(s) 258, 442
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 4 cut(s) 150, 277, 306, 582
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 77, 93, 394
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 2 cut(s) 133, 143
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 5 cut(s) 17, 42, 377, 457, 537
TspRI CASTG 2 cut(s) 133, 143
Tth111I GACNNNGTC 1 cut(s) 276
XapI RAATTY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 505
ZraI GACGTC 2 cut(s) 275, 580
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.