Rh1CG356400

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000430
Physical Location & Seq
Forward (+)
63092110 .. 63110744
18635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG356400.1

Sequence Viewer

Length: 999 bp
ATGGTTTTGACAGTTGGCTCTGGGATTTGGAGAAGCATTGGAAAAGTATCTGTAAATGCCGAGATTACCAGATATGGGGTCTTTCATAATGGATTTCTTTATTGGATTTACAGCTGCAGAAAACGTTCTCGTTTTCGTTTCATACGTGCCTTTGATGTTGAAAGTGAGCGTTTCCAGAATTTACCAATGCCTCCTTCTTCTGTCGACCCAATTACAACTATTGCTTACCTAGGAGTGTTAAATGGTTCACTATCTATAAGTTGTCGCCCATCCGAAACTTTCGAAGTTTGGCTAATGAAGGAATATGGGGGCAAGAAGTTTTGGATGAAAGAGCTTGAAATTCGTGACACAATTCACCAGCCAATAACGGTAAACGGTGACACATGCTCCAGTCGTCCTCTATACATGCATTATTTTGAAGTTCTGAAACTTATAAAGGGGAAAAACTCTCCGAAAAAAGCTTTATTGTTAGACGACTCTAGATTGAGCCTTTATACCCCTGCAACAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATGCCTTGCATGGCTAGGAAGGATGTGGCAGGTGTCCATATTCCAAGCTTTGTTTCACCTAAAAACATTATCAGGGATTACATCTCCAAGCATCCAGAGGAAGTAGCTGAAACATCTGATATAAAAATACCAGCATGGACAACTAGTGTTGTGGGATGGGGAGAGAACGATGAGAGCGAGGTAGTTGAGATTCCAAGAGGCCAGCCTACCCCATGCCTGCCACTCCCAAAGGACCTTAAACATGTAAGTGTAGCTACAGCTTCGACGCTACTGGATATGATTAGTGGCTTGAGTGCCCTTCTATTGCATAAGTGCATGGTGGGAAAAGATGAGATCAAAAGGCTTAGGAAGGAGAATGAAGAGCTCCGTGCAAGTGTAAAGCTGCTTTCGGGATGGCCAGATGATGGTGAAGGTGATTTCGTATGTCATGTTCGTGAGCCACAACCTGAGGAGGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

332

Amino Acids

37.51

Weight (kDa)

7.61

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 112 1.4e-10 F-box associated beta propeller domain
FBA_1 PF07734 6 - 117 6.9e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AarI CACCTGC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 941
AccI GTMKAC 1 cut(s) 204
AclI AACGTT 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 932
AcsI RAATTY 2 cut(s) 178, 339
AfiI CCNNNNNNNGG 4 cut(s) 75, 519, 520, 941
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 4 cut(s) 161, 338, 419, 527
AhlI ACTAGT 1 cut(s) 680
AjuI GAANNNNNNNTTGG 4 cut(s) 178, 210, 574, 606
AluBI AGCT 9 cut(s) 114, 334, 461, 585, 644, 791, 797, 901, 919
AluI AGCT 9 cut(s) 114, 334, 461, 585, 644, 791, 797, 901, 919
Alw21I GWGCWC 1 cut(s) 903
AoxI GGCC 2 cut(s) 736, 932
ApeKI GCWGC 2 cut(s) 114, 919
ApoI RAATTY 2 cut(s) 178, 339
Asp700I GAANNNNTTC 1 cut(s) 124
AspA2I CCTAGG 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 510, 769
AsuHPI GGTGA 5 cut(s) 347, 389, 585, 956, 962
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 2 cut(s) 510, 769
AvrII CCTAGG 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 984
BaeGI GKGCMC 1 cut(s) 835
BalI TGGCCA 1 cut(s) 934
BanII GRGCYC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 101, 906
BccI CCATC 5 cut(s) 277, 527, 687, 924, 935
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 5 cut(s) 230, 480, 552, 681, 997
BfmI CTRYAG 2 cut(s) 115, 792
BfuAI ACCTGC 1 cut(s) 557
BisI GCNGC 2 cut(s) 115, 920
BlnI CCTAGG 1 cut(s) 229
BlsI GCNGC 2 cut(s) 116, 921
Bme18I GGWCC 2 cut(s) 510, 769
BmgT120I GGNCC 2 cut(s) 510, 769
BmiI GGNNCC 1 cut(s) 512
BmsI GCATC 2 cut(s) 528, 637
BpmI CTGGAG 1 cut(s) 373
Bpu10I CCTNAGC 1 cut(s) 881
Bpu14I TTCGAA 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 847
BsaAI YACGTR 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 519, 520, 941
Bse1I ACTGG 2 cut(s) 390, 813
Bse21I CCTNAGG 1 cut(s) 984
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 7 cut(s) 269, 330, 543, 565, 628, 698, 935
BseLI CCNNNNNNNGG 4 cut(s) 75, 519, 520, 941
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 2 cut(s) 390, 813
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 2 cut(s) 101, 906
BshFI GGCC 2 cut(s) 738, 934
BsiHKAI GWGCWC 1 cut(s) 903
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 4 cut(s) 75, 519, 520, 941
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 2 cut(s) 738, 934
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 835, 903
Bsp143I GATC 1 cut(s) 870
BspANI GGCC 2 cut(s) 738, 934
BspCNI CTCAG 1 cut(s) 976
BspLI GGNNCC 1 cut(s) 512
BspMAI CTGCAG 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 557
BspQI GCTCTTC 1 cut(s) 891
BspT104I TTCGAA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 390, 813
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 13, 370, 377
Bst6I CTCTTC 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 740, 755
BstDEI CTNAG 2 cut(s) 881, 984
BstF5I GGATG 7 cut(s) 269, 330, 543, 565, 628, 698, 935
BstKTI GATC 1 cut(s) 873
BstMBI GATC 1 cut(s) 870
BstNSI RCATGY 3 cut(s) 387, 409, 782
BstSFI CTRYAG 2 cut(s) 115, 792
BstSLI GKGCMC 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 101, 906
Bsu36I CCTNAGG 1 cut(s) 984
BsuRI GGCC 2 cut(s) 738, 934
BtsCI GGATG 7 cut(s) 269, 330, 543, 565, 628, 698, 935
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 2 cut(s) 740, 755
Cfr13I GGNCC 2 cut(s) 510, 769
CseI GACGC 1 cut(s) 811
CviAII CATG 8 cut(s) 384, 406, 547, 672, 750, 779, 853, 965
DdeI CTNAG 2 cut(s) 881, 984
DpnI GATC 1 cut(s) 872
DpnII GATC 1 cut(s) 870
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 903
Eco47I GGWCC 2 cut(s) 510, 769
Eco53kI GAGCTC 1 cut(s) 901
Eco81I CCTNAGG 1 cut(s) 984
EcoICRI GAGCTC 1 cut(s) 901
EcoO109I RGGNCCY 2 cut(s) 510, 769
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 8 cut(s) 387, 409, 550, 675, 753, 782, 856, 968
FaqI GGGAC 1 cut(s) 496
FatI CATG 8 cut(s) 383, 405, 546, 671, 749, 778, 852, 964
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 115, 920
FokI GGATG 7 cut(s) 256, 337, 550, 572, 615, 705, 942
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 2 cut(s) 115, 920
FspBI CTAG 5 cut(s) 230, 480, 552, 681, 997
GluI GCNGC 2 cut(s) 115, 920
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 2 cut(s) 738, 934
HgaI GACGC 1 cut(s) 811
Hin1II CATG 8 cut(s) 387, 409, 550, 675, 753, 782, 856, 968
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 2 cut(s) 459, 583
HinfI GANTC 2 cut(s) 476, 727
HphI GGTGA 5 cut(s) 347, 389, 585, 956, 962
Hpy166II GTNNAC 3 cut(s) 205, 248, 373
Hpy188I TCNGA 4 cut(s) 274, 426, 453, 655
Hpy188III TCNNGA 6 cut(s) 175, 344, 480, 632, 927, 971
Hpy8I GTNNAC 3 cut(s) 205, 248, 373
Hpy99I CGWCG 1 cut(s) 805
HpyAV CCTTC 6 cut(s) 204, 292, 550, 845, 880, 941
HpyCH4III ACNGT 3 cut(s) 13, 370, 377
HpyCH4IV ACGT 2 cut(s) 124, 145
HpyCH4V TGCA 7 cut(s) 117, 409, 503, 546, 844, 852, 908
HpyF3I CTNAG 2 cut(s) 881, 984
HpySE526I ACGT 2 cut(s) 124, 145
Hsp92II CATG 8 cut(s) 387, 409, 550, 675, 753, 782, 856, 968
Kzo9I GATC 1 cut(s) 870
LguI GCTCTTC 1 cut(s) 891
LmnI GCTCC 2 cut(s) 392, 906
Lsp1109I GCAGC 2 cut(s) 101, 906
LweI GCATC 2 cut(s) 528, 637
MaeI CTAG 5 cut(s) 230, 480, 552, 681, 997
MaeII ACGT 2 cut(s) 124, 145
MaeIII GTNAC 2 cut(s) 344, 377
MalI GATC 1 cut(s) 872
MboI GATC 1 cut(s) 870
MboII GAAGA 2 cut(s) 189, 908
MhlI GDGCHC 2 cut(s) 835, 903
MlsI TGGCCA 1 cut(s) 934
MluCI AATT 5 cut(s) 178, 210, 339, 351, 528
MluNI TGGCCA 1 cut(s) 934
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 8 cut(s) 201, 408, 513, 628, 709, 728, 979, 982
Mox20I TGGCCA 1 cut(s) 934
Mph1103I ATGCAT 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 124
MscI TGGCCA 1 cut(s) 934
MseI TTAA 2 cut(s) 239, 774
MslI CAYNNNNRTG 2 cut(s) 783, 969
Msp20I TGGCCA 1 cut(s) 934
MspA1I CMGCKG 1 cut(s) 114
NdeII GATC 1 cut(s) 870
NlaIII CATG 8 cut(s) 387, 409, 550, 675, 753, 782, 856, 968
NlaIV GGNNCC 1 cut(s) 512
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 344, 377
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 3 cut(s) 387, 409, 782
NspV TTCGAA 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 557
PciI ACATGT 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 711
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 727
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 2 cut(s) 116, 921
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 146
PpuMI RGGWCCY 2 cut(s) 510, 769
PscI ACATGT 1 cut(s) 778
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 903
Psp1406I AACGTT 1 cut(s) 124
Psp5II RGGWCCY 2 cut(s) 510, 769
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 2 cut(s) 510, 769
PspPPI RGGWCCY 2 cut(s) 510, 769
PsrI GAACNNNNNNTAC 2 cut(s) 951, 983
PstI CTGCAG 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 114
RseI CAYNNNNRTG 2 cut(s) 783, 969
SacI GAGCTC 1 cut(s) 903
SalI GTCGAC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 891
SaqAI TTAA 2 cut(s) 239, 774
SatI GCNGC 2 cut(s) 115, 920
Sau3AI GATC 1 cut(s) 870
Sau96I GGNCC 2 cut(s) 510, 769
SchI GAGTC 1 cut(s) 470
SduI GDGCHC 2 cut(s) 835, 903
SfaNI GCATC 2 cut(s) 528, 637
SfcI CTRYAG 2 cut(s) 115, 792
SfuI TTCGAA 1 cut(s) 282
SinI GGWCC 2 cut(s) 510, 769
SmiMI CAYNNNNRTG 2 cut(s) 783, 969
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
SpeI ACTAGT 1 cut(s) 680
Sse9I AATT 5 cut(s) 178, 210, 339, 351, 528
SspMI CTAG 5 cut(s) 230, 480, 552, 681, 997
SstI GAGCTC 1 cut(s) 903
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 3 cut(s) 13, 370, 377
TaiI ACGT 2 cut(s) 127, 148
TaqI TCGA 3 cut(s) 204, 282, 800
TasI AATT 5 cut(s) 178, 210, 339, 351, 528
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 2 cut(s) 239, 774
Tru9I TTAA 2 cut(s) 239, 774
TseFI GTSAC 2 cut(s) 344, 377
TseI GCWGC 2 cut(s) 114, 919
Tsp45I GTSAC 2 cut(s) 344, 377
TspDTI ATGAA 5 cut(s) 74, 130, 311, 341, 909
TspGWI ACGGA 1 cut(s) 893
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 2 cut(s) 510, 769
XapI RAATTY 2 cut(s) 178, 339
XbaI TCTAGA 1 cut(s) 479
XceI RCATGY 3 cut(s) 387, 409, 782
XmaJI CCTAGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 5 cut(s) 230, 480, 552, 681, 997
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.