Rh1BG342800

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000430
Physical Location & Seq
Forward (+)
47603929 .. 47605315
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG342800.1

Sequence Viewer

Length: 993 bp
ATGGTTTTGACAGTTGGCTCTGGGATTTGGAGATGCATCGGAAAAGTATCTAATACTGTCAGGAATACCAGACGTGGGGTCTTTCATAATGGATTTCTTCACTGGATTTGGCACTGTCAACGTTCTCGTTTTCTTTTCATACGTGCCTTTGATGTCGAAAGTGAGCGTTTCAAGAATTTACCAATGCCTCGTTCTGTCGACCCAATTGTAACCAGTAATCACCTAGGAGTGTTAAATGGTTCACTTTCTATAATTTGTCGCTCATCCGATACTTTCGAAGTTTGGCTAATGAAGGAATATGGGGGCAAGAAGTTTTGGACCAGAGAGCTTGAAATTCGTGACACAATTCACGACCCAGTAACAATAGACGATGACACATGTTCGAGGCGTCCTCTATCCATGCATAATATTGAAGTTCTGAAGCTTATAAAGGTGAAAAAAGGTCCGAAAAAAGCTTTAGTATTAGACGACTTTAGATTGAGCCTTTATACCCCTGCAACAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATGCCTAGCATGGCTTGGAAGGATGTGGCAGGTGTCCATATTCCAAGCTTTGTTTCACCTAAAGACATTATCAGGGATTACATCTCCAAGCATCCAGAGGAAGTAGCTGAAACATCTGATATAAAAATACCGGCATGGACAACTAGTGTTGTGGGATGGGGAGAGAACGATGAAAGCGAGGTAGTTGAGATTCCAAGAGGCCAGCCTACCCCATGCCTGCCACTCCCAAAGGACCTTAAACATGTAAGTGTAGCTACAGCTTCGACGCTACTGGATATGATTAGTGGCTTGAATGCCCTTCTATTGCATAAGTGCATGGTGGGAAAAGATGAGATCAAAAGGCTTAGGAAGGAGAATGAAGAGCTCCGTGCAAGTGTAAAGCTGCTTTCGGGAAGGCCAGATGATGATGAAGGTGATTTCGAATGTCATGTTCGTGAGCCACAACCTGAGGAGGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

330

Amino Acids

37.51

Weight (kDa)

6.84

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 180 6.9e-11 F-box associated beta propeller domain
FBA_1 PF07734 6 - 113 1.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 551
AccI GTMKAC 1 cut(s) 198
AclI AACGTT 1 cut(s) 121
AcsI RAATTY 2 cut(s) 175, 333
AcuI CTGAAG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 388
AfiI CCNNNNNNNGG 3 cut(s) 75, 513, 514
AflIII ACRYGT 2 cut(s) 377, 772
AgsI TTSAA 5 cut(s) 172, 332, 413, 521, 823
AhdI GACNNNNNGTC 1 cut(s) 77
AhlI ACTAGT 1 cut(s) 674
AjiI CACGTC 1 cut(s) 74
AjuI GAANNNNNNNTTGG 4 cut(s) 175, 207, 568, 600
AluBI AGCT 9 cut(s) 328, 424, 455, 579, 638, 785, 791, 895, 913
AluI AGCT 9 cut(s) 328, 424, 455, 579, 638, 785, 791, 895, 913
Alw21I GWGCWC 1 cut(s) 897
AoxI GGCC 2 cut(s) 730, 926
ApeKI GCWGC 1 cut(s) 913
ApoI RAATTY 2 cut(s) 175, 333
AspA2I CCTAGG 1 cut(s) 223
AspS9I GGNCC 4 cut(s) 318, 443, 504, 763
AsuHPI GGTGA 4 cut(s) 212, 445, 579, 956
AsuII TTCGAA 2 cut(s) 276, 951
AvaII GGWCC 4 cut(s) 318, 443, 504, 763
AvrII CCTAGG 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 978
BanII GRGCYC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 1 cut(s) 900
BccI CCATC 2 cut(s) 521, 681
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 4 cut(s) 224, 537, 675, 991
BfmI CTRYAG 1 cut(s) 786
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 1 cut(s) 914
BlnI CCTAGG 1 cut(s) 223
BlsI GCNGC 1 cut(s) 915
Bme18I GGWCC 4 cut(s) 318, 443, 504, 763
BmeRI GACNNNNNGTC 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 4 cut(s) 318, 443, 504, 763
BmiI GGNNCC 1 cut(s) 506
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 4 cut(s) 23, 45, 522, 631
BmuI ACTGGG 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 376, 408
Bpu10I CCTNAGC 1 cut(s) 875
Bpu14I TTCGAA 2 cut(s) 276, 951
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 513, 514
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 4 cut(s) 107, 213, 356, 807
Bse21I CCTNAGG 1 cut(s) 978
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 5 cut(s) 263, 537, 559, 622, 692
BseLI CCNNNNNNNGG 3 cut(s) 75, 513, 514
BseMII CTCAG 1 cut(s) 969
BseNI ACTGG 4 cut(s) 107, 213, 356, 807
BseXI GCAGC 1 cut(s) 900
BshFI GGCC 2 cut(s) 732, 928
BsiHKAI GWGCWC 1 cut(s) 897
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 75, 513, 514
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 2 cut(s) 732, 928
Bsp119I TTCGAA 2 cut(s) 276, 951
Bsp1286I GDGCHC 1 cut(s) 897
Bsp143I GATC 1 cut(s) 864
BspANI GGCC 2 cut(s) 732, 928
BspCNI CTCAG 1 cut(s) 970
BspLI GGNNCC 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 885
BspT104I TTCGAA 2 cut(s) 276, 951
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 4 cut(s) 107, 213, 356, 807
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 864
BssNI GRCGYC 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 3 cut(s) 13, 58, 116
Bst6I CTCTTC 1 cut(s) 885
BstACI GRCGYC 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 143
BstBI TTCGAA 2 cut(s) 276, 951
BstC8I GCNNGC 2 cut(s) 734, 749
BstDEI CTNAG 2 cut(s) 875, 978
BstF5I GGATG 5 cut(s) 263, 537, 559, 622, 692
BstKTI GATC 1 cut(s) 867
BstMBI GATC 1 cut(s) 864
BstNSI RCATGY 2 cut(s) 381, 776
BstSFI CTRYAG 1 cut(s) 786
BstV1I GCAGC 1 cut(s) 900
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 2 cut(s) 732, 928
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 5 cut(s) 263, 537, 559, 622, 692
BtsIMutI CAGTG 2 cut(s) 100, 112
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 734, 749
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 4 cut(s) 318, 443, 504, 763
CseI GACGC 2 cut(s) 377, 805
CviAII CATG 8 cut(s) 378, 400, 541, 666, 744, 773, 847, 959
DdeI CTNAG 2 cut(s) 875, 978
DpnI GATC 1 cut(s) 866
DpnII GATC 1 cut(s) 864
DriI GACNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 885
Eam1105I GACNNNNNGTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 885
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 897
Eco47I GGWCC 4 cut(s) 318, 443, 504, 763
Eco53kI GAGCTC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 440
Eco81I CCTNAGG 1 cut(s) 978
EcoICRI GAGCTC 1 cut(s) 895
EcoO109I RGGNCCY 2 cut(s) 504, 763
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 38, 405
EcoT38I GRGCYC 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 8 cut(s) 381, 403, 544, 669, 747, 776, 850, 962
FaqI GGGAC 1 cut(s) 490
FatI CATG 8 cut(s) 377, 399, 540, 665, 743, 772, 846, 958
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 914
FokI GGATG 5 cut(s) 250, 544, 566, 609, 699
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 1 cut(s) 914
FspBI CTAG 4 cut(s) 224, 537, 675, 991
GluI GCNGC 1 cut(s) 914
HaeIII GGCC 2 cut(s) 732, 928
HapII CCGG 1 cut(s) 662
HgaI GACGC 2 cut(s) 377, 805
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 8 cut(s) 381, 403, 544, 669, 747, 776, 850, 962
HincII GTYRAC 2 cut(s) 119, 199
HindII GTYRAC 2 cut(s) 119, 199
HindIII AAGCTT 3 cut(s) 422, 453, 577
HinfI GANTC 1 cut(s) 721
HpaII CCGG 1 cut(s) 662
HphI GGTGA 4 cut(s) 212, 445, 579, 956
Hpy166II GTNNAC 3 cut(s) 119, 199, 242
Hpy188I TCNGA 5 cut(s) 41, 268, 420, 447, 649
Hpy188III TCNNGA 7 cut(s) 61, 172, 338, 350, 626, 921, 965
Hpy8I GTNNAC 3 cut(s) 119, 199, 242
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 6 cut(s) 286, 544, 839, 874, 918, 935
HpyCH4III ACNGT 3 cut(s) 13, 58, 116
HpyCH4IV ACGT 3 cut(s) 73, 121, 142
HpyCH4V TGCA 6 cut(s) 36, 403, 497, 838, 846, 902
HpyF3I CTNAG 2 cut(s) 875, 978
HpySE526I ACGT 3 cut(s) 73, 121, 142
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 8 cut(s) 381, 403, 544, 669, 747, 776, 850, 962
Kzo9I GATC 1 cut(s) 864
LguI GCTCTTC 1 cut(s) 885
LmnI GCTCC 1 cut(s) 900
Lsp1109I GCAGC 1 cut(s) 900
LweI GCATC 4 cut(s) 23, 45, 522, 631
MaeI CTAG 4 cut(s) 224, 537, 675, 991
MaeII ACGT 3 cut(s) 73, 121, 142
MaeIII GTNAC 3 cut(s) 208, 338, 358
MalI GATC 1 cut(s) 866
MboI GATC 1 cut(s) 864
MboII GAAGA 2 cut(s) 89, 902
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 897
MluCI AATT 6 cut(s) 175, 204, 252, 333, 345, 522
MnlI CCTC 9 cut(s) 198, 378, 402, 507, 622, 703, 722, 973, 976
Mph1103I ATGCAT 2 cut(s) 38, 405
MseI TTAA 2 cut(s) 233, 768
MslI CAYNNNNRTG 2 cut(s) 777, 963
MspI CCGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 829
NdeII GATC 1 cut(s) 864
NlaIII CATG 8 cut(s) 381, 403, 544, 669, 747, 776, 850, 962
NlaIV GGNNCC 1 cut(s) 506
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 2 cut(s) 38, 405
NspI RCATGY 2 cut(s) 381, 776
NspV TTCGAA 2 cut(s) 276, 951
PaqCI CACCTGC 1 cut(s) 551
PciI ACATGT 2 cut(s) 377, 772
PciSI GCTCTTC 1 cut(s) 885
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PctI GAATGC 1 cut(s) 829
PfeI GAWTC 1 cut(s) 721
PkrI GCNGC 1 cut(s) 915
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 2 cut(s) 504, 763
PscI ACATGT 2 cut(s) 377, 772
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 897
Psp1406I AACGTT 1 cut(s) 121
Psp5II RGGWCCY 2 cut(s) 504, 763
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 4 cut(s) 318, 443, 504, 763
PspPPI RGGWCCY 2 cut(s) 504, 763
RseI CAYNNNNRTG 2 cut(s) 777, 963
SacI GAGCTC 1 cut(s) 897
SalI GTCGAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 885
SaqAI TTAA 2 cut(s) 233, 768
SatI GCNGC 1 cut(s) 914
Sau3AI GATC 1 cut(s) 864
Sau96I GGNCC 4 cut(s) 318, 443, 504, 763
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 4 cut(s) 23, 45, 522, 631
SfcI CTRYAG 1 cut(s) 786
SfuI TTCGAA 2 cut(s) 276, 951
SinI GGWCC 4 cut(s) 318, 443, 504, 763
SmiMI CAYNNNNRTG 2 cut(s) 777, 963
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 6 cut(s) 175, 204, 252, 333, 345, 522
SspI AATATT 1 cut(s) 409
SspMI CTAG 4 cut(s) 224, 537, 675, 991
SstI GAGCTC 1 cut(s) 897
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 3 cut(s) 13, 58, 116
TaiI ACGT 3 cut(s) 76, 124, 145
TaqI TCGA 6 cut(s) 156, 198, 276, 383, 794, 951
TasI AATT 6 cut(s) 175, 204, 252, 333, 345, 522
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 2 cut(s) 233, 768
Tru9I TTAA 2 cut(s) 233, 768
TscAI CASTG 2 cut(s) 107, 119
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 913
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 6 cut(s) 74, 127, 305, 717, 903, 954
TspGWI ACGGA 1 cut(s) 887
TspRI CASTG 2 cut(s) 107, 119
VpaK11BI GGWCC 4 cut(s) 318, 443, 504, 763
XapI RAATTY 2 cut(s) 175, 333
XceI RCATGY 2 cut(s) 381, 776
XmaJI CCTAGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 4 cut(s) 224, 537, 675, 991
Zsp2I ATGCAT 2 cut(s) 38, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.