Rh1DG415800

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000430
Physical Location & Seq
Forward (+)
63165158 .. 63166808
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG415800.1

Sequence Viewer

Length: 870 bp
ATGGTCTTGAAGCTTTCTGACCCCAATGCTTTATACAATAGGGTCAATGATTCATATATTATAGGTTCCAGCAATGGCCTCCTCTGCTTAGTCCGTCATAATCATAAAATTGGCGCTGTGTATTTTAATATATCCAATCCTATTATCGGAGAGTCTATAGCTCTTCCAATCTTTAAAGATAGGGATAATGTTCCACTTGGATTTGCGTTTGGGTTTGGGTTTAGTTCCATAAGTCATGTCTACAAGGTGGTGCTGTTTATAAGTAGAAATCCACCATGTAAGAAGTTGGAGTGTATGGTTTTGACAGTTGGCTCTGGGATTTGGAGAAGCATTGGAAAAGAATATGGGGGCAAGAAGTTTTGGACCAGAAAGCTTGAAATTCATGACACAATTCAGGACCGCCGAATGACAATAGGGGATGACACATGTTGGGGGGGTCCTCTATCCAAGCATTATATTGAAGTTCTGAAACTTATAAAGGGGAAAAAGGCTCCGAAAAAAGCTTTACTGCTAGACAACTTTAGATTGAGCCTTTATACCCCTGCAACAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATACCTTACATTGCTAGGAAGGCTATGGTAGGTGTCCATATTCCAAGCTTTGTTTCACCCAAAGAGATTATCAGGGATTACATCTCCAAGGTAAGTGCAGCTACAGCTTCCACGCTACTGGATATGATTAGTGGTTTGAATGCCCTTCTATTGCATAAGTGCATGGTGGGAAAGGATGAGATCAAAAGGCTCAGGAAGGAGAATGAAGACCTTCGTGCAAGTGTAAAGCTGCTTTCGGGAAGGCCGGGTGAAGGTGATTTTGTACAGGAGGAGGATAACTACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

289

Amino Acids

32.38

Weight (kDa)

9.42

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 19 - 116 5.6e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 260, 476
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 1 cut(s) 843
AfiI CCNNNNNNNGG 4 cut(s) 146, 561, 562, 830
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 5 cut(s) 10, 377, 461, 569, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AluBI AGCT 8 cut(s) 13, 161, 373, 503, 627, 680, 686, 808
AluI AGCT 8 cut(s) 13, 161, 373, 503, 627, 680, 686, 808
AoxI GGCC 2 cut(s) 76, 821
ApeKI GCWGC 2 cut(s) 677, 808
ApoI RAATTY 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 4 cut(s) 363, 397, 437, 552
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 627, 839, 845
AvaII GGWCC 4 cut(s) 363, 397, 437, 552
BbsI GAAGAC 1 cut(s) 792
BbvI GCAGC 2 cut(s) 689, 795
BccI CCATC 1 cut(s) 569
BciVI GTATCC 1 cut(s) 573
BcnI CCSGG 1 cut(s) 825
BfaI CTAG 2 cut(s) 512, 594
BfmI CTRYAG 2 cut(s) 156, 681
BfoI RGCGCY 1 cut(s) 117
BfuI GTATCC 1 cut(s) 573
BisI GCNGC 2 cut(s) 678, 809
BlsI GCNGC 2 cut(s) 679, 810
Bme1390I CCNGG 1 cut(s) 825
Bme18I GGWCC 4 cut(s) 363, 397, 437, 552
BmgT120I GGNCC 4 cut(s) 363, 397, 437, 552
BmiI GGNNCC 4 cut(s) 67, 438, 492, 554
BmrFI CCNGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 825
BsaJI CCNNGG 1 cut(s) 666
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 561, 562, 830
Bse1I ACTGG 1 cut(s) 702
Bse3DI GCAATG 2 cut(s) 79, 588
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 2 cut(s) 424, 760
BseLI CCNNNNNNNGG 4 cut(s) 146, 561, 562, 830
BseMI GCAATG 2 cut(s) 79, 588
BseMII CTCAG 1 cut(s) 784
BseNI ACTGG 1 cut(s) 702
BseRI GAGGAG 2 cut(s) 71, 863
BseXI GCAGC 2 cut(s) 689, 795
BsgI GTGCAG 1 cut(s) 696
BshFI GGCC 2 cut(s) 78, 823
BsiSI CCGG 1 cut(s) 824
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 4 cut(s) 146, 561, 562, 830
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 2 cut(s) 78, 823
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 1 cut(s) 759
BspACI CCGC 1 cut(s) 400
BspANI GGCC 2 cut(s) 78, 823
BspCNI CTCAG 1 cut(s) 783
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 4 cut(s) 67, 438, 492, 554
BspQI GCTCTTC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 79, 588
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 1 cut(s) 702
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 666
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 168
BstAUI TGTACA 1 cut(s) 841
BstDEI CTNAG 2 cut(s) 88, 770
BstF5I GGATG 2 cut(s) 424, 760
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 762
BstMBI GATC 1 cut(s) 759
BstMWI GCNNNNNNNGC 3 cut(s) 84, 599, 683
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 823
BstSFI CTRYAG 2 cut(s) 156, 681
BstV1I GCAGC 2 cut(s) 689, 795
BstV2I GAAGAC 1 cut(s) 792
BstXI CCANNNNNNTGG 1 cut(s) 697
BsuI GTATCC 1 cut(s) 573
BsuRI GGCC 2 cut(s) 78, 823
BtsCI GGATG 2 cut(s) 424, 760
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 4 cut(s) 363, 397, 437, 552
Csp6I GTAC 1 cut(s) 842
CviAII CATG 5 cut(s) 236, 276, 383, 426, 742
CviQI GTAC 1 cut(s) 842
DdeI CTNAG 2 cut(s) 88, 770
DpnI GATC 1 cut(s) 761
DpnII GATC 1 cut(s) 759
DraI TTTAAA 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 666
Eco47I GGWCC 4 cut(s) 363, 397, 437, 552
EcoO109I RGGNCCY 2 cut(s) 437, 552
EcoT14I CCWWGG 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 666
FaeI CATG 5 cut(s) 239, 279, 386, 429, 745
FaqI GGGAC 1 cut(s) 538
FatI CATG 5 cut(s) 235, 275, 382, 425, 741
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 678, 809
FokI GGATG 2 cut(s) 431, 767
Fsp4HI GCNGC 2 cut(s) 678, 809
FspBI CTAG 2 cut(s) 512, 594
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 678, 809
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 78, 823
HapII CCGG 1 cut(s) 824
HhaI GCGC 1 cut(s) 116
Hin1II CATG 5 cut(s) 239, 279, 386, 429, 745
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 4 cut(s) 11, 371, 501, 625
HinfI GANTC 2 cut(s) 50, 152
HpaII CCGG 1 cut(s) 824
HphI GGTGA 3 cut(s) 627, 839, 845
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 19, 149, 468, 495
Hpy188III TCNNGA 5 cut(s) 7, 383, 395, 772, 816
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 6 cut(s) 592, 734, 769, 800, 813, 824
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 5 cut(s) 545, 677, 733, 741, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 599, 683
HpyF3I CTNAG 2 cut(s) 88, 770
Hsp92II CATG 5 cut(s) 239, 279, 386, 429, 745
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 759
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 2 cut(s) 689, 795
MaeI CTAG 2 cut(s) 512, 594
MalI GATC 1 cut(s) 761
MboI GATC 1 cut(s) 759
MboII GAAGA 2 cut(s) 155, 797
MluCI AATT 4 cut(s) 108, 378, 390, 570
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 6 cut(s) 89, 92, 450, 555, 841, 844
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 2 cut(s) 126, 174
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 84, 599, 683
NciI CCSGG 1 cut(s) 825
NdeII GATC 1 cut(s) 759
NlaIII CATG 5 cut(s) 239, 279, 386, 429, 745
NlaIV GGNNCC 4 cut(s) 67, 438, 492, 554
NspI RCATGY 1 cut(s) 429
PagI TCATGA 1 cut(s) 382
PciI ACATGT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 168
PctI GAATGC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 679, 810
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PpuMI RGGWCCY 2 cut(s) 437, 552
PscI ACATGT 1 cut(s) 425
PsiI TTATAA 2 cut(s) 260, 476
Psp5II RGGWCCY 2 cut(s) 437, 552
PspN4I GGNNCC 4 cut(s) 67, 438, 492, 554
PspPI GGNCC 4 cut(s) 363, 397, 437, 552
PspPPI RGGWCCY 2 cut(s) 437, 552
RsaI GTAC 1 cut(s) 843
RsaNI GTAC 1 cut(s) 842
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 126, 174
SatI GCNGC 2 cut(s) 678, 809
Sau3AI GATC 1 cut(s) 759
Sau96I GGNCC 4 cut(s) 363, 397, 437, 552
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 825
SfcI CTRYAG 2 cut(s) 156, 681
SinI GGWCC 4 cut(s) 363, 397, 437, 552
Sse9I AATT 4 cut(s) 108, 378, 390, 570
SsiI CCGC 1 cut(s) 400
SspMI CTAG 2 cut(s) 512, 594
StyD4I CCNGG 1 cut(s) 823
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 1 cut(s) 307
TasI AATT 4 cut(s) 108, 378, 390, 570
TatI WGTACW 1 cut(s) 841
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 126, 174
Tru9I TTAA 2 cut(s) 126, 174
TseI GCWGC 2 cut(s) 677, 808
TspDTI ATGAA 3 cut(s) 42, 371, 798
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 4 cut(s) 363, 397, 437, 552
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 512, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.