RchiOBHm_Chr3g0494781

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000430
Physical Location & Seq
Reverse (-)
43723182 .. 43724006
825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45728

Sequence Viewer

Length: 825 bp
ATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGCCATAATGGTAAAATTGATGCTTTCATTTTTAACATATCCAATCCCATTACCGGCGAGTCTGTACCTCTTCCAGTCAATAAAGAAATAGGTCGTCCAGCTCACTTTGGGTTTGGATTTAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACATCCAATGAAGTTAATGAACATCGCTTTCACAAAAGAAAATTGAACGTGATGGTTCTGACTGTTGGCTCTGGGATTTGGAGAAGAATTGGCAAAGTATCCAATGTCATGCTTGGAACACGACAAGGAGTCTTTCATAATGGATTTCTTCACTGGGTTTGCCACTATAGAAAAGGTTGTCATCACTTTTTCATACGTGCATTTGATGTTGAAAGCGAGGGTTTCAAGGATTTACCAATGCCCCCTTATTATTTCCGTCCCGATTTTATGCCTCAAATGCGAGTCTTAGGAGGTTCACTTTCTGTAAGTGATGGCCGCACGTTTTGGGTAATGAAAGAGTACGGCGTCAAGAGGTCTTGGACCAAAGAGCTTGAAATTGGACATGATACAATTTATCCTAATGACCTATATGGGTCCTATATACCATATGTTTCAGTTTTGAAATTTACAGAGGGGAAGGTTTTGTTGTTAGCAAAAACTAAATTGTGCCTCTATACTCCTGAAACAAGGACCCTTGTGAGGGTTGAGATTGATGGGATGCCATCAGGGGGCTTCCATTTCGTGGCAGACCATATTCCGAGCTTTGTTTCTCCGAAGGAAATTATCAAGGATTACCTCTCCAAAGTACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

274

Amino Acids

31.25

Weight (kDa)

9.29

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 3 - 246 2.4e-23 F-box associated beta propeller domain
FBA_1 PF07734 3 - 258 9.9e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 751
AciI CCGC 2 cut(s) 34, 505
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 534
AfaI GTAC 3 cut(s) 99, 530, 816
AfiI CCNNNNNNNGG 5 cut(s) 86, 708, 709, 737, 751
AgsI TTSAA 5 cut(s) 235, 401, 415, 563, 631
AhdI GACNNNNNGTC 1 cut(s) 317
AluBI AGCT 3 cut(s) 134, 559, 771
AluI AGCT 3 cut(s) 134, 559, 771
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 502
ApoI RAATTY 1 cut(s) 632
AspS9I GGNCC 3 cut(s) 549, 603, 699
AvaII GGWCC 3 cut(s) 549, 603, 699
BamHI GGATCC 1 cut(s) 5
BccI CCATC 4 cut(s) 235, 494, 716, 739
BceAI ACGGC 1 cut(s) 547
BciVI GTATCC 1 cut(s) 298
BfaI CTAG 1 cut(s) 819
BfmI CTRYAG 1 cut(s) 355
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 506
Bme18I GGWCC 3 cut(s) 549, 603, 699
BmeRI GACNNNNNGTC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 549, 603, 699
BmiI GGNNCC 3 cut(s) 7, 604, 701
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 43, 717
BmuI ACTGGG 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 534
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 708, 709, 737, 751
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 107, 347
Bse3DI GCAATG 1 cut(s) 19
BseGI GGATG 2 cut(s) 191, 732
BseLI CCNNNNNNNGG 5 cut(s) 86, 708, 709, 737, 751
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 107, 347
BshFI GGCC 1 cut(s) 504
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 2 cut(s) 141, 432
BslI CCNNNNNNNGG 5 cut(s) 86, 708, 709, 737, 751
BsmFI GGGAC 2 cut(s) 141, 432
BsnI GGCC 1 cut(s) 504
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 2 cut(s) 34, 505
BspANI GGCC 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 7, 604, 701
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 107, 347
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 1 cut(s) 5
BssNI GRCGYC 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 191, 732
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 3 cut(s) 24, 33, 466
BstSFI CTRYAG 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 504
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 2 cut(s) 191, 732
BtsIMutI CAGTG 1 cut(s) 340
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 549, 603, 699
CseI GACGC 1 cut(s) 523
Csp6I GTAC 3 cut(s) 98, 529, 815
CviAII CATG 2 cut(s) 298, 572
CviJI RGCY 7 cut(s) 18, 134, 258, 504, 559, 741, 771
CviKI_1 RGCY 7 cut(s) 18, 134, 258, 504, 559, 741, 771
CviQI GTAC 3 cut(s) 98, 529, 815
DdeI CTNAG 1 cut(s) 475
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
DriI GACNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 549, 603, 699
EcoO109I RGGNCCY 2 cut(s) 603, 699
FaeI CATG 2 cut(s) 301, 575
FaqI GGGAC 2 cut(s) 141, 432
FatI CATG 2 cut(s) 297, 571
FauNDI CATATG 1 cut(s) 616
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 2 cut(s) 178, 739
Fsp4HI GCNGC 1 cut(s) 505
FspBI CTAG 1 cut(s) 819
GluI GCNGC 1 cut(s) 505
HaeIII GGCC 1 cut(s) 504
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 523
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 2 cut(s) 301, 575
HinfI GANTC 3 cut(s) 92, 318, 471
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 189, 485
Hpy188I TCNGA 3 cut(s) 249, 768, 783
Hpy188III TCNNGA 3 cut(s) 449, 538, 689
Hpy8I GTNNAC 2 cut(s) 189, 485
HpyAV CCTTC 2 cut(s) 640, 778
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 3 cut(s) 237, 385, 509
HpyCH4V TGCA 2 cut(s) 12, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 33, 466
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 3 cut(s) 237, 385, 509
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 2 cut(s) 301, 575
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 8 cut(s) 22, 100, 120, 144, 246, 328, 702, 720
LweI GCATC 2 cut(s) 43, 717
MaeI CTAG 1 cut(s) 819
MaeII ACGT 3 cut(s) 237, 385, 509
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 3 cut(s) 95, 285, 329
MflI RGATCY 1 cut(s) 5
MluCI AATT 8 cut(s) 48, 230, 276, 564, 579, 632, 671, 789
MlyI GAGTC 3 cut(s) 101, 327, 480
MseI TTAA 3 cut(s) 66, 204, 823
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 24, 33, 466
NdeI CATATG 1 cut(s) 616
NdeII GATC 1 cut(s) 5
NlaIII CATG 2 cut(s) 301, 575
NlaIV GGNNCC 3 cut(s) 7, 604, 701
PflMI CCANNNNNTGG 1 cut(s) 751
PkrI GCNGC 1 cut(s) 506
PleI GAGTC 3 cut(s) 100, 326, 479
PpsI GAGTC 3 cut(s) 100, 326, 479
Ppu21I YACGTR 1 cut(s) 386
PpuMI RGGWCCY 2 cut(s) 603, 699
Psp5II RGGWCCY 2 cut(s) 603, 699
PspN4I GGNNCC 3 cut(s) 7, 604, 701
PspPI GGNCC 3 cut(s) 549, 603, 699
PspPPI RGGWCCY 2 cut(s) 603, 699
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 3 cut(s) 99, 530, 816
RsaNI GTAC 3 cut(s) 98, 529, 815
SaqAI TTAA 3 cut(s) 66, 204, 823
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 3 cut(s) 549, 603, 699
SchI GAGTC 3 cut(s) 101, 327, 480
SfaNI GCATC 2 cut(s) 43, 717
SfcI CTRYAG 1 cut(s) 355
SinI GGWCC 3 cut(s) 549, 603, 699
Sse9I AATT 8 cut(s) 48, 230, 276, 564, 579, 632, 671, 789
SsiI CCGC 2 cut(s) 34, 505
SspMI CTAG 1 cut(s) 819
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 3 cut(s) 240, 388, 512
TasI AATT 8 cut(s) 48, 230, 276, 564, 579, 632, 671, 789
TauI GCSGC 1 cut(s) 507
Tru1I TTAA 3 cut(s) 66, 204, 823
Tru9I TTAA 3 cut(s) 66, 204, 823
TscAI CASTG 1 cut(s) 347
TspDTI ATGAA 6 cut(s) 49, 213, 222, 314, 370, 536
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 751
VpaK11BI GGWCC 3 cut(s) 549, 603, 699
XapI RAATTY 1 cut(s) 632
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.