Rh1BG342700

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000430
Physical Location & Seq
Forward (+)
47589769 .. 47591314
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG342700.1

Sequence Viewer

Length: 996 bp
ATGGTTTTGACAGTTGGCTCTGGAATTTGGAGAAGCATTGGAAAAGTATCTGTAAATACCGAGACTACCAGATATGGGATCTTTCATAATGGATTTCTTCATTGGATTTACAGCTGCAGAAAACGTTCTCGTTTTCGTTTCATACGTGCCTTTGATGTTGAAAGTGAGCGTTTCAAGAATTTACCAATGCCTCCTTGTTCTGTCGACCCAATTACAACTATTGCTTACCTAGGAGTGTTAAATGGTTCACTATCTATAAGTTGTCGCGCATTCGCTTTCGAAGTTTGGCTAATGAAGGAATATAGGGGCAAGAAGTTTTGGATGAAAGAGCTTGAAATTCGTGACACAATTCAGGAGCCAATAACAGTAAACGGTGACACATGCTCCAGTCGTCCTCTATACATGCATTATTTTGAAGTTCTGAAACTTATAAAGGGGAAAAACTCTCCGAAAAAAGCTTTATTGTTAGACGACTCTAGATTGAGCCTTTATACCCCTGCAACAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATGCCTTGCATTGTTAAGAAGGATGTGGCAGGTGTCCATATTCCAAGCTTTGTTTCACCTAAAAACATTATCAGGGATTACATCTCCAAGCATGCAGAGGAAGTAGCTGAAACATCTGATATAAAAATACCAGCATGGACAACTAGTGTTGTGGGATGGGGAGAGAACGACGAGAGCGAGGTAGTTGAGATTCCAAGAGGCCAGCCTACCCCATGCCTGCCACTCCCAAAGGACCTTAAACATGTAAGTGCAGCTACAGCTTCCACGCTACTGGATATGATTAGTGGCTTGAATGCCCTTCTATTGCATAAGTGCATGGTAGGAAAGGATGAGATCCAAAGGCTTAGGAAGGAGAATGAAAAGCTCCGTGCAAGTGTAAAGCTGCTTTCGGGAAGGCCAGATGATGGTGAAGATGATTTTGTATGTCATGTTCGTGAGCCACAACCTGAGGAGGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

331

Amino Acids

37.48

Weight (kDa)

8.53

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 110 5.9e-09 F-box associated beta propeller domain
FBA_1 PF07734 6 - 115 9.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AarI CACCTGC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 938
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 267
AclI AACGTT 1 cut(s) 124
AclWI GGATC 2 cut(s) 86, 862
AcsI RAATTY 3 cut(s) 24, 178, 336
AfiI CCNNNNNNNGG 4 cut(s) 75, 516, 517, 938
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 6 cut(s) 161, 175, 335, 416, 524, 826
AhlI ACTAGT 1 cut(s) 677
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 9 cut(s) 114, 331, 458, 582, 641, 788, 794, 898, 916
AluI AGCT 9 cut(s) 114, 331, 458, 582, 641, 788, 794, 898, 916
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 2 cut(s) 86, 862
AoxI GGCC 2 cut(s) 733, 929
ApeKI GCWGC 3 cut(s) 114, 785, 916
ApoI RAATTY 3 cut(s) 24, 178, 336
Asp700I GAANNNNTTC 1 cut(s) 124
AspA2I CCTAGG 1 cut(s) 229
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 507, 766
AsuHPI GGTGA 3 cut(s) 386, 582, 953
AsuII TTCGAA 1 cut(s) 279
AvaII GGWCC 2 cut(s) 507, 766
AvrII CCTAGG 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 981
BbvI GCAGC 3 cut(s) 101, 797, 903
BccI CCATC 3 cut(s) 524, 684, 932
BcoDI GTCTC 1 cut(s) 56
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 4 cut(s) 230, 477, 678, 994
BfmI CTRYAG 2 cut(s) 115, 789
BfuAI ACCTGC 1 cut(s) 554
BisI GCNGC 3 cut(s) 115, 786, 917
BlnI CCTAGG 1 cut(s) 229
BlsI GCNGC 3 cut(s) 116, 787, 918
Bme18I GGWCC 2 cut(s) 507, 766
BmgT120I GGNCC 2 cut(s) 507, 766
BmiI GGNNCC 2 cut(s) 357, 509
BmsI GCATC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 370
Bpu10I CCTNAGC 1 cut(s) 878
Bpu14I TTCGAA 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 516, 517, 938
Bse1I ACTGG 2 cut(s) 387, 810
Bse21I CCTNAGG 1 cut(s) 981
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 5 cut(s) 327, 540, 562, 695, 868
BseLI CCNNNNNNNGG 4 cut(s) 75, 516, 517, 938
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 2 cut(s) 387, 810
BseXI GCAGC 3 cut(s) 101, 797, 903
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 735, 931
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 4 cut(s) 75, 516, 517, 938
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 2 cut(s) 269, 832
BsnI GGCC 2 cut(s) 735, 931
Bsp119I TTCGAA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 78, 867
BspANI GGCC 2 cut(s) 735, 931
BspCNI CTCAG 1 cut(s) 973
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 357, 509
BspMAI CTGCAG 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 554
BspPI GGATC 2 cut(s) 86, 862
BspT104I TTCGAA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 387, 810
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 78, 867
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 13, 367, 374
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 627, 737, 752
BstDEI CTNAG 2 cut(s) 878, 981
BstF5I GGATG 5 cut(s) 327, 540, 562, 695, 868
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 2 cut(s) 81, 870
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 78, 867
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNSI RCATGY 4 cut(s) 384, 406, 629, 779
BstSFI CTRYAG 2 cut(s) 115, 789
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 101, 797, 903
BstX2I RGATCY 2 cut(s) 78, 867
BstXI CCANNNNNNTGG 1 cut(s) 805
BstYI RGATCY 2 cut(s) 78, 867
Bsu36I CCTNAGG 1 cut(s) 981
BsuRI GGCC 2 cut(s) 735, 931
BtsCI GGATG 5 cut(s) 327, 540, 562, 695, 868
BveI ACCTGC 1 cut(s) 554
Cac8I GCNNGC 3 cut(s) 627, 737, 752
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 507, 766
CviAII CATG 8 cut(s) 381, 403, 626, 669, 747, 776, 850, 962
DdeI CTNAG 2 cut(s) 878, 981
DpnI GATC 2 cut(s) 80, 869
DpnII GATC 2 cut(s) 78, 867
Eco130I CCWWGG 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 507, 766
Eco81I CCTNAGG 1 cut(s) 981
EcoO109I RGGNCCY 2 cut(s) 507, 766
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 8 cut(s) 384, 406, 629, 672, 750, 779, 853, 965
FaqI GGGAC 1 cut(s) 493
FatI CATG 8 cut(s) 380, 402, 625, 668, 746, 775, 849, 961
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 115, 786, 917
FokI GGATG 5 cut(s) 334, 547, 569, 702, 875
Fsp4HI GCNGC 3 cut(s) 115, 786, 917
FspBI CTAG 4 cut(s) 230, 477, 678, 994
GlaI GCGC 1 cut(s) 268
GluI GCNGC 3 cut(s) 115, 786, 917
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 2 cut(s) 735, 931
HhaI GCGC 1 cut(s) 269
Hin1II CATG 8 cut(s) 384, 406, 629, 672, 750, 779, 853, 965
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 2 cut(s) 456, 580
HinfI GANTC 2 cut(s) 473, 724
HphI GGTGA 3 cut(s) 386, 582, 953
Hpy166II GTNNAC 3 cut(s) 205, 248, 370
Hpy188I TCNGA 3 cut(s) 423, 450, 652
Hpy188III TCNNGA 7 cut(s) 21, 175, 341, 353, 477, 924, 968
Hpy8I GTNNAC 3 cut(s) 205, 248, 370
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 5 cut(s) 289, 547, 842, 877, 921
HpyCH4III ACNGT 3 cut(s) 13, 367, 374
HpyCH4IV ACGT 2 cut(s) 124, 145
HpyCH4V TGCA 9 cut(s) 117, 406, 500, 543, 629, 785, 841, 849, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 2 cut(s) 878, 981
HpySE526I ACGT 2 cut(s) 124, 145
Hsp92II CATG 8 cut(s) 384, 406, 629, 672, 750, 779, 853, 965
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 78, 867
LmnI GCTCC 3 cut(s) 355, 389, 903
Lsp1109I GCAGC 3 cut(s) 101, 797, 903
LweI GCATC 1 cut(s) 525
MaeI CTAG 4 cut(s) 230, 477, 678, 994
MaeII ACGT 2 cut(s) 124, 145
MaeIII GTNAC 2 cut(s) 341, 374
MalI GATC 2 cut(s) 80, 869
MboI GATC 2 cut(s) 78, 867
MboII GAAGA 2 cut(s) 89, 956
MflI RGATCY 2 cut(s) 78, 867
MluCI AATT 6 cut(s) 24, 178, 210, 336, 348, 525
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 8 cut(s) 201, 405, 510, 625, 706, 725, 976, 979
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 3 cut(s) 239, 549, 771
MslI CAYNNNNRTG 2 cut(s) 780, 966
MspA1I CMGCKG 1 cut(s) 114
Mva1269I GAATGC 2 cut(s) 269, 832
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 791
NdeII GATC 2 cut(s) 78, 867
NlaIII CATG 8 cut(s) 384, 406, 629, 672, 750, 779, 853, 965
NlaIV GGNNCC 2 cut(s) 357, 509
NmuCI GTSAC 2 cut(s) 341, 374
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 4 cut(s) 384, 406, 629, 779
NspV TTCGAA 1 cut(s) 279
PaeI GCATGC 1 cut(s) 629
PaqCI CACCTGC 1 cut(s) 554
PciI ACATGT 1 cut(s) 775
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 708
PctI GAATGC 2 cut(s) 269, 832
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 938
PkrI GCNGC 3 cut(s) 116, 787, 918
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
Ppu21I YACGTR 1 cut(s) 146
PpuMI RGGWCCY 2 cut(s) 507, 766
PscI ACATGT 1 cut(s) 775
PsiI TTATAA 1 cut(s) 431
Psp1406I AACGTT 1 cut(s) 124
Psp5II RGGWCCY 2 cut(s) 507, 766
PspN4I GGNNCC 2 cut(s) 357, 509
PspPI GGNCC 2 cut(s) 507, 766
PspPPI RGGWCCY 2 cut(s) 507, 766
PsrI GAACNNNNNNTAC 2 cut(s) 948, 980
PstI CTGCAG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 78, 867
PvuII CAGCTG 1 cut(s) 114
RseI CAYNNNNRTG 2 cut(s) 780, 966
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 239, 549, 771
SatI GCNGC 3 cut(s) 115, 786, 917
Sau3AI GATC 2 cut(s) 78, 867
Sau96I GGNCC 2 cut(s) 507, 766
SchI GAGTC 1 cut(s) 467
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 2 cut(s) 115, 789
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 2 cut(s) 507, 766
SmiMI CAYNNNNRTG 2 cut(s) 780, 966
SpeI ACTAGT 1 cut(s) 677
SphI GCATGC 1 cut(s) 629
Sse9I AATT 6 cut(s) 24, 178, 210, 336, 348, 525
SspMI CTAG 4 cut(s) 230, 477, 678, 994
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 3 cut(s) 13, 367, 374
TaiI ACGT 2 cut(s) 127, 148
TaqI TCGA 2 cut(s) 204, 279
TasI AATT 6 cut(s) 24, 178, 210, 336, 348, 525
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 3 cut(s) 239, 549, 771
Tru9I TTAA 3 cut(s) 239, 549, 771
TseFI GTSAC 2 cut(s) 341, 374
TseI GCWGC 3 cut(s) 114, 785, 916
Tsp45I GTSAC 2 cut(s) 341, 374
TspDTI ATGAA 6 cut(s) 74, 89, 130, 308, 338, 906
TspGWI ACGGA 1 cut(s) 890
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 2 cut(s) 507, 766
XapI RAATTY 3 cut(s) 24, 178, 336
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 4 cut(s) 384, 406, 629, 779
XmaJI CCTAGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 4 cut(s) 230, 477, 678, 994
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.