Rh3BG217700

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
19656352 .. 19657614
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG217700.1

Sequence Viewer

Length: 1263 bp
ATGAACAAGCAGAAAATCAAGACAACCAACACTGAGAGAGATCAAGAAGTAGAAGACAAAAGAGATGATGAGAAACCCTGCATTATTCTACAATTGCCAGACCACATAATCCTGGAGATCTTCTGTAGAATCCCAATAAACACGGTCATCCAATGCAAGTATGTGTGCAAGTCTTGGCGTCGTTCTCTCTCAGACCACGAGTTCTCAAAATCCCTATTTGCGAATTTCAAAAAAAAAGAAAAATCCCTATTTGCACGAACTCCGGCGTGGTTGTTTCTCCAAGACTATAGTAGGACCCACCGGAGCCGAAACACCGAACGTTATCGTATATCCCCGAATAAGCACATCTTGGCCAACTTGGAAAGCGTCTCGAGCCCAAACAACGTGGTCTTGAAGCTTTCAAATCCCAATGCCTTATACAACAGGCTCCATACAAGTTTTACAGGTATTATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGCCATAATCGTAAAATTGATGCTTTCATTTTTAACATATCCAATCCCATTACCGGCGAGTCTGTACCTCTTCCAGTCAATAAAGAAATAGGCCGTCCAGCTCACTTTGGGTTTGGGTATAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACATCCAATGAAGTTAATAAACATCGCTTTTGTTGTCAATTGGACGTGATGGTTTTGACTGTTGGCTCTGTGATTTGGAGAAGAATTGGCAAAGTATCCAATGACATGCATGGAACACGAGAAGGGGTCTTTCATAATGGATTTCTTCACTGGGTTTGTCGCTGTACGGAGGGTTTTTTCATACGTGCATTTGATGTTGAACGCGAGGGTTTCAAGGATTTACCAATGCCCCCTTATTATTTCCATCCCGATTCTATACCTCGAATGCGAGTCTTAGGAGGTTCACTTTCTGTAAGTGATGGCCGCACGCTTTGGGTAATGAAAGAGTACGGCGTCAAGAGGTCTTGGACCAAAGAGCTTGAAATTGGACATGATACAATTTATCCTAATGACCCATATGGGTCCTATATACGATGTGTTTCAGTTTTGAAATTTACAGAGGGGAAGGTTTTGTTGTTAGCAAACACTAATTTGTGCCTCTATACTCCAGAAACAAGGACCCTTGTGAGGGTTGAGATTGATGGGATGCCATCAGGGGGCTTCCGTTTCGTGGCAGACCATATTCCGAGCTTTGTTTCTCCGAAGGATATTATCAAGGATTACCTCTCCAAAGTACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

48.38

Weight (kDa)

9.25

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 68 2e-08 F-box domain
F-box-like PF12937 29 - 73 2.4e-07 F-box-like
FBA_1 PF07734 126 - 403 9.4e-14 F-box associated beta propeller domain
FBA_3 PF08268 145 - 395 2.3e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 843
AciI CCGC 2 cut(s) 484, 943
AclI AACGTT 1 cut(s) 319
AclWI GGATC 2 cut(s) 450, 463
AcoI YGGCCR 2 cut(s) 351, 940
AcsI RAATTY 2 cut(s) 223, 1070
AcyI GRCGYC 2 cut(s) 178, 972
AfaI GTAC 4 cut(s) 549, 805, 968, 1254
AfiI CCNNNNNNNGG 5 cut(s) 536, 1146, 1147, 1175, 1189
AgsI TTSAA 7 cut(s) 229, 394, 402, 839, 853, 1001, 1069
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 4 cut(s) 397, 584, 997, 1209
AluI AGCT 4 cut(s) 397, 584, 997, 1209
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 2 cut(s) 450, 463
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 3 cut(s) 351, 574, 940
ApoI RAATTY 2 cut(s) 223, 1070
AspS9I GGNCC 4 cut(s) 294, 987, 1041, 1137
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 4 cut(s) 294, 987, 1041, 1137
BalI TGGCCA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 377
BauI CACGAG 2 cut(s) 197, 756
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 5 cut(s) 682, 891, 932, 1154, 1177
BceAI ACGGC 2 cut(s) 561, 985
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 1257
BfmI CTRYAG 2 cut(s) 124, 286
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 1 cut(s) 117
BisI GCNGC 1 cut(s) 943
BlsI GCNGC 1 cut(s) 944
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 4 cut(s) 294, 987, 1041, 1137
BmeT110I CYCGRG 1 cut(s) 370
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 4 cut(s) 294, 987, 1041, 1137
BmiI GGNNCC 6 cut(s) 296, 305, 428, 457, 1042, 1139
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 799
BmsI GCATC 2 cut(s) 493, 1155
BmuI ACTGGG 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 134, 1110
BsaAI YACGTR 1 cut(s) 824
BsaHI GRCGYC 2 cut(s) 178, 972
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 5 cut(s) 536, 1146, 1147, 1175, 1189
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 557, 794
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 4 cut(s) 147, 641, 883, 1170
BseLI CCNNNNNNNGG 5 cut(s) 536, 1146, 1147, 1175, 1189
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 24, 204
BseNI ACTGG 2 cut(s) 557, 794
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 3 cut(s) 353, 576, 942
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 3 cut(s) 263, 301, 537
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 5 cut(s) 536, 1146, 1147, 1175, 1189
BsmAI GTCTC 1 cut(s) 373
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 3 cut(s) 353, 576, 942
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 40, 117, 455
BspACI CCGC 2 cut(s) 484, 943
BspANI GGCC 3 cut(s) 353, 576, 942
BspCNI CTCAG 2 cut(s) 25, 203
BspFNI CGCG 1 cut(s) 843
BspLI GGNNCC 6 cut(s) 296, 305, 428, 457, 1042, 1139
BspPI GGATC 2 cut(s) 450, 463
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 2 cut(s) 557, 794
BssAI RCCGGY 1 cut(s) 536
BssMI GATC 3 cut(s) 40, 117, 455
BssNI GRCGYC 2 cut(s) 178, 972
BssSI CACGAG 2 cut(s) 197, 756
Bst2BI CACGAG 2 cut(s) 197, 756
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 145, 700
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 2 cut(s) 178, 972
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 1 cut(s) 947
BstDEI CTNAG 3 cut(s) 33, 190, 913
BstF5I GGATG 4 cut(s) 147, 641, 883, 1170
BstFNI CGCG 1 cut(s) 843
BstKTI GATC 3 cut(s) 43, 120, 458
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 3 cut(s) 40, 117, 455
BstMWI GCNNNNNNNGC 3 cut(s) 372, 474, 483
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 124, 286
BstUI CGCG 1 cut(s) 843
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 117, 455
BstYI RGATCY 2 cut(s) 117, 455
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 353, 576, 942
BtgZI GCGATG 1 cut(s) 647
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 4 cut(s) 147, 641, 883, 1170
BtsIMutI CAGTG 2 cut(s) 30, 787
Cac8I GCNNGC 1 cut(s) 947
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 294, 987, 1041, 1137
CseI GACGC 3 cut(s) 167, 355, 961
Csp6I GTAC 4 cut(s) 548, 804, 967, 1253
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 3 cut(s) 745, 749, 1010
CviQI GTAC 4 cut(s) 548, 804, 967, 1253
DdeI CTNAG 3 cut(s) 33, 190, 913
DpnI GATC 3 cut(s) 42, 119, 457
DpnII GATC 3 cut(s) 40, 117, 455
EaeI YGGCCR 2 cut(s) 351, 940
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 4 cut(s) 294, 987, 1041, 1137
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 3 cut(s) 294, 1041, 1137
EcoRII CCWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 3 cut(s) 748, 752, 1013
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 591
FatI CATG 3 cut(s) 744, 748, 1009
FauNDI CATATG 1 cut(s) 1036
Fnu4HI GCNGC 1 cut(s) 943
FokI GGATG 4 cut(s) 134, 628, 870, 1177
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 943
FspBI CTAG 1 cut(s) 1257
GluI GCNGC 1 cut(s) 943
GsuI CTGGAG 2 cut(s) 134, 1110
HaeIII GGCC 3 cut(s) 353, 576, 942
HapII CCGG 3 cut(s) 263, 301, 537
HgaI GACGC 3 cut(s) 167, 355, 961
Hin1I GRCGYC 2 cut(s) 178, 972
Hin1II CATG 3 cut(s) 748, 752, 1013
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 129, 542, 890, 909
HpaII CCGG 3 cut(s) 263, 301, 537
Hpy166II GTNNAC 2 cut(s) 639, 923
Hpy188I TCNGA 3 cut(s) 193, 1206, 1221
Hpy188III TCNNGA 7 cut(s) 19, 44, 370, 391, 887, 976, 1127
Hpy8I GTNNAC 2 cut(s) 639, 923
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 755, 1078, 1216
HpyCH4III ACNGT 2 cut(s) 145, 700
HpyCH4IV ACGT 4 cut(s) 319, 384, 684, 823
HpyCH4V TGCA 7 cut(s) 81, 156, 168, 254, 462, 748, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 474, 483
HpyF3I CTNAG 3 cut(s) 33, 190, 913
HpySE526I ACGT 4 cut(s) 319, 384, 684, 823
Hsp92I GRCGYC 2 cut(s) 178, 972
Hsp92II CATG 3 cut(s) 748, 752, 1013
Kzo9I GATC 3 cut(s) 40, 117, 455
LmnI GCTCC 2 cut(s) 303, 432
LweI GCATC 2 cut(s) 493, 1155
MaeI CTAG 1 cut(s) 1257
MaeII ACGT 4 cut(s) 319, 384, 684, 823
MalI GATC 3 cut(s) 42, 119, 457
MboI GATC 3 cut(s) 40, 117, 455
MboII GAAGA 5 cut(s) 65, 112, 545, 732, 776
MfeI CAATTG 2 cut(s) 92, 677
MflI RGATCY 2 cut(s) 117, 455
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 9 cut(s) 92, 223, 498, 677, 723, 1002, 1017, 1070, 1108
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 2 cut(s) 551, 918
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 750
MscI TGGCCA 1 cut(s) 353
MseI TTAA 3 cut(s) 516, 654, 1261
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 3 cut(s) 263, 301, 537
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 2 cut(s) 92, 677
Mva1269I GAATGC 1 cut(s) 909
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 3 cut(s) 372, 474, 483
NdeI CATATG 1 cut(s) 1036
NdeII GATC 3 cut(s) 40, 117, 455
NlaIII CATG 3 cut(s) 748, 752, 1013
NlaIV GGNNCC 6 cut(s) 296, 305, 428, 457, 1042, 1139
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 1 cut(s) 748
PaeR7I CTCGAG 1 cut(s) 370
PctI GAATGC 1 cut(s) 909
PfeI GAWTC 2 cut(s) 129, 890
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 1 cut(s) 944
PleI GAGTC 2 cut(s) 550, 917
PpsI GAGTC 2 cut(s) 550, 917
Ppu21I YACGTR 1 cut(s) 824
PpuMI RGGWCCY 3 cut(s) 294, 1041, 1137
Psp1406I AACGTT 1 cut(s) 319
Psp5II RGGWCCY 3 cut(s) 294, 1041, 1137
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 6 cut(s) 296, 305, 428, 457, 1042, 1139
PspPI GGNCC 4 cut(s) 294, 987, 1041, 1137
PspPPI RGGWCCY 3 cut(s) 294, 1041, 1137
PsuI RGATCY 2 cut(s) 117, 455
RsaI GTAC 4 cut(s) 549, 805, 968, 1254
RsaNI GTAC 4 cut(s) 548, 804, 967, 1253
SaqAI TTAA 3 cut(s) 516, 654, 1261
SatI GCNGC 1 cut(s) 943
Sau3AI GATC 3 cut(s) 40, 117, 455
Sau96I GGNCC 4 cut(s) 294, 987, 1041, 1137
SchI GAGTC 2 cut(s) 551, 918
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 2 cut(s) 493, 1155
SfcI CTRYAG 2 cut(s) 124, 286
Sfr274I CTCGAG 1 cut(s) 370
SinI GGWCC 4 cut(s) 294, 987, 1041, 1137
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 9 cut(s) 92, 223, 498, 677, 723, 1002, 1017, 1070, 1108
SsiI CCGC 2 cut(s) 484, 943
SspMI CTAG 1 cut(s) 1257
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 145, 700
TaiI ACGT 4 cut(s) 322, 387, 687, 826
TaqI TCGA 2 cut(s) 371, 901
TasI AATT 9 cut(s) 92, 223, 498, 677, 723, 1002, 1017, 1070, 1108
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 2 cut(s) 129, 890
Tru1I TTAA 3 cut(s) 516, 654, 1261
Tru9I TTAA 3 cut(s) 516, 654, 1261
TscAI CASTG 2 cut(s) 37, 794
TspDTI ATGAA 6 cut(s) 17, 499, 663, 761, 808, 974
TspGWI ACGGA 2 cut(s) 821, 1172
TspRI CASTG 2 cut(s) 37, 794
VpaK11BI GGWCC 4 cut(s) 294, 987, 1041, 1137
XapI RAATTY 2 cut(s) 223, 1070
XceI RCATGY 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 370
XspI CTAG 1 cut(s) 1257
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.