Prupe.1G167900_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13664422 .. 13665408
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G167900.1

Sequence Viewer

Length: 987 bp
ATGAGGAGAATTAAACGACGCCACCGCCACCGACCAACCAACAATAACAGACCTCCAAAACAAGAAGACGATGATGAAGAAGAAGAAGAGCATGATCAGAAACCCTACATTCTTCAATTGCCAGTCCACATAATAACAGAGATCTTCTGCAAAATCCCAACAAAAACTCTCATCCAATGCAAGCGCGTGTGTAAATCTTGGCGTTGTTGGTTCTCAGACGCTCAATTCACCAGAGAACTATTTTCACGAACACCCGCTTCCCTCTGGGTCACTGGCCACTTCTTGGTCGACCTCGACAGGATCGGGAGCCAAAGCGACGTCGTGTTGCAGCTTTTTAGTAATCTCAGAGCTCTTTGTATGACCGTTGTAGGCTCGTGCAATGGCTTCCTCTGTCACTACGATTTCAATTCTGACTTTACCCGTCATCTTCACATCTCCGATCCTGTTACCTGTACGTTTTTCTCTCTCCCAATACCTTCAAATCGTGATAATGGAGACTGTTATGGTTTTGGGTTCAGCCCCATTAGTGATGTTTATAAGCTAGTTCGGGTTTCGTCTCTAGGCGGAGAGCCTGACCAAGTAATGGTTTTGACTGTTGGCTCTGGAATTTGGAGAAACATTGGGCACCCTGGCTACTCATTTTATAGGGTAAATCCTCGTCATGGGATTTATCTCAATGGGGTTCTTCATTGGATTGGTCGCAGTTGTAGGGACAGGTCCCGGCGTTTGATATGTGTCTTTGATGTTGAAAGTGAGCGGTTCCAAGAGTTACCACTACCGCTTTCTTCTCAAAATCTGCGAAGAACATATTTTAAGCTCGGAATATTAAAAGGTTGGCTCTCTGTAATTCATAAAGTAAATGATGTTATCAGTGTTTGGGTGATGAAGGATTACGGGGTGAAGGAGTCTTGGACTAAAGAGCATGAGTTTAAAGAACCAGTTGGTTCTTTTGTCACTTCAACAATGAAATTTACTGACCAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

329

Amino Acids

38.12

Weight (kDa)

8.83

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AatII GACGTC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 624
AccB7I CCANNNNNTGG 2 cut(s) 283, 583
AccBSI CCGCTC 1 cut(s) 757
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 186
AciI CCGC 5 cut(s) 25, 255, 564, 757, 779
AclWI GGATC 2 cut(s) 308, 434
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 2 cut(s) 606, 968
AcyI GRCGYC 2 cut(s) 19, 318
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 3 cut(s) 283, 583, 662
AgsI TTSAA 5 cut(s) 116, 406, 480, 749, 960
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 4 cut(s) 331, 350, 541, 817
AluI AGCT 4 cut(s) 331, 350, 541, 817
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 2 cut(s) 489, 561
AlwI GGATC 2 cut(s) 308, 434
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 2 cut(s) 606, 968
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 717
AsuC2I CCSGG 1 cut(s) 721
AsuHPI GGTGA 3 cut(s) 220, 892, 910
AvaII GGWCC 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 627
BalI TGGCCA 1 cut(s) 276
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 352
BauI CACGAG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 630
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 489, 561
BfaI CTAG 2 cut(s) 542, 560
BglII AGATCT 1 cut(s) 141
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 2 cut(s) 630, 721
Bme18I GGWCC 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 4 cut(s) 308, 626, 719, 761
BmrFI CCNGG 2 cut(s) 630, 721
BpiI GAAGAC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 721
BsaHI GRCGYC 2 cut(s) 19, 318
BsaJI CCNNGG 2 cut(s) 628, 979
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 583, 662
Bse1I ACTGG 3 cut(s) 122, 277, 938
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 628, 979
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 283, 583, 662
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 228, 358
BseNI ACTGG 3 cut(s) 122, 277, 938
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 1 cut(s) 721
BslFI GGGAC 2 cut(s) 703, 725
BslI CCNNNNNNNGG 3 cut(s) 283, 583, 662
BsmAI GTCTC 2 cut(s) 489, 561
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 2 cut(s) 703, 725
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 352, 627
Bsp143I GATC 4 cut(s) 94, 141, 300, 439
BspACI CCGC 5 cut(s) 25, 255, 564, 757, 779
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 227, 357
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 4 cut(s) 308, 626, 719, 761
BspPI GGATC 2 cut(s) 308, 434
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 624
BsrBI CCGCTC 1 cut(s) 757
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 3 cut(s) 122, 277, 938
BssECI CCNNGG 2 cut(s) 628, 979
BssMI GATC 4 cut(s) 94, 141, 300, 439
BssNI GRCGYC 2 cut(s) 19, 318
BssSI CACGAG 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 979
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 3 cut(s) 364, 500, 595
Bst6I CTCTTC 1 cut(s) 81
BstACI GRCGYC 2 cut(s) 19, 318
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 214, 344
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 4 cut(s) 97, 144, 303, 442
BstMAI GTCTC 2 cut(s) 489, 561
BstMBI GATC 4 cut(s) 94, 141, 300, 439
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 628, 719
BstSLI GKGCMC 1 cut(s) 627
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 270, 877
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 717
CseI GACGC 2 cut(s) 27, 227
Csp6I GTAC 1 cut(s) 453
CviAII CATG 3 cut(s) 92, 662, 923
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 214, 344
DpnI GATC 4 cut(s) 96, 143, 302, 441
DpnII GATC 4 cut(s) 94, 141, 300, 439
DraI TTTAAA 1 cut(s) 931
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 979
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 717
Eco53kI GAGCTC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 717
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 979
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 3 cut(s) 95, 665, 926
FaqI GGGAC 2 cut(s) 703, 725
FatI CATG 3 cut(s) 91, 661, 922
FauI CCCGC 1 cut(s) 262
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 2 cut(s) 542, 560
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 329
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 721
HgaI GACGC 2 cut(s) 27, 227
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 2 cut(s) 19, 318
Hin1II CATG 3 cut(s) 95, 665, 926
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 1 cut(s) 905
HpaII CCGG 1 cut(s) 721
HphI GGTGA 3 cut(s) 220, 892, 910
Hpy166II GTNNAC 2 cut(s) 127, 289
Hpy188I TCNGA 6 cut(s) 99, 217, 347, 412, 439, 821
Hpy188III TCNNGA 4 cut(s) 246, 304, 485, 603
Hpy8I GTNNAC 2 cut(s) 127, 289
Hpy99I CGWCG 3 cut(s) 21, 320, 323
HpyAV CCTTC 3 cut(s) 486, 880, 895
HpyCH4III ACNGT 3 cut(s) 364, 500, 595
HpyCH4IV ACGT 2 cut(s) 318, 455
HpyCH4V TGCA 4 cut(s) 150, 180, 328, 378
HpyF3I CTNAG 2 cut(s) 214, 344
HpySE526I ACGT 2 cut(s) 318, 455
Hsp92I GRCGYC 2 cut(s) 19, 318
Hsp92II CATG 3 cut(s) 95, 665, 926
HspAI GCGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 141, 300, 439
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 306
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 2 cut(s) 542, 560
MaeII ACGT 2 cut(s) 318, 455
MaeIII GTNAC 5 cut(s) 268, 392, 445, 768, 952
MalI GATC 4 cut(s) 96, 143, 302, 441
MbiI CCGCTC 1 cut(s) 757
MboI GATC 4 cut(s) 94, 141, 300, 439
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 352, 627
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 7 cut(s) 9, 116, 224, 406, 606, 846, 968
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 914
MnlI CCTC 5 cut(s) 63, 272, 302, 398, 666
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MseI TTAA 4 cut(s) 12, 813, 827, 930
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 1 cut(s) 721
MspR9I CCNGG 2 cut(s) 630, 721
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 186
NciI CCSGG 1 cut(s) 721
NdeII GATC 4 cut(s) 94, 141, 300, 439
NlaIII CATG 3 cut(s) 95, 665, 926
NlaIV GGNNCC 4 cut(s) 308, 626, 719, 761
NmuCI GTSAC 3 cut(s) 268, 392, 952
PciSI GCTCTTC 1 cut(s) 81
PflMI CCANNNNNTGG 2 cut(s) 283, 583
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 913
PpuMI RGGWCCY 1 cut(s) 717
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 4 cut(s) 308, 626, 719, 761
PspPI GGNCC 1 cut(s) 717
PspPPI RGGWCCY 1 cut(s) 717
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SacI GAGCTC 1 cut(s) 352
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 4 cut(s) 12, 813, 827, 930
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 4 cut(s) 94, 141, 300, 439
Sau96I GGNCC 1 cut(s) 717
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 2 cut(s) 630, 721
SduI GDGCHC 2 cut(s) 352, 627
SinI GGWCC 1 cut(s) 717
Sse9I AATT 7 cut(s) 9, 116, 224, 406, 606, 846, 968
SsiI CCGC 5 cut(s) 25, 255, 564, 757, 779
SspI AATATT 1 cut(s) 825
SspMI CTAG 2 cut(s) 542, 560
SstI GAGCTC 1 cut(s) 352
StyD4I CCNGG 2 cut(s) 628, 719
StyI CCWWGG 1 cut(s) 979
TaaI ACNGT 3 cut(s) 364, 500, 595
TaiI ACGT 2 cut(s) 321, 458
TaqI TCGA 2 cut(s) 288, 294
TasI AATT 7 cut(s) 9, 116, 224, 406, 606, 846, 968
Tru1I TTAA 4 cut(s) 12, 813, 827, 930
Tru9I TTAA 4 cut(s) 12, 813, 827, 930
TscAI CASTG 2 cut(s) 277, 877
TseFI GTSAC 3 cut(s) 268, 392, 952
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 3 cut(s) 268, 392, 952
TspDTI ATGAA 5 cut(s) 90, 677, 839, 899, 980
TspRI CASTG 2 cut(s) 277, 877
Van91I CCANNNNNTGG 2 cut(s) 283, 583
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 2 cut(s) 606, 968
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 542, 560
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.