RLG00000008252

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000430
Physical Location & Seq
Forward (+)
27776081 .. 27779319
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008252

Sequence Viewer

Length: 1164 bp
ATGGCCTCCCATGAAACTATGAAAGTCCTTAAATTCCCTCCAACAACCCCATCGCCTTCACTACCAATCATGAAGAAACCCAAACTCTGCCCTATCCCCACTGATTCACCTCCATCACAACAACAACAACAAGAAGAAGACCCTAAACCCTTCGTCCTCCTATTGCCCAACCACATCACAGTCGAGATCTTCTCCAAACTCCCAATCACCAGTCTCATCCAATGCCGCTGCGTCTGCAAGTCATGGCGCCGTTCTCTCTCCGACCCCCACTTCGCTAGATACCTCCTCTCCCTCACGCCCCCCTCGCTTCTCATCAAACACCGCCGCAGCTTCTACCTGGTCGAGCCCTCCGTCCAAAACGGCGCCGTAATAAAGCTCGCCGAGGACCCTAGTTTCCTCAGCCCTTACCTCGATGTTGTGGGCTCCTGCAACGGCTTACTCGCCGTGAGGTATGGTCAATTCTACATTTCGAATCCGATTCTCGGTGAGTTTTTAACTCTTCCCAGGCCGAGGGGTAGAATCAATTGTTCATTTGTTTGTGGATTTGGGTTTAGTCCTGTGAGTAATGTATATAAGTTGGTTATGGCTTCGATTCCGAGGAAAGGGTCTGAGGGTGAGGTGGAGGTGATGGTTTTGACTGTTGGCTCTGGGATTTGGAGAAGCATTGGCAGCTCTGTATACCCTTGTTGGATTCAGTCATCTGGGGTTTATCTTAATGGAGTTATTCATTGGATTGTTGGGACTGGCAAGCTGAAGCTGAAGCTCGAGAACGCTTTTGTCATTTGTGCATTTGATGTTGAGAGCGAGCGTTTTGAGGAGTTACCATTACCGCCTGGTTCATTCCGTGCCGGGAAGGTTGAACTCGAGCTTGGTGTGTTGGGAGGTTGTCTCACTGTAAATGCTTGTTACAAGAATACAATCAGTGTTTGGGTGATGAAGGATTATGGTGTTGCAGAGTCTTGGACCAAAGAGTATGACATTAAAGACACACTTAGAGGCACATTTCGTTCTCATCCAAATGATGCCATTGGTCGTTCACGGGGCATGTGTTCATATTCCAAGCTTTGTTTCACTCAAACATGCGATTGCTGGTTAGAGTTCAGAGGGGATATTCAGAAAGAAGCAATTACCATGGGGACATTAATAGGAATTGCACAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

388

Amino Acids

43.06

Weight (kDa)

8.64

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 53 - 91 8.4e-10 F-box domain
F-box-like PF12937 54 - 91 2.6e-10 F-box-like
FBA_1 PF07734 124 - 326 7.1e-18 F-box associated beta propeller domain
FBA_3 PF08268 136 - 324 2.6e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 246, 362
AccI GTMKAC 1 cut(s) 678
AciI CCGC 4 cut(s) 226, 322, 325, 830
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 773, 779
AcyI GRCGYC 2 cut(s) 247, 363
AfiI CCNNNNNNNGG 3 cut(s) 482, 510, 602
AgsI TTSAA 1 cut(s) 860
AjnI CCWGG 3 cut(s) 336, 503, 832
AjuI GAANNNNNNNTTGG 4 cut(s) 852, 884, 1052, 1084
AluBI AGCT 8 cut(s) 330, 376, 672, 751, 757, 763, 868, 1063
AluI AGCT 8 cut(s) 330, 376, 672, 751, 757, 763, 868, 1063
Alw26I GTCTC 2 cut(s) 218, 893
Ama87I CYCGRG 2 cut(s) 764, 863
AoxI GGCC 2 cut(s) 3, 506
ApeKI GCWGC 3 cut(s) 228, 327, 669
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 1 cut(s) 1142
AspLEI GCGC 2 cut(s) 249, 365
AspS9I GGNCC 2 cut(s) 385, 963
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 6 cut(s) 99, 199, 497, 626, 637, 943
AsuII TTCGAA 1 cut(s) 470
AvaI CYCGRG 2 cut(s) 764, 863
AvaII GGWCC 2 cut(s) 385, 963
BanI GGYRCC 2 cut(s) 246, 362
BanII GRGCYC 2 cut(s) 348, 425
BbsI GAAGAC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 215, 339, 681
BccI CCATC 3 cut(s) 58, 121, 622
BceAI ACGGC 5 cut(s) 234, 350, 376, 428, 448
BciT130I CCWGG 3 cut(s) 338, 505, 834
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 218, 893
BfaI CTAG 3 cut(s) 276, 390, 1162
BfoI RGCGCY 2 cut(s) 250, 366
BglII AGATCT 1 cut(s) 186
BisI GCNGC 5 cut(s) 226, 229, 325, 328, 670
BlsI GCNGC 5 cut(s) 227, 230, 326, 329, 671
Bme1390I CCNGG 4 cut(s) 338, 505, 834, 850
Bme18I GGWCC 2 cut(s) 385, 963
BmeT110I CYCGRG 2 cut(s) 764, 863
BmgT120I GGNCC 2 cut(s) 385, 963
BmiI GGNNCC 4 cut(s) 248, 364, 387, 424
BmrFI CCNGG 4 cut(s) 338, 505, 834, 850
BmsI GCATC 1 cut(s) 1012
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 873, 905
Bpu10I CCTNAGC 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 850
BsaHI GRCGYC 2 cut(s) 247, 363
BsaJI CCNNGG 5 cut(s) 381, 503, 509, 596, 1131
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 510, 602
Bse1I ACTGG 2 cut(s) 210, 748
BseBI CCWGG 3 cut(s) 338, 505, 834
BseDI CCNNGG 5 cut(s) 381, 503, 509, 596, 1131
BseGI GGATG 2 cut(s) 216, 1012
BseLI CCNNNNNNNGG 3 cut(s) 482, 510, 602
BseMII CTCAG 2 cut(s) 412, 600
BseNI ACTGG 2 cut(s) 210, 748
BseRI GAGGAG 2 cut(s) 275, 830
BseXI GCAGC 3 cut(s) 215, 339, 681
BshFI GGCC 2 cut(s) 5, 508
BshNI GGYRCC 2 cut(s) 246, 362
BsiHKCI CYCGRG 2 cut(s) 764, 863
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 2 cut(s) 754, 1150
BslI CCNNNNNNNGG 3 cut(s) 482, 510, 602
BsmAI GTCTC 2 cut(s) 218, 893
BsmFI GGGAC 2 cut(s) 754, 1150
BsnI GGCC 2 cut(s) 5, 508
BsoBI CYCGRG 2 cut(s) 764, 863
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 348, 425
Bsp143I GATC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 1131
BspACI CCGC 4 cut(s) 226, 322, 325, 830
BspANI GGCC 2 cut(s) 5, 508
BspCNI CTCAG 2 cut(s) 411, 601
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 4 cut(s) 248, 364, 387, 424
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 2 cut(s) 246, 362
BsrI ACTGG 2 cut(s) 210, 748
BssECI CCNNGG 5 cut(s) 381, 503, 509, 596, 1131
BssMI GATC 1 cut(s) 186
BssNAI GTATAC 1 cut(s) 679
BssNI GRCGYC 2 cut(s) 247, 363
BssT1I CCWWGG 1 cut(s) 1131
Bst1107I GTATAC 1 cut(s) 679
Bst2UI CCWGG 3 cut(s) 338, 505, 834
Bst4CI ACNGT 3 cut(s) 181, 640, 895
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 2 cut(s) 247, 363
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 378, 749, 806
BstDEI CTNAG 3 cut(s) 398, 609, 992
BstDSI CCRYGG 1 cut(s) 1131
BstF5I GGATG 2 cut(s) 216, 1012
BstH2I RGCGCY 2 cut(s) 250, 366
BstHHI GCGC 2 cut(s) 249, 365
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 2 cut(s) 218, 893
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 234, 304, 669
BstNI CCWGG 3 cut(s) 338, 505, 834
BstNSI RCATGY 2 cut(s) 1048, 1083
BstSCI CCNGG 4 cut(s) 336, 503, 832, 848
BstV1I GCAGC 3 cut(s) 215, 339, 681
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 679
BsuRI GGCC 2 cut(s) 5, 508
BtgI CCRYGG 1 cut(s) 1131
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 216, 1012
BtsIMutI CAGTG 3 cut(s) 99, 891, 928
Cac8I GCNNGC 3 cut(s) 378, 749, 806
CciI TCATGA 1 cut(s) 69
CfoI GCGC 2 cut(s) 249, 365
Cfr13I GGNCC 2 cut(s) 385, 963
CseI GACGC 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 336
CviAII CATG 6 cut(s) 11, 70, 243, 1045, 1080, 1132
DdeI CTNAG 3 cut(s) 398, 609, 992
DinI GGCGCC 2 cut(s) 248, 364
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 1131
Eco24I GRGCYC 2 cut(s) 348, 425
Eco47I GGWCC 2 cut(s) 385, 963
Eco57I CTGAAG 2 cut(s) 773, 779
Eco88I CYCGRG 2 cut(s) 764, 863
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 336, 503, 832
EcoT14I CCWWGG 1 cut(s) 1131
EcoT38I GRGCYC 2 cut(s) 348, 425
EgeI GGCGCC 2 cut(s) 248, 364
EheI GGCGCC 2 cut(s) 248, 364
ErhI CCWWGG 1 cut(s) 1131
FaeI CATG 6 cut(s) 14, 73, 246, 1048, 1083, 1135
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 2 cut(s) 754, 1150
FatI CATG 6 cut(s) 10, 69, 242, 1044, 1079, 1131
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 226, 229, 325, 328, 670
FokI GGATG 2 cut(s) 203, 999
FriOI GRGCYC 2 cut(s) 348, 425
Fsp4HI GCNGC 5 cut(s) 226, 229, 325, 328, 670
FspBI CTAG 3 cut(s) 276, 390, 1162
GlaI GCGC 2 cut(s) 248, 364
GluI GCNGC 5 cut(s) 226, 229, 325, 328, 670
HaeII RGCGCY 2 cut(s) 250, 366
HaeIII GGCC 2 cut(s) 5, 508
HapII CCGG 1 cut(s) 849
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 249, 365
Hin1I GRCGYC 2 cut(s) 247, 363
Hin1II CATG 6 cut(s) 14, 73, 246, 1048, 1083, 1135
Hin6I GCGC 2 cut(s) 247, 363
HinP1I GCGC 2 cut(s) 247, 363
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 7 cut(s) 104, 472, 478, 519, 592, 691, 956
HpaII CCGG 1 cut(s) 849
HphI GGTGA 6 cut(s) 99, 199, 497, 626, 637, 943
Hpy166II GTNNAC 2 cut(s) 679, 1037
Hpy188I TCNGA 6 cut(s) 262, 477, 597, 610, 1103, 1116
Hpy188III TCNNGA 3 cut(s) 70, 184, 766
Hpy8I GTNNAC 2 cut(s) 679, 1037
HpyAV CCTTC 4 cut(s) 66, 160, 847, 931
HpyCH4III ACNGT 3 cut(s) 181, 640, 895
HpyCH4V TGCA 5 cut(s) 237, 429, 788, 953, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 304, 669
HpyF3I CTNAG 3 cut(s) 398, 609, 992
Hsp92I GRCGYC 2 cut(s) 247, 363
Hsp92II CATG 6 cut(s) 14, 73, 246, 1048, 1083, 1135
HspAI GCGC 2 cut(s) 247, 363
KasI GGCGCC 2 cut(s) 246, 362
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 3 cut(s) 215, 339, 681
LweI GCATC 1 cut(s) 1012
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 3 cut(s) 276, 390, 1162
MaeIII GTNAC 2 cut(s) 819, 905
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 5 cut(s) 85, 146, 149, 181, 491
MfeI CAATTG 1 cut(s) 523
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 348, 425
MluCI AATT 5 cut(s) 32, 458, 523, 1125, 1149
Mly113I GGCGCC 2 cut(s) 247, 363
MlyI GAGTC 1 cut(s) 965
MmeI TCCRAC 3 cut(s) 65, 285, 668
MseI TTAA 5 cut(s) 30, 494, 714, 981, 1142
MslI CAYNNNNRTG 1 cut(s) 1017
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 4 cut(s) 338, 505, 834, 850
MunI CAATTG 1 cut(s) 523
MvaI CCWGG 3 cut(s) 338, 505, 834
MwoI GCNNNNNNNGC 3 cut(s) 234, 304, 669
NarI GGCGCC 2 cut(s) 247, 363
NciI CCSGG 1 cut(s) 850
NcoI CCATGG 1 cut(s) 1131
NdeII GATC 1 cut(s) 186
NlaIII CATG 6 cut(s) 14, 73, 246, 1048, 1083, 1135
NlaIV GGNNCC 4 cut(s) 248, 364, 387, 424
NmeAIII GCCGAG 2 cut(s) 406, 534
NspI RCATGY 2 cut(s) 1048, 1083
NspV TTCGAA 1 cut(s) 470
PaeR7I CTCGAG 2 cut(s) 764, 863
PagI TCATGA 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PfeI GAWTC 6 cut(s) 104, 472, 478, 519, 592, 691
PkrI GCNGC 5 cut(s) 227, 230, 326, 329, 671
PleI GAGTC 1 cut(s) 964
PluTI GGCGCC 2 cut(s) 250, 366
PpsI GAGTC 1 cut(s) 964
PpuMI RGGWCCY 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 1142
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 336, 503, 832
PspGI CCWGG 3 cut(s) 336, 503, 832
PspN4I GGNNCC 4 cut(s) 248, 364, 387, 424
PspPI GGNCC 2 cut(s) 385, 963
PspPPI RGGWCCY 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 863
PsuI RGATCY 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 1017
SaqAI TTAA 5 cut(s) 30, 494, 714, 981, 1142
SatI GCNGC 5 cut(s) 226, 229, 325, 328, 670
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 2 cut(s) 385, 963
SchI GAGTC 1 cut(s) 965
ScrFI CCNGG 4 cut(s) 338, 505, 834, 850
SduI GDGCHC 2 cut(s) 348, 425
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 1 cut(s) 1012
SfoI GGCGCC 2 cut(s) 248, 364
Sfr274I CTCGAG 2 cut(s) 764, 863
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 2 cut(s) 385, 963
SlaI CTCGAG 2 cut(s) 764, 863
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 2 cut(s) 764, 863
SmoI CTYRAG 2 cut(s) 764, 863
Sse9I AATT 5 cut(s) 32, 458, 523, 1125, 1149
SsiI CCGC 4 cut(s) 226, 322, 325, 830
SspDI GGCGCC 2 cut(s) 246, 362
SspMI CTAG 3 cut(s) 276, 390, 1162
StyD4I CCNGG 4 cut(s) 336, 503, 832, 848
StyI CCWWGG 1 cut(s) 1131
TaaI ACNGT 3 cut(s) 181, 640, 895
TaqI TCGA 7 cut(s) 183, 342, 411, 470, 590, 765, 864
TasI AATT 5 cut(s) 32, 458, 523, 1125, 1149
TauI GCSGC 2 cut(s) 228, 327
TfiI GAWTC 6 cut(s) 104, 472, 478, 519, 592, 691
Tru1I TTAA 5 cut(s) 30, 494, 714, 981, 1142
Tru9I TTAA 5 cut(s) 30, 494, 714, 981, 1142
TscAI CASTG 3 cut(s) 106, 898, 928
TseI GCWGC 3 cut(s) 228, 327, 669
TspDTI ATGAA 8 cut(s) 27, 35, 86, 519, 716, 828, 950, 1041
TspGWI ACGGA 2 cut(s) 340, 833
TspRI CASTG 3 cut(s) 106, 898, 928
VpaK11BI GGWCC 2 cut(s) 385, 963
VspI ATTAAT 1 cut(s) 1142
XapI RAATTY 1 cut(s) 32
XceI RCATGY 2 cut(s) 1048, 1083
XhoI CTCGAG 2 cut(s) 764, 863
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 3 cut(s) 276, 390, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.