Rmu_sc0002072.1_g000048

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002072.1
OG0000430
Physical Location & Seq
Reverse (-)
181321 .. 181813
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002072.1_g000048.1.cds

Sequence Viewer

Length: 450 bp
atgagcctttatacccctgcaacaaggtcccttgtgagggttcaaattgatgggataccttacaatgctaaaaaggctatgattatcagggattacatctccaagcatccagaggaagtagctgaaacatctgatataaaaatacctgcatggacaactagtgttgcgggatggggaaagaaagatgaaagcgaggtagttgagattccaagacggcagcctaccccatgccttccgctcccaaaggaccttaaacatgtaagtgcagctacagcttccacgctactggatatgattagtggtttgaatgtccttctattgcataagtgcatggtaggaaaggatgagatcaaaaggctcaggaaggagaatgaagagctccgtgcaagtgtaaagctgctttcgggaaggccgggtgaaggtgattttgtacagggggaggataactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.55

Weight (kDa)

7.76

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 2 cut(s) 167, 236
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 3 cut(s) 36, 37, 419
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 2 cut(s) 44, 307
AhlI ACTAGT 1 cut(s) 158
AluBI AGCT 5 cut(s) 122, 269, 275, 379, 397
AluI AGCT 5 cut(s) 122, 269, 275, 379, 397
Alw21I GWGCWC 1 cut(s) 381
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 3 cut(s) 217, 266, 397
AspS9I GGNCC 2 cut(s) 27, 247
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 428, 434
AvaII GGWCC 2 cut(s) 27, 247
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 229, 278, 384
BccI CCATC 2 cut(s) 44, 165
BceAI ACGGC 1 cut(s) 230
BciVI GTATCC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 414
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 159, 448
BfmI CTRYAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 218, 267, 398
BlsI GCNGC 3 cut(s) 219, 268, 399
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 2 cut(s) 27, 247
BmgT120I GGNCC 2 cut(s) 27, 247
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 37, 419
Bse1I ACTGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 106, 176, 349
BseLI CCNNNNNNNGG 3 cut(s) 36, 37, 419
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 229, 278, 384
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 3 cut(s) 36, 37, 419
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 2 cut(s) 167, 236
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 1 cut(s) 291
BssMI GATC 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 3 cut(s) 106, 176, 349
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 2 cut(s) 74, 272
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 229, 278, 384
BstXI CCANNNNNNTGG 1 cut(s) 286
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 3 cut(s) 106, 176, 349
BveI ACCTGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 27, 247
Csp6I GTAC 1 cut(s) 431
CviAII CATG 4 cut(s) 150, 228, 257, 331
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 27, 247
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 2 cut(s) 27, 247
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 4 cut(s) 153, 231, 260, 334
FaiI YATR 9 cut(s) 12, 80, 137, 151, 229, 258, 293, 324, 332
FaqI GGGAC 1 cut(s) 13
FatI CATG 4 cut(s) 149, 227, 256, 330
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 218, 267, 398
FokI GGATG 3 cut(s) 93, 183, 356
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 3 cut(s) 218, 267, 398
FspBI CTAG 2 cut(s) 159, 448
GluI GCNGC 3 cut(s) 218, 267, 398
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 413
Hin1II CATG 4 cut(s) 153, 231, 260, 334
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 428, 434
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 3 cut(s) 110, 361, 405
HpyAV CCTTC 5 cut(s) 242, 323, 358, 402, 413
HpyCH4V TGCA 6 cut(s) 20, 149, 266, 322, 330, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 272
HpyF3I CTNAG 1 cut(s) 359
Hsp92II CATG 4 cut(s) 153, 231, 260, 334
Kzo9I GATC 1 cut(s) 348
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 243, 384
LpnPI CCDG 8 cut(s) 30, 73, 123, 159, 272, 346, 419, 426
Lsp1109I GCAGC 3 cut(s) 229, 278, 384
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 159, 448
MalI GATC 1 cut(s) 350
MbiI CCGCTC 1 cut(s) 238
MboI GATC 1 cut(s) 348
MboII GAAGA 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 1 cut(s) 45
MnlI CCTC 4 cut(s) 30, 106, 187, 433
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 74, 272
NciI CCSGG 1 cut(s) 414
NdeII GATC 1 cut(s) 348
NlaIII CATG 4 cut(s) 153, 231, 260, 334
NlaIV GGNNCC 1 cut(s) 29
NspI RCATGY 1 cut(s) 260
PciI ACATGT 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 219, 268, 399
PpuMI RGGWCCY 2 cut(s) 27, 247
PscI ACATGT 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 381
Psp5II RGGWCCY 2 cut(s) 27, 247
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 27, 247
PspPPI RGGWCCY 2 cut(s) 27, 247
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 218, 267, 398
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 2 cut(s) 27, 247
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 2 cut(s) 27, 247
SmiMI CAYNNNNRTG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 1 cut(s) 45
SsiI CCGC 2 cut(s) 167, 236
SspMI CTAG 2 cut(s) 159, 448
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 412
TasI AATT 1 cut(s) 45
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 3 cut(s) 217, 266, 397
TspDTI ATGAA 2 cut(s) 201, 387
TspGWI ACGGA 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 27, 247
XceI RCATGY 1 cut(s) 260
XspI CTAG 2 cut(s) 159, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.