RLG00000026909

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000430
Physical Location & Seq
Reverse (-)
6914682 .. 6916603
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026909

Sequence Viewer

Length: 642 bp
ATGCATTATATTGAAGTTCTGAAACTTATAAAGGGGAAAAGAGCTCCAAAAAAAGCTTTAGTGTTGGAGGACTCTAGATTGAGCCTTTATATCCCTGCAGCAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATGCCTTGCATTGCTAGGAAGGATGTGGCAGGTGTCCATACTCCAAGCTTTGTTTCACCTAAACACATTATCAGGGATTACATCTCCAAGCACCCAGAGGAAGTAGCTGAAACATCTGATATAAAAATACCAGCATGGACAACTAGTGTTGTGGGATGGGGAGAGAACGACGAAAGCGAGGTAGTTGAGATTCCAAGAGGCCAGCCTACCCCATGCCTGCCGCTCCCAAGGAACCTTAAACATGTAAGTGCAGCTACAGCTTCAACGCTACTGGATATGATTAGTGGCTTGAATGCCCTTCTATTGCATAAGTGCATGGTAGGGAAGGATGAGATCAAAAGGCTTAGGAAGGAGAATGAAGAGCTCCGTGCAAGTGTAAAGCTGCTTTCGGAAGGCCAGATGATGGTGAAGGTAGGTGAAGAAGCACACTTGGATTATATGCCCCTGCAGTTCAAGAAGCTAACCCGTTTCAAAATGTATGGCTCTTGGCTAAAGGCCGATTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.86

Weight (kDa)

9.17

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 535
AccBSI CCGCTC 1 cut(s) 355
AciI CCGC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 114, 115, 535
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 6 cut(s) 14, 122, 396, 424, 586, 604
AhlI ACTAGT 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 9 cut(s) 44, 56, 180, 239, 386, 392, 496, 514, 592
AluI AGCT 9 cut(s) 44, 56, 180, 239, 386, 392, 496, 514, 592
Alw21I GWGCWC 2 cut(s) 46, 498
AoxI GGCC 3 cut(s) 331, 526, 627
ApeKI GCWGC 3 cut(s) 98, 383, 514
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 3 cut(s) 180, 550, 560
AvaII GGWCC 1 cut(s) 105
BanII GRGCYC 2 cut(s) 46, 498
Bbv12I GWGCWC 2 cut(s) 46, 498
BbvI GCAGC 3 cut(s) 110, 395, 501
BccI CCATC 3 cut(s) 122, 282, 529
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 3 cut(s) 75, 147, 276
BfmI CTRYAG 3 cut(s) 96, 387, 578
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 4 cut(s) 99, 353, 384, 515
BlsI GCNGC 4 cut(s) 100, 354, 385, 516
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 107, 365
BmsI GCATC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 115, 535
Bse1I ACTGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 4 cut(s) 138, 160, 293, 466
BseLI CCNNNNNNNGG 3 cut(s) 114, 115, 535
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 408
BseXI GCAGC 3 cut(s) 110, 395, 501
BsgI GTGCAG 1 cut(s) 402
BshFI GGCC 3 cut(s) 333, 528, 629
BsiHKAI GWGCWC 2 cut(s) 46, 498
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 114, 115, 535
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 3 cut(s) 333, 528, 629
Bsp1286I GDGCHC 2 cut(s) 46, 498
Bsp143I GATC 1 cut(s) 465
BspACI CCGC 1 cut(s) 353
BspANI GGCC 3 cut(s) 333, 528, 629
BspLI GGNNCC 2 cut(s) 107, 365
BspMAI CTGCAG 2 cut(s) 100, 582
BspMI ACCTGC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 335, 350
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 4 cut(s) 138, 160, 293, 466
BstKTI GATC 1 cut(s) 468
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 377
BstSFI CTRYAG 3 cut(s) 96, 387, 578
BstV1I GCAGC 3 cut(s) 110, 395, 501
BsuRI GGCC 3 cut(s) 333, 528, 629
BtsCI GGATG 4 cut(s) 138, 160, 293, 466
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 335, 350
Cfr13I GGNCC 1 cut(s) 105
CviAII CATG 4 cut(s) 267, 345, 374, 448
DdeI CTNAG 1 cut(s) 476
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Ecl136II GAGCTC 2 cut(s) 44, 496
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 2 cut(s) 46, 498
Eco47I GGWCC 1 cut(s) 105
Eco53kI GAGCTC 2 cut(s) 44, 496
EcoICRI GAGCTC 2 cut(s) 44, 496
EcoO109I RGGNCCY 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 46, 498
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 4 cut(s) 270, 348, 377, 451
FaqI GGGAC 1 cut(s) 91
FatI CATG 4 cut(s) 266, 344, 373, 447
Fnu4HI GCNGC 4 cut(s) 99, 353, 384, 515
FokI GGATG 4 cut(s) 145, 167, 300, 473
FriOI GRGCYC 2 cut(s) 46, 498
Fsp4HI GCNGC 4 cut(s) 99, 353, 384, 515
FspBI CTAG 3 cut(s) 75, 147, 276
GluI GCNGC 4 cut(s) 99, 353, 384, 515
HaeIII GGCC 3 cut(s) 333, 528, 629
Hin1II CATG 4 cut(s) 270, 348, 377, 451
HindIII AAGCTT 2 cut(s) 54, 178
HinfI GANTC 3 cut(s) 71, 322, 632
HphI GGTGA 3 cut(s) 180, 550, 560
Hpy188I TCNGA 3 cut(s) 21, 250, 523
Hpy188III TCNNGA 3 cut(s) 75, 586, 636
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 6 cut(s) 145, 440, 451, 475, 518, 535
HpyCH4V TGCA 8 cut(s) 4, 98, 141, 383, 439, 447, 503, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 4 cut(s) 270, 348, 377, 451
Kzo9I GATC 1 cut(s) 465
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 3 cut(s) 49, 360, 501
Lsp1109I GCAGC 3 cut(s) 110, 395, 501
LweI GCATC 1 cut(s) 123
MaeI CTAG 3 cut(s) 75, 147, 276
MalI GATC 1 cut(s) 467
MbiI CCGCTC 1 cut(s) 355
MboI GATC 1 cut(s) 465
MboII GAAGA 2 cut(s) 503, 563
MhlI GDGCHC 2 cut(s) 46, 498
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 61, 108, 223, 304, 323
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 1 cut(s) 465
NlaIII CATG 4 cut(s) 270, 348, 377, 451
NlaIV GGNNCC 2 cut(s) 107, 365
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 377
PaqCI CACCTGC 1 cut(s) 152
PciI ACATGT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 322, 632
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 4 cut(s) 100, 354, 385, 516
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 105
PscI ACATGT 1 cut(s) 373
PsiI TTATAA 1 cut(s) 29
Psp124BI GAGCTC 2 cut(s) 46, 498
Psp5II RGGWCCY 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 107, 365
PspPI GGNCC 1 cut(s) 105
PspPPI RGGWCCY 1 cut(s) 105
PstI CTGCAG 2 cut(s) 100, 582
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 2 cut(s) 46, 498
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 99, 353, 384, 515
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 2 cut(s) 46, 498
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 3 cut(s) 96, 387, 578
SinI GGWCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 378
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 353
SspMI CTAG 3 cut(s) 75, 147, 276
SstI GAGCTC 2 cut(s) 46, 498
StyI CCWWGG 1 cut(s) 359
TasI AATT 1 cut(s) 123
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 2 cut(s) 322, 632
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseI GCWGC 3 cut(s) 98, 383, 514
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 105
XbaI TCTAGA 1 cut(s) 74
XceI RCATGY 1 cut(s) 377
XspI CTAG 3 cut(s) 75, 147, 276
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.