Rh1BG384500

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000430
Physical Location & Seq
Forward (+)
51257831 .. 51258836
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG384500.1

Sequence Viewer

Length: 465 bp
ATGACAATAGGGGATGACACATGTTGGGGGGGTCCTCTATCCAAGCATTATATTGAAGTTCTGAAACTTATAAAGGGGAAAAAGGCTCCGAAAAAAGCTTTACTGCTAGACAACTTTAGATTGAGCCTTTATACCCCTGCAACAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATACCTTACATTGCTAGGAAGGCTATGGTAGGTGTCCATATTCCAAGCTTTGTTTCACCCAAAGAGATTATCAGGGATTACATCTCCAAGGTAAGTGCAGCTACAGCTTCCACGCTACTGGATATGATTAGTGGTTTGAATGCCCTTCTATTGCATAAGTGCATGGTGGGAAAGGATGAGATCAAAAGGCTCAGGAAGGAGAATGAAGACCTTCGTGCAAGTGTAAAGCTGCTTTCGGGAAGGCCGGGTGAAGGTGATTTTGTACAGGAGGAGGATAACTACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

154

Amino Acids

17.17

Weight (kDa)

9.04

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 3 cut(s) 156, 157, 425
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 3 cut(s) 56, 164, 313
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AluBI AGCT 5 cut(s) 98, 222, 275, 281, 403
AluI AGCT 5 cut(s) 98, 222, 275, 281, 403
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 272, 403
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 32, 147
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 3 cut(s) 222, 434, 440
AvaII GGWCC 2 cut(s) 32, 147
BbsI GAAGAC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 284, 390
BccI CCATC 1 cut(s) 164
BciVI GTATCC 1 cut(s) 168
BcnI CCSGG 1 cut(s) 420
BfaI CTAG 2 cut(s) 107, 189
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 2 cut(s) 273, 404
BlsI GCNGC 2 cut(s) 274, 405
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 32, 147
BmgT120I GGNCC 2 cut(s) 32, 147
BmiI GGNNCC 3 cut(s) 33, 87, 149
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 157, 425
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 19, 355
BseLI CCNNNNNNNGG 3 cut(s) 156, 157, 425
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 2 cut(s) 284, 390
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 156, 157, 425
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 418
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 1 cut(s) 354
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 33, 87, 149
BsrDI GCAATG 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 436
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 261
BstAUI TGTACA 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 19, 355
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 194, 278
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 284, 390
BstV2I GAAGAC 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 292
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 19, 355
Cfr13I GGNCC 2 cut(s) 32, 147
Csp6I GTAC 1 cut(s) 437
CviAII CATG 2 cut(s) 21, 337
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 1 cut(s) 365
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 32, 147
EcoO109I RGGNCCY 2 cut(s) 32, 147
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 24, 340
FaiI YATR 9 cut(s) 22, 51, 71, 132, 200, 213, 299, 330, 338
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 20, 336
Fnu4HI GCNGC 2 cut(s) 273, 404
FokI GGATG 2 cut(s) 26, 362
Fsp4HI GCNGC 2 cut(s) 273, 404
FspBI CTAG 2 cut(s) 107, 189
GluI GCNGC 2 cut(s) 273, 404
HaeIII GGCC 1 cut(s) 418
HapII CCGG 1 cut(s) 419
Hin1II CATG 2 cut(s) 24, 340
HindIII AAGCTT 2 cut(s) 96, 220
HpaII CCGG 1 cut(s) 419
HphI GGTGA 3 cut(s) 222, 434, 440
Hpy188I TCNGA 2 cut(s) 63, 90
Hpy188III TCNNGA 2 cut(s) 367, 411
HpyAV CCTTC 6 cut(s) 187, 329, 364, 395, 408, 419
HpyCH4V TGCA 5 cut(s) 140, 272, 328, 336, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 278
HpyF3I CTNAG 1 cut(s) 365
Hsp92II CATG 2 cut(s) 24, 340
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 150, 232, 278, 352, 425, 432
Lsp1109I GCAGC 2 cut(s) 284, 390
MaeI CTAG 2 cut(s) 107, 189
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 392
MluCI AATT 1 cut(s) 165
MnlI CCTC 4 cut(s) 45, 150, 436, 439
MroXI GAANNNNTTC 1 cut(s) 384
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 194, 278
NciI CCSGG 1 cut(s) 420
NdeII GATC 1 cut(s) 354
NlaIII CATG 2 cut(s) 24, 340
NlaIV GGNNCC 3 cut(s) 33, 87, 149
NspI RCATGY 1 cut(s) 24
PciI ACATGT 1 cut(s) 20
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 384
PkrI GCNGC 2 cut(s) 274, 405
PpuMI RGGWCCY 2 cut(s) 32, 147
PscI ACATGT 1 cut(s) 20
PsiI TTATAA 1 cut(s) 71
Psp5II RGGWCCY 2 cut(s) 32, 147
PspN4I GGNNCC 3 cut(s) 33, 87, 149
PspPI GGNCC 2 cut(s) 32, 147
PspPPI RGGWCCY 2 cut(s) 32, 147
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SatI GCNGC 2 cut(s) 273, 404
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 2 cut(s) 32, 147
ScrFI CCNGG 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 32, 147
Sse9I AATT 1 cut(s) 165
SspMI CTAG 2 cut(s) 107, 189
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 261
TasI AATT 1 cut(s) 165
TatI WGTACW 1 cut(s) 436
TseI GCWGC 2 cut(s) 272, 403
TspDTI ATGAA 1 cut(s) 393
VpaK11BI GGWCC 2 cut(s) 32, 147
XceI RCATGY 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 107, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.