Rh7AG137700

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000430
Physical Location & Seq
Forward (+)
11011275 .. 11011742
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG137700.1

Sequence Viewer

Length: 465 bp
ATGAACCCAACCAAAGTTTGCCGGCGCCACCCATCGGCGCCCAACAACAAAGAACAACAAGAGAAACCCTCATGCAATATTCTAAAACTACCAATGGATTTAACAGAGGAGATCTTGCACAGACTCCCAGGCAAATCACTCGTCCAGTGCAAGTACGTGTGCTCGTCTTGGCGTTGCCGGCTCCTAAACCCGCACTTTACCAAACCCCTACTCCCACGAAGACGTGGCTGCCTCTTGATCCGTGGCTTCACCGACCTCACAAACCCTCGCACCAGCGGCACCTTCTTGATCTATCTTGACAAGAAAGACTACTCGAAGCCAAACGGCGAGATTGCACTGAAGCTTCCGAGGGATCCGAACCCCCCACCTGTTGGTCTAGCCACTGTAGGTTCGTGCGACGGCCTCCTCTGGCTAGTTGATTTACTTGCCTCCTCAATATTATATATCAAATCCCATTACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

154

Amino Acids

17.51

Weight (kDa)

9.65

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 67 1.3e-07 F-box domain
F-box-like PF12937 27 - 60 8.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 24, 37, 278
AccB7I CCANNNNNTGG 1 cut(s) 371
AciI CCGC 2 cut(s) 191, 276
AclWI GGATC 3 cut(s) 232, 347, 360
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 2 cut(s) 25, 38
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 34, 371, 459
AflIII ACRYGT 1 cut(s) 156
AgeI ACCGGT 1 cut(s) 459
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 3 cut(s) 232, 347, 360
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AsiGI ACCGGT 1 cut(s) 459
AspLEI GCGC 2 cut(s) 27, 40
AsuHPI GGTGA 1 cut(s) 241
BamHI GGATCC 1 cut(s) 352
BanI GGYRCC 3 cut(s) 24, 37, 278
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 40
BceAI ACGGC 2 cut(s) 340, 415
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 2 cut(s) 377, 413
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 2 cut(s) 28, 41
BglII AGATCT 1 cut(s) 111
BisI GCNGC 2 cut(s) 229, 277
BlsI GCNGC 2 cut(s) 230, 278
Bme1390I CCNGG 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 224
BmiI GGNNCC 5 cut(s) 26, 39, 182, 280, 354
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BsaAI YACGTR 1 cut(s) 157
BsaHI GRCGYC 2 cut(s) 25, 38
BsaJI CCNNGG 3 cut(s) 127, 241, 347
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 371, 459
Bse118I RCCGGY 3 cut(s) 21, 177, 459
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 127, 241, 347
BseLI CCNNNNNNNGG 3 cut(s) 34, 371, 459
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 3 cut(s) 122, 395, 421
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 402
BshNI GGYRCC 3 cut(s) 24, 37, 278
BshTI ACCGGT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 3 cut(s) 22, 178, 460
BslI CCNNNNNNNGG 3 cut(s) 34, 371, 459
BsnI GGCC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 111, 237, 288, 352
BspACI CCGC 2 cut(s) 191, 276
BspANI GGCC 1 cut(s) 402
BspLI GGNNCC 5 cut(s) 26, 39, 182, 280, 354
BspPI GGATC 3 cut(s) 232, 347, 360
BspT107I GGYRCC 3 cut(s) 24, 37, 278
BsrFI RCCGGY 3 cut(s) 21, 177, 459
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 3 cut(s) 21, 177, 459
BssECI CCNNGG 3 cut(s) 127, 241, 347
BssMI GATC 4 cut(s) 111, 237, 288, 352
BssNI GRCGYC 2 cut(s) 25, 38
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 385
BstACI GRCGYC 2 cut(s) 25, 38
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 23, 179
BstDSI CCRYGG 1 cut(s) 241
BstH2I RGCGCY 2 cut(s) 28, 41
BstHHI GCGC 2 cut(s) 27, 40
BstKTI GATC 4 cut(s) 114, 240, 291, 355
BstMBI GATC 4 cut(s) 111, 237, 288, 352
BstMWI GCNNNNNNNGC 2 cut(s) 178, 276
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 2 cut(s) 111, 352
BstYI RGATCY 2 cut(s) 111, 352
BsuRI GGCC 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 224
BtsIMutI CAGTG 3 cut(s) 152, 335, 381
Cac8I GCNNGC 2 cut(s) 23, 179
CfoI GCGC 2 cut(s) 27, 40
Cfr10I RCCGGY 3 cut(s) 21, 177, 459
Csp6I GTAC 1 cut(s) 154
CspAI ACCGGT 1 cut(s) 459
CviAII CATG 1 cut(s) 72
CviJI RGCY 8 cut(s) 181, 228, 246, 319, 343, 380, 402, 412
CviKI_1 RGCY 8 cut(s) 181, 228, 246, 319, 343, 380, 402, 412
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 2 cut(s) 26, 39
DpnI GATC 4 cut(s) 113, 239, 290, 354
DpnII GATC 4 cut(s) 111, 237, 288, 352
Eco57I CTGAAG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 127
EgeI GGCGCC 2 cut(s) 26, 39
EheI GGCGCC 2 cut(s) 26, 39
FaeI CATG 1 cut(s) 75
FaiI YATR 3 cut(s) 73, 442, 444
FatI CATG 1 cut(s) 71
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 229, 277
Fsp4HI GCNGC 2 cut(s) 229, 277
FspBI CTAG 2 cut(s) 377, 413
GlaI GCGC 2 cut(s) 26, 39
GluI GCNGC 2 cut(s) 229, 277
HaeII RGCGCY 2 cut(s) 28, 41
HaeIII GGCC 1 cut(s) 402
HapII CCGG 3 cut(s) 22, 178, 460
HhaI GCGC 2 cut(s) 27, 40
Hin1I GRCGYC 2 cut(s) 25, 38
Hin1II CATG 1 cut(s) 75
Hin6I GCGC 2 cut(s) 25, 38
HinP1I GCGC 2 cut(s) 25, 38
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 1 cut(s) 123
HpaII CCGG 3 cut(s) 22, 178, 460
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 348, 357
Hpy188III TCNNGA 3 cut(s) 235, 286, 296
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 156, 223
HpyCH4V TGCA 4 cut(s) 75, 118, 150, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 276
HpySE526I ACGT 2 cut(s) 156, 223
Hsp92I GRCGYC 2 cut(s) 25, 38
Hsp92II CATG 1 cut(s) 75
HspAI GCGC 2 cut(s) 25, 38
KasI GGCGCC 2 cut(s) 24, 37
KroI GCCGGC 2 cut(s) 21, 177
KroNI GCCGGC 2 cut(s) 23, 179
Kzo9I GATC 4 cut(s) 111, 237, 288, 352
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 8 cut(s) 35, 114, 141, 158, 191, 286, 381, 394
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 2 cut(s) 377, 413
MaeII ACGT 2 cut(s) 156, 223
MalI GATC 4 cut(s) 113, 239, 290, 354
MboI GATC 4 cut(s) 111, 237, 288, 352
MboII GAAGA 1 cut(s) 231
MflI RGATCY 2 cut(s) 111, 352
MhlI GDGCHC 1 cut(s) 164
Mly113I GGCGCC 2 cut(s) 25, 38
MlyI GAGTC 1 cut(s) 117
MroNI GCCGGC 2 cut(s) 21, 177
MseI TTAA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 3 cut(s) 22, 178, 460
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 178, 276
NaeI GCCGGC 2 cut(s) 23, 179
NarI GGCGCC 2 cut(s) 25, 38
NdeII GATC 4 cut(s) 111, 237, 288, 352
NgoMIV GCCGGC 2 cut(s) 21, 177
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 5 cut(s) 26, 39, 182, 280, 354
PdiI GCCGGC 2 cut(s) 23, 179
PflMI CCANNNNNTGG 1 cut(s) 371
PinAI ACCGGT 1 cut(s) 459
PkrI GCNGC 2 cut(s) 230, 278
PleI GAGTC 1 cut(s) 117
PluTI GGCGCC 2 cut(s) 28, 41
PpsI GAGTC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 5 cut(s) 26, 39, 182, 280, 354
PsuI RGATCY 2 cut(s) 111, 352
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 2 cut(s) 229, 277
Sau3AI GATC 4 cut(s) 111, 237, 288, 352
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 164
SetI ASST 7 cut(s) 159, 226, 258, 284, 345, 370, 391
SfcI CTRYAG 1 cut(s) 384
SfoI GGCGCC 2 cut(s) 26, 39
SsiI CCGC 2 cut(s) 191, 276
SspDI GGCGCC 2 cut(s) 24, 37
SspI AATATT 2 cut(s) 79, 438
SspMI CTAG 2 cut(s) 377, 413
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 159, 226
TaqI TCGA 1 cut(s) 314
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 3 cut(s) 152, 342, 388
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 3 cut(s) 152, 342, 388
Van91I CCANNNNNTGG 1 cut(s) 371
XspI CTAG 2 cut(s) 377, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.