Rmu_co8499129.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8499129.1
OG0000430
Physical Location & Seq
Reverse (-)
1768 .. 2866
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8499129.1_g000001.1.cds

Sequence Viewer

Length: 1099 bp
acaacaacaacaacaacaacaagaccctaaacccttcatcctcctattgcccaaccacatcacagtcgagatcttctccaaactcccaatcaccactctcatccaatgccgctgcgtctgcaagtcatggagacattctctctccgacccccacttcgcccgatacctcctctccctcacgcccccttcgcttctcatcaagcgctgccgcagcttctacctggtcgagccccacgtccgaaacggcgccgtaataaagctcgccgaggaccctaatgacctcaccccttacctcgacgttgtgggctcctgcaatggcttactcgccgtcaggtataacagtggtcagttctacatttcgaatccgattctcggtgagtttttaactcttcccaggccgaggggtagaatcaattgttcatttgtttgtggatttgggtttagtcctgtgagtaatgtatataagttggttatggcttcgattccgaagaaagggtctgagggtgaggtggaggtgatggttttgactgttggctctggaatttggagaagcattggcagctctgtatacccttgttggattcagtcatctggggtttatcttaatggagttattcattggattgttggaactggcaagctgaagctgaagcttgagaacgcttttgtcatttgtgcatttgatgttgagagcgagcgtttcgaggagttaccattaccgcttggttcattccgtgccgggaaggttgaactcgagcttggtgtgttgggaggttgtctcactgtaaatgcttgttacaagaatacaatcagtgtttgggtgatgaaggattatggtgttgcagagtcttggaccaaagagtatgacattaaagacaaacttagaggcacatttcgttctcatccaaatgtacctcgagtattgagagttacagaggaggggcacgtattgttgttttttaagcatgagctgcaggttcatagtcttggtaaaaggggccttgtcaggcttgaggttgacaggatgccattggtcgttcacggggcatgtgtgcatagtccaagctttgtttcactcaaacatgcgattgctggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

365

Amino Acids

40.79

Weight (kDa)

9.02

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 568
AciI CCGC 3 cut(s) 110, 209, 720
AcsI RAATTY 1 cut(s) 541
AcuI CTGAAG 2 cut(s) 663, 669
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 1 cut(s) 913
AfeI AGCGCT 1 cut(s) 204
AfiI CCNNNNNNNGG 3 cut(s) 372, 400, 492
AgsI TTSAA 1 cut(s) 750
AjiI CACGTC 1 cut(s) 236
AjnI CCWGG 2 cut(s) 220, 393
AjuI GAANNNNNNNTTGG 4 cut(s) 742, 774, 1055, 1087
AluBI AGCT 9 cut(s) 214, 260, 562, 641, 647, 653, 758, 971, 1066
AluI AGCT 9 cut(s) 214, 260, 562, 641, 647, 653, 758, 971, 1066
Alw26I GTCTC 2 cut(s) 125, 783
Ama87I CYCGRG 2 cut(s) 753, 916
Aor51HI AGCGCT 1 cut(s) 204
AoxI GGCC 2 cut(s) 396, 998
ApeKI GCWGC 5 cut(s) 112, 205, 211, 559, 971
ApoI RAATTY 1 cut(s) 541
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 480, 512
AspLEI GCGC 2 cut(s) 205, 249
AspS9I GGNCC 3 cut(s) 269, 853, 998
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 6 cut(s) 83, 275, 387, 516, 527, 833
AsuII TTCGAA 1 cut(s) 360
AvaI CYCGRG 2 cut(s) 753, 916
AvaII GGWCC 2 cut(s) 269, 853
BaeGI GKGCMC 1 cut(s) 946
BanI GGYRCC 1 cut(s) 246
BanII GRGCYC 2 cut(s) 232, 309
BbvI GCAGC 5 cut(s) 99, 192, 223, 571, 958
BccI CCATC 1 cut(s) 512
BceAI ACGGC 3 cut(s) 234, 260, 312
BciT130I CCWGG 2 cut(s) 222, 395
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 2 cut(s) 125, 783
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 2 cut(s) 206, 250
BfuAI ACCTGC 1 cut(s) 965
BglII AGATCT 1 cut(s) 70
BisI GCNGC 7 cut(s) 110, 113, 206, 209, 212, 560, 972
BlsI GCNGC 7 cut(s) 111, 114, 207, 210, 213, 561, 973
Bme1390I CCNGG 3 cut(s) 222, 395, 740
Bme18I GGWCC 2 cut(s) 269, 853
BmeT110I CYCGRG 2 cut(s) 753, 916
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 269, 853, 998
BmiI GGNNCC 4 cut(s) 248, 271, 308, 999
BmrFI CCNGG 3 cut(s) 222, 395, 740
BmsI GCATC 1 cut(s) 1015
BplI GAGNNNNNCTC 6 cut(s) 60, 92, 122, 154, 763, 795
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 675, 1032
BpuMI CCSGG 1 cut(s) 740
BsaAI YACGTR 1 cut(s) 947
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 265, 393, 399
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 400, 492
Bse1I ACTGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 222, 395
BseDI CCNNGG 3 cut(s) 265, 393, 399
BseGI GGATG 4 cut(s) 37, 100, 902, 1030
BseLI CCNNNNNNNGG 3 cut(s) 372, 400, 492
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 490
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 3 cut(s) 159, 720, 951
BseSI GKGCMC 1 cut(s) 946
BseXI GCAGC 5 cut(s) 99, 192, 223, 571, 958
BshFI GGCC 2 cut(s) 398, 1000
BshNI GGYRCC 1 cut(s) 246
BsiHKCI CYCGRG 2 cut(s) 753, 916
BsiSI CCGG 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 372, 400, 492
BsmAI GTCTC 2 cut(s) 125, 783
BsnI GGCC 2 cut(s) 398, 1000
BsoBI CYCGRG 2 cut(s) 753, 916
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 3 cut(s) 232, 309, 946
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 3 cut(s) 110, 209, 720
BspANI GGCC 2 cut(s) 398, 1000
BspCNI CTCAG 1 cut(s) 491
BspLI GGNNCC 4 cut(s) 248, 271, 308, 999
BspMAI CTGCAG 1 cut(s) 976
BspMI ACCTGC 1 cut(s) 965
BspT104I TTCGAA 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 3 cut(s) 265, 393, 399
BssMI GATC 1 cut(s) 70
BssNAI GTATAC 1 cut(s) 569
BssNI GRCGYC 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 569
Bst2UI CCWGG 2 cut(s) 222, 395
Bst4CI ACNGT 4 cut(s) 65, 342, 530, 785
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 247
BstAPI GCANNNNNTGC 1 cut(s) 971
BstBAI YACGTR 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 262, 639, 696
BstDEI CTNAG 2 cut(s) 499, 882
BstF5I GGATG 4 cut(s) 37, 100, 902, 1030
BstH2I RGCGCY 2 cut(s) 206, 250
BstHHI GCGC 2 cut(s) 205, 249
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 125, 783
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 5 cut(s) 118, 188, 211, 559, 971
BstNI CCWGG 2 cut(s) 222, 395
BstNSI RCATGY 2 cut(s) 1051, 1086
BstSCI CCNGG 3 cut(s) 220, 393, 738
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 946
BstV1I GCAGC 5 cut(s) 99, 192, 223, 571, 958
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BstZ17I GTATAC 1 cut(s) 569
BsuRI GGCC 2 cut(s) 398, 1000
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 4 cut(s) 37, 100, 902, 1030
BtsIMutI CAGTG 3 cut(s) 347, 781, 818
BveI ACCTGC 1 cut(s) 965
Cac8I GCNNGC 3 cut(s) 262, 639, 696
CfoI GCGC 2 cut(s) 205, 249
Cfr13I GGNCC 3 cut(s) 269, 853, 998
CseI GACGC 1 cut(s) 104
CsiI ACCWGGT 1 cut(s) 220
Csp6I GTAC 1 cut(s) 912
CviAII CATG 4 cut(s) 127, 966, 1048, 1083
CviQI GTAC 1 cut(s) 912
DdeI CTNAG 2 cut(s) 499, 882
DinI GGCGCC 1 cut(s) 248
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco24I GRGCYC 2 cut(s) 232, 309
Eco47I GGWCC 2 cut(s) 269, 853
Eco47III AGCGCT 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 663, 669
Eco88I CYCGRG 2 cut(s) 753, 916
EcoO109I RGGNCCY 2 cut(s) 269, 998
EcoRII CCWGG 2 cut(s) 220, 393
EcoT38I GRGCYC 2 cut(s) 232, 309
EgeI GGCGCC 1 cut(s) 248
EheI GGCGCC 1 cut(s) 248
FaeI CATG 4 cut(s) 130, 969, 1051, 1086
FalI AAGNNNNNCTT 2 cut(s) 865, 897
FatI CATG 4 cut(s) 126, 965, 1047, 1082
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 7 cut(s) 110, 113, 206, 209, 212, 560, 972
FokI GGATG 4 cut(s) 24, 87, 889, 1037
FriOI GRGCYC 2 cut(s) 232, 309
Fsp4HI GCNGC 7 cut(s) 110, 113, 206, 209, 212, 560, 972
GlaI GCGC 2 cut(s) 204, 248
GluI GCNGC 7 cut(s) 110, 113, 206, 209, 212, 560, 972
HaeII RGCGCY 2 cut(s) 206, 250
HaeIII GGCC 2 cut(s) 398, 1000
HapII CCGG 1 cut(s) 739
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 205, 249
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 4 cut(s) 130, 969, 1051, 1086
Hin6I GCGC 2 cut(s) 203, 247
HinP1I GCGC 2 cut(s) 203, 247
HincII GTYRAC 1 cut(s) 1019
HindII GTYRAC 1 cut(s) 1019
HindIII AAGCTT 2 cut(s) 651, 1064
HinfI GANTC 6 cut(s) 362, 368, 409, 482, 581, 846
HpaII CCGG 1 cut(s) 739
HphI GGTGA 6 cut(s) 83, 275, 387, 516, 527, 833
Hpy166II GTNNAC 3 cut(s) 569, 1019, 1040
Hpy188I TCNGA 5 cut(s) 146, 240, 367, 487, 500
Hpy188III TCNNGA 2 cut(s) 68, 538
Hpy8I GTNNAC 3 cut(s) 569, 1019, 1040
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 4 cut(s) 44, 196, 737, 821
HpyCH4III ACNGT 4 cut(s) 65, 342, 530, 785
HpyCH4IV ACGT 3 cut(s) 235, 298, 946
HpyCH4V TGCA 6 cut(s) 121, 313, 678, 843, 974, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 188, 211, 559, 971
HpyF3I CTNAG 2 cut(s) 499, 882
HpySE526I ACGT 3 cut(s) 235, 298, 946
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 4 cut(s) 130, 969, 1051, 1086
HspAI GCGC 2 cut(s) 203, 247
KasI GGCGCC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 5 cut(s) 99, 192, 223, 571, 958
LweI GCATC 1 cut(s) 1015
MabI ACCWGGT 1 cut(s) 220
MaeII ACGT 3 cut(s) 235, 298, 946
MaeIII GTNAC 3 cut(s) 709, 795, 929
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 65, 381, 500
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 232, 309, 946
MluCI AATT 2 cut(s) 413, 541
Mly113I GGCGCC 1 cut(s) 247
MlyI GAGTC 1 cut(s) 855
MmeI TCCRAC 3 cut(s) 169, 558, 608
MseI TTAA 4 cut(s) 384, 604, 871, 961
MslI CAYNNNNRTG 1 cut(s) 907
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 739
MspR9I CCNGG 3 cut(s) 222, 395, 740
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 2 cut(s) 222, 395
MwoI GCNNNNNNNGC 5 cut(s) 118, 188, 211, 559, 971
NarI GGCGCC 1 cut(s) 247
NciI CCSGG 1 cut(s) 740
NdeII GATC 1 cut(s) 70
NlaIII CATG 4 cut(s) 130, 969, 1051, 1086
NlaIV GGNNCC 4 cut(s) 248, 271, 308, 999
NmeAIII GCCGAG 2 cut(s) 290, 424
NspI RCATGY 2 cut(s) 1051, 1086
NspV TTCGAA 1 cut(s) 360
PaeR7I CTCGAG 2 cut(s) 753, 916
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PfeI GAWTC 5 cut(s) 362, 368, 409, 482, 581
PkrI GCNGC 7 cut(s) 111, 114, 207, 210, 213, 561, 973
PleI GAGTC 1 cut(s) 854
PluTI GGCGCC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 854
Ppu21I YACGTR 1 cut(s) 947
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 220, 393
PspGI CCWGG 2 cut(s) 220, 393
PspN4I GGNNCC 4 cut(s) 248, 271, 308, 999
PspPI GGNCC 3 cut(s) 269, 853, 998
PspPPI RGGWCCY 1 cut(s) 269
PspXI VCTCGAGB 2 cut(s) 753, 916
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 913
RsaNI GTAC 1 cut(s) 912
RseI CAYNNNNRTG 1 cut(s) 907
SaqAI TTAA 4 cut(s) 384, 604, 871, 961
SatI GCNGC 7 cut(s) 110, 113, 206, 209, 212, 560, 972
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 3 cut(s) 269, 853, 998
SchI GAGTC 1 cut(s) 855
ScrFI CCNGG 3 cut(s) 222, 395, 740
SduI GDGCHC 3 cut(s) 232, 309, 946
SexAI ACCWGGT 1 cut(s) 220
SfaNI GCATC 1 cut(s) 1015
SfcI CTRYAG 1 cut(s) 972
SfoI GGCGCC 1 cut(s) 248
Sfr274I CTCGAG 2 cut(s) 753, 916
SfuI TTCGAA 1 cut(s) 360
SinI GGWCC 2 cut(s) 269, 853
SlaI CTCGAG 2 cut(s) 753, 916
SmiMI CAYNNNNRTG 1 cut(s) 907
SmlI CTYRAG 4 cut(s) 654, 753, 916, 1011
SmoI CTYRAG 4 cut(s) 654, 753, 916, 1011
Sse9I AATT 2 cut(s) 413, 541
SsiI CCGC 3 cut(s) 110, 209, 720
SspDI GGCGCC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 220, 393, 738
TaaI ACNGT 4 cut(s) 65, 342, 530, 785
TaiI ACGT 3 cut(s) 238, 301, 949
TaqI TCGA 8 cut(s) 67, 226, 295, 360, 480, 703, 754, 917
TasI AATT 2 cut(s) 413, 541
TauI GCSGC 2 cut(s) 112, 211
TfiI GAWTC 5 cut(s) 362, 368, 409, 482, 581
Tru1I TTAA 4 cut(s) 384, 604, 871, 961
Tru9I TTAA 4 cut(s) 384, 604, 871, 961
TscAI CASTG 3 cut(s) 347, 788, 818
TseI GCWGC 5 cut(s) 112, 205, 211, 559, 971
TspDTI ATGAA 6 cut(s) 26, 409, 606, 718, 840, 969
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 3 cut(s) 347, 788, 818
VpaK11BI GGWCC 2 cut(s) 269, 853
XapI RAATTY 1 cut(s) 541
XceI RCATGY 2 cut(s) 1051, 1086
XhoI CTCGAG 2 cut(s) 753, 916
XmiI GTMKAC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.