RchiOBHm_Chr3g0474071

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000430
Physical Location & Seq
Reverse (-)
19818834 .. 19819646
813 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43972

Sequence Viewer

Length: 813 bp
ATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGCCATAATCGTAAAATTGATGCTTTCATTTTTAACATATCCAATCCCATTACCGGCGAGTCTGTACCTCTTCCAGTCAATAAAGAAATAGGCCGTCCAGCTCACTTTGGGTTTGGGTATAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACATCCAATGAAGTTAATAAACATCGCTTTTGTTGTCAATTGGACGTGATGGTTTTGACTGTTGGCTCTGTGATTTGGAGAAGAATTGGCAAAGTATCCAATGACATGCATGGAACACGAGAAGGGGTCTTTCATAATGGATTTCTTCACTGGGTTTGTCGCTGTACGGAGGGTTTTTTCATACGTGCATTTGATGTTGAACGCGAGGGTTTCAAGGATTTACCAATGCCCCCTTATTATTTCCATCCCGATTCTATACCTCGAATGCGAGTCTTAGGAGGTTCACTTTCTGTAAGTGATGGCCGCACGCTTTGGGTAATGAAAGAGTACGGCGTCAAGAGGTCTTGGACCAAAGAGCTTGAAATTGGACATGATACAATTTATCCTAATGACCCATATGGGTCCTATATACGATGTGTTTCAGTTTTGAAATTTACAGAGGGGAAGGTTTTGTTGTTAGCAAACACTAATTTGTGCCTCTATACTCCAGAAACAAGGACCCTTGTGAGGGTTGAGATTGATGGGATGCCATCAGGGGGCTTCCGTTTCGTGGCAGACCATATTCCGAGCTTTGTTTCTCCGAAGGATATTATCAAGGATTACCTCTCCAAAGTACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

270

Amino Acids

30.69

Weight (kDa)

8.73

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 3 - 245 7.6e-23 F-box associated beta propeller domain
FBA_1 PF07734 3 - 254 1.5e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 393
AciI CCGC 2 cut(s) 34, 493
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 4 cut(s) 99, 355, 518, 804
AfiI CCNNNNNNNGG 5 cut(s) 86, 696, 697, 725, 739
AgsI TTSAA 4 cut(s) 389, 403, 551, 619
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 3 cut(s) 134, 547, 759
AluI AGCT 3 cut(s) 134, 547, 759
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 124, 490
ApoI RAATTY 1 cut(s) 620
AspS9I GGNCC 3 cut(s) 537, 591, 687
AvaII GGWCC 3 cut(s) 537, 591, 687
BamHI GGATCC 1 cut(s) 5
BauI CACGAG 1 cut(s) 306
BccI CCATC 5 cut(s) 232, 441, 482, 704, 727
BceAI ACGGC 2 cut(s) 111, 535
BciVI GTATCC 1 cut(s) 295
BfaI CTAG 1 cut(s) 807
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 1 cut(s) 493
BlsI GCNGC 1 cut(s) 494
Bme18I GGWCC 3 cut(s) 537, 591, 687
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 537, 591, 687
BmiI GGNNCC 3 cut(s) 7, 592, 689
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 43, 705
BmuI ACTGGG 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 660
BsaAI YACGTR 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 522
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 696, 697, 725, 739
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 107, 344
Bse3DI GCAATG 1 cut(s) 19
BseGI GGATG 3 cut(s) 191, 433, 720
BseLI CCNNNNNNNGG 5 cut(s) 86, 696, 697, 725, 739
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 107, 344
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 126, 492
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 5 cut(s) 86, 696, 697, 725, 739
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 459
BsnI GGCC 2 cut(s) 126, 492
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 2 cut(s) 34, 493
BspANI GGCC 2 cut(s) 126, 492
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 7, 592, 689
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 107, 344
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 1 cut(s) 5
BssNI GRCGYC 1 cut(s) 522
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 522
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 1 cut(s) 463
BstF5I GGATG 3 cut(s) 191, 433, 720
BstFNI CGCG 1 cut(s) 393
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 2 cut(s) 24, 33
BstNSI RCATGY 1 cut(s) 298
BstUI CGCG 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 2 cut(s) 126, 492
BtgZI GCGATG 1 cut(s) 197
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 3 cut(s) 191, 433, 720
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 537, 591, 687
CseI GACGC 1 cut(s) 511
Csp6I GTAC 4 cut(s) 98, 354, 517, 803
CviAII CATG 3 cut(s) 295, 299, 560
CviJI RGCY 8 cut(s) 18, 126, 134, 255, 492, 547, 729, 759
CviKI_1 RGCY 8 cut(s) 18, 126, 134, 255, 492, 547, 729, 759
CviQI GTAC 4 cut(s) 98, 354, 517, 803
DdeI CTNAG 1 cut(s) 463
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 537, 591, 687
EcoO109I RGGNCCY 2 cut(s) 591, 687
EcoT22I ATGCAT 1 cut(s) 300
FaeI CATG 3 cut(s) 298, 302, 563
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 294, 298, 559
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 493
FokI GGATG 3 cut(s) 178, 420, 727
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 1 cut(s) 807
GluI GCNGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 2 cut(s) 126, 492
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 3 cut(s) 298, 302, 563
HinfI GANTC 3 cut(s) 92, 440, 459
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 189, 473
Hpy188I TCNGA 2 cut(s) 756, 771
Hpy188III TCNNGA 3 cut(s) 437, 526, 677
Hpy8I GTNNAC 2 cut(s) 189, 473
HpyAV CCTTC 3 cut(s) 305, 628, 766
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 234, 373
HpyCH4V TGCA 3 cut(s) 12, 298, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 33
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 2 cut(s) 234, 373
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 3 cut(s) 298, 302, 563
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 7 cut(s) 22, 100, 120, 144, 325, 690, 708
LweI GCATC 2 cut(s) 43, 705
MaeI CTAG 1 cut(s) 807
MaeII ACGT 2 cut(s) 234, 373
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 3 cut(s) 95, 282, 326
MfeI CAATTG 1 cut(s) 227
MflI RGATCY 1 cut(s) 5
MluCI AATT 7 cut(s) 48, 227, 273, 552, 567, 620, 658
MlyI GAGTC 2 cut(s) 101, 468
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 3 cut(s) 66, 204, 811
MspI CCGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 459
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 24, 33
NdeI CATATG 1 cut(s) 586
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 298, 302, 563
NlaIV GGNNCC 3 cut(s) 7, 592, 689
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 298
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 2 cut(s) 100, 467
PpsI GAGTC 2 cut(s) 100, 467
Ppu21I YACGTR 1 cut(s) 374
PpuMI RGGWCCY 2 cut(s) 591, 687
Psp5II RGGWCCY 2 cut(s) 591, 687
PspN4I GGNNCC 3 cut(s) 7, 592, 689
PspPI GGNCC 3 cut(s) 537, 591, 687
PspPPI RGGWCCY 2 cut(s) 591, 687
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 4 cut(s) 99, 355, 518, 804
RsaNI GTAC 4 cut(s) 98, 354, 517, 803
SaqAI TTAA 3 cut(s) 66, 204, 811
SatI GCNGC 1 cut(s) 493
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 3 cut(s) 537, 591, 687
SchI GAGTC 2 cut(s) 101, 468
SfaNI GCATC 2 cut(s) 43, 705
SinI GGWCC 3 cut(s) 537, 591, 687
Sse9I AATT 7 cut(s) 48, 227, 273, 552, 567, 620, 658
SsiI CCGC 2 cut(s) 34, 493
SspMI CTAG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 237, 376
TaqI TCGA 1 cut(s) 451
TasI AATT 7 cut(s) 48, 227, 273, 552, 567, 620, 658
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 66, 204, 811
Tru9I TTAA 3 cut(s) 66, 204, 811
TscAI CASTG 1 cut(s) 344
TspDTI ATGAA 5 cut(s) 49, 213, 311, 358, 524
TspGWI ACGGA 2 cut(s) 371, 722
TspRI CASTG 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 537, 591, 687
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 298
XspI CTAG 1 cut(s) 807
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.