Prupe.1G168000_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13678224 .. 13680388
2165 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G168000.1

Sequence Viewer

Length: 1167 bp
ATGAAGAGAAATAAACGAGCGCCAACCAACAGAAACAGACCCCCAAATCAAGAAGACGACGACGATGAAGAAGAGCATGATCAGAAACCCTACCTTCTGCATTTGCCAGAGCACATAATAATGGAGATCTTCTGCAAAATCCCAACAAAAACCCTCATCCAATGCAAGCGCGTGTGCAAGTCTTGGCGTTCTTGGCTCTCGGACCCTCAATTCACCAAAGAACTATTTTCACGAACACCCGCTTGCCTCTTGGTCACTGGCGTCCGCTCGCGCTGGGGCCACTTCTTGGTCGACCTCGACAGGGCCGGGTGGCAAAACGACGTCGCCTTGAAGCTTTTCAGTATAAGAAGTCTCCGAACTCTTTGTATGACCATTGTAGGCTCGTGCAATGGCTTCCTCTGTCACTACGAAGCCCATTTTGACTTGAGCCGTCATCTTCACATCTCCAATCCAGTTACTGGTGAGTTTTTATCTCTCCCAACACCTCCAAATCCTGATAGACGTGACTGTTATGGTTTTGGGTTCAGCCCCATCAGTGAGGTCTACAAGCTAGTTCGGGTTTTGTCTCCATACGGAAAGCCTGACCAACCTGACCAAGTAATGGTTTTGACTGTTGGCTCTGGCATTTGGAGAAACATTGGGCATCCTGCCTACTCTTTTGATGGTGTAACTCCTCATGGGATTTATATCAATGGGTTTATTCATTGGATTGGTCACAGTAGTAGTGACTGTTCCCGTTTGGTATGTGCCTTTGATGTCGAAAGCGAGCAGTTCCAAGAGTTACCACTGCCCCCTTGTATTTATGATCTGGATGAAACTTATTTTAAGCTCGGAGTATTGAAAGGTTGGCTCTCTGTAATTCTTAACTTGAATGATGATATCATTGTTTGGGTGATGAAGGATTATGGAATGAAGGAGTCTTGGACTAAAGAGCACGAGTTTAAAAATCCAGTTGGTTTTTTTGGCATTTCAGTATTGAATTTTACTGAGGAAGGGCAAGTCTTGGGGTTACATCGTAATCGATTGCAGGCTTATGCTCTGGTAACAAAGGGCCTTGTGAGGGTTGAGGTTGATCAATTACCTTCAGTGGTTTCGGAGGCATGGGACCTTGTTCCGAGCTTTGTTTCGCTTAAGGATATCGCCAGAGGGCAGCTTGAAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

389

Amino Acids

44.42

Weight (kDa)

6.27

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccB7I CCANNNNNTGG 3 cut(s) 286, 458, 601
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 2 cut(s) 291, 543
AccII CGCG 2 cut(s) 171, 271
AciI CCGC 2 cut(s) 240, 265
AcsI RAATTY 1 cut(s) 979
AcuI CTGAAG 1 cut(s) 1068
AcyI GRCGYC 2 cut(s) 261, 321
AfiI CCNNNNNNNGG 5 cut(s) 286, 301, 458, 601, 1060
AflII CTTAAG 1 cut(s) 1130
AgsI TTSAA 5 cut(s) 331, 841, 871, 979, 1157
AjiI CACGTC 1 cut(s) 503
AluBI AGCT 5 cut(s) 334, 550, 829, 1119, 1153
AluI AGCT 5 cut(s) 334, 550, 829, 1119, 1153
Alw21I GWGCWC 2 cut(s) 114, 936
Alw26I GTCTC 2 cut(s) 356, 570
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 3 cut(s) 277, 303, 1051
ApeKI GCWGC 1 cut(s) 1150
ApoI RAATTY 1 cut(s) 979
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 3 cut(s) 22, 171, 273
AspS9I GGNCC 5 cut(s) 202, 277, 303, 1051, 1105
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 205, 473, 904
AvaII GGWCC 2 cut(s) 202, 1105
BauI CACGAG 2 cut(s) 382, 935
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 114, 936
BbvI GCAGC 1 cut(s) 1162
BccI CCATC 2 cut(s) 539, 656
BceAI ACGGC 1 cut(s) 414
BclI TGATCA 2 cut(s) 79, 1072
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 356, 570
BfaI CTAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 23
BfrI CTTAAG 1 cut(s) 1130
BglII AGATCT 1 cut(s) 126
BisI GCNGC 1 cut(s) 1151
BlsI GCNGC 1 cut(s) 1152
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 2 cut(s) 202, 1105
BmgBI CACGTC 1 cut(s) 503
BmgT120I GGNCC 5 cut(s) 202, 277, 303, 1051, 1105
BmiI GGNNCC 3 cut(s) 204, 278, 1106
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 1021
BsaBI GATNNNNATC 1 cut(s) 686
BsaHI GRCGYC 2 cut(s) 261, 321
Bsc4I CCNNNNNNNGG 5 cut(s) 286, 301, 458, 601, 1060
Bse1I ACTGG 4 cut(s) 262, 452, 463, 950
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 686
BseCI ATCGAT 1 cut(s) 1021
BseGI GGATG 3 cut(s) 156, 643, 817
BseJI GATNNNNATC 1 cut(s) 686
BseLI CCNNNNNNNGG 5 cut(s) 286, 301, 458, 601, 1060
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 978
BseNI ACTGG 4 cut(s) 262, 452, 463, 950
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 1 cut(s) 1162
BseYI CCCAGC 1 cut(s) 273
Bsh1236I CGCG 2 cut(s) 171, 271
BshFI GGCC 3 cut(s) 279, 305, 1053
BshVI ATCGAT 1 cut(s) 1021
BsiHKAI GWGCWC 2 cut(s) 114, 936
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 1118
BslI CCNNNNNNNGG 5 cut(s) 286, 301, 458, 601, 1060
BsmAI GTCTC 2 cut(s) 356, 570
BsmFI GGGAC 1 cut(s) 1118
BsnI GGCC 3 cut(s) 279, 305, 1053
Bsp1286I GDGCHC 2 cut(s) 114, 936
Bsp143I GATC 4 cut(s) 79, 126, 805, 1072
BspACI CCGC 2 cut(s) 240, 265
BspANI GGCC 3 cut(s) 279, 305, 1053
BspCNI CTCAG 1 cut(s) 979
BspDI ATCGAT 1 cut(s) 1021
BspFNI CGCG 2 cut(s) 171, 271
BspLI GGNNCC 3 cut(s) 204, 278, 1106
BspQI GCTCTTC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 1130
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 4 cut(s) 262, 452, 463, 950
BssMI GATC 4 cut(s) 79, 126, 805, 1072
BssNI GRCGYC 2 cut(s) 261, 321
BssSI CACGAG 2 cut(s) 382, 935
Bst2BI CACGAG 2 cut(s) 382, 935
Bst4CI ACNGT 4 cut(s) 509, 613, 719, 731
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 261, 321
BstAFI CTTAAG 1 cut(s) 1130
BstC8I GCNNGC 5 cut(s) 167, 244, 269, 767, 1029
BstDEI CTNAG 1 cut(s) 987
BstF5I GGATG 3 cut(s) 156, 643, 817
BstFNI CGCG 2 cut(s) 171, 271
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 3 cut(s) 22, 171, 273
BstKTI GATC 4 cut(s) 82, 129, 808, 1075
BstMAI GTCTC 2 cut(s) 356, 570
BstMBI GATC 4 cut(s) 79, 126, 805, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 2 cut(s) 171, 271
BstV1I GCAGC 1 cut(s) 1162
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 1021
BsuRI GGCC 3 cut(s) 279, 305, 1053
BsuTUI ATCGAT 1 cut(s) 1021
BtrI CACGTC 1 cut(s) 503
BtsCI GGATG 3 cut(s) 156, 643, 817
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 4 cut(s) 255, 541, 785, 1092
Cac8I GCNNGC 5 cut(s) 167, 244, 269, 767, 1029
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 3 cut(s) 22, 171, 273
Cfr13I GGNCC 5 cut(s) 202, 277, 303, 1051, 1105
ClaI ATCGAT 1 cut(s) 1021
CseI GACGC 1 cut(s) 250
CviAII CATG 3 cut(s) 77, 677, 1101
DdeI CTNAG 1 cut(s) 987
DpnI GATC 4 cut(s) 81, 128, 807, 1074
DpnII GATC 4 cut(s) 79, 126, 805, 1072
DraI TTTAAA 1 cut(s) 943
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco32I GATATC 2 cut(s) 880, 1138
Eco47I GGWCC 2 cut(s) 202, 1105
Eco57I CTGAAG 1 cut(s) 1068
EcoO109I RGGNCCY 2 cut(s) 1051, 1105
EcoRV GATATC 2 cut(s) 880, 1138
FaeI CATG 3 cut(s) 80, 680, 1104
FaqI GGGAC 1 cut(s) 1118
FatI CATG 3 cut(s) 76, 676, 1100
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 2 cut(s) 79, 1072
FblI GTMKAC 2 cut(s) 291, 543
Fnu4HI GCNGC 1 cut(s) 1151
FokI GGATG 3 cut(s) 143, 630, 824
Fsp4HI GCNGC 1 cut(s) 1151
FspBI CTAG 1 cut(s) 551
GlaI GCGC 3 cut(s) 21, 170, 272
GluI GCNGC 1 cut(s) 1151
GsaI CCCAGC 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 3 cut(s) 279, 305, 1053
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 250
HhaI GCGC 3 cut(s) 22, 171, 273
Hin1I GRCGYC 2 cut(s) 261, 321
Hin1II CATG 3 cut(s) 80, 680, 1104
Hin6I GCGC 3 cut(s) 20, 169, 271
HinP1I GCGC 3 cut(s) 20, 169, 271
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 1 cut(s) 917
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 205, 473, 904
Hpy166II GTNNAC 2 cut(s) 292, 544
Hpy188I TCNGA 6 cut(s) 84, 202, 356, 833, 1096, 1116
Hpy188III TCNNGA 4 cut(s) 50, 231, 494, 809
Hpy8I GTNNAC 2 cut(s) 292, 544
Hpy99I CGWCG 4 cut(s) 62, 65, 323, 326
HpyAV CCTTC 6 cut(s) 104, 892, 907, 986, 1092, 1151
HpyCH4III ACNGT 4 cut(s) 509, 613, 719, 731
HpyCH4IV ACGT 2 cut(s) 321, 502
HpyCH4V TGCA 6 cut(s) 100, 135, 165, 177, 387, 1027
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 987
HpySE526I ACGT 2 cut(s) 321, 502
Hsp92I GRCGYC 2 cut(s) 261, 321
Hsp92II CATG 3 cut(s) 80, 680, 1104
HspAI GCGC 3 cut(s) 20, 169, 271
Ksp22I TGATCA 2 cut(s) 79, 1072
Kzo9I GATC 4 cut(s) 79, 126, 805, 1072
LguI GCTCTTC 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 1162
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 551
MaeII ACGT 2 cut(s) 321, 502
MalI GATC 4 cut(s) 81, 128, 807, 1074
MbiI CCGCTC 1 cut(s) 267
MboI GATC 4 cut(s) 79, 126, 805, 1072
MboII GAAGA 6 cut(s) 16, 65, 80, 83, 121, 428
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 114, 936
MluCI AATT 4 cut(s) 209, 858, 979, 1076
MlyI GAGTC 1 cut(s) 926
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 4 cut(s) 825, 864, 942, 1131
MslI CAYNNNNRTG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 1130
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 307
MvnI CGCG 2 cut(s) 171, 271
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 307
NdeII GATC 4 cut(s) 79, 126, 805, 1072
NlaIII CATG 3 cut(s) 80, 680, 1104
NlaIV GGNNCC 3 cut(s) 204, 278, 1106
NmuCI GTSAC 5 cut(s) 253, 401, 503, 713, 725
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 335
PflMI CCANNNNNTGG 3 cut(s) 286, 458, 601
PkrI GCNGC 1 cut(s) 1152
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PpuMI RGGWCCY 1 cut(s) 1105
Psp5II RGGWCCY 1 cut(s) 1105
PspFI CCCAGC 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 204, 278, 1106
PspPI GGNCC 5 cut(s) 202, 277, 303, 1051, 1105
PspPPI RGGWCCY 1 cut(s) 1105
PsrI GAACNNNNNNTAC 2 cut(s) 715, 747
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 119
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 825, 864, 942, 1131
SatI GCNGC 1 cut(s) 1151
Sau3AI GATC 4 cut(s) 79, 126, 805, 1072
Sau96I GGNCC 5 cut(s) 202, 277, 303, 1051, 1105
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 2 cut(s) 114, 936
SfaNI GCATC 1 cut(s) 652
SinI GGWCC 2 cut(s) 202, 1105
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 424, 1130
SmoI CTYRAG 2 cut(s) 424, 1130
Sse9I AATT 4 cut(s) 209, 858, 979, 1076
SsiI CCGC 2 cut(s) 240, 265
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 4 cut(s) 509, 613, 719, 731
TaiI ACGT 2 cut(s) 324, 505
TaqI TCGA 4 cut(s) 291, 297, 759, 1021
TasI AATT 4 cut(s) 209, 858, 979, 1076
Tru1I TTAA 4 cut(s) 825, 864, 942, 1131
Tru9I TTAA 4 cut(s) 825, 864, 942, 1131
TscAI CASTG 4 cut(s) 262, 541, 792, 1092
TseFI GTSAC 5 cut(s) 253, 401, 503, 713, 725
TseI GCWGC 1 cut(s) 1150
Tsp45I GTSAC 5 cut(s) 253, 401, 503, 713, 725
TspDTI ATGAA 6 cut(s) 17, 81, 692, 828, 911, 926
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 4 cut(s) 262, 541, 792, 1092
Van91I CCANNNNNTGG 3 cut(s) 286, 458, 601
Vha464I CTTAAG 1 cut(s) 1130
VpaK11BI GGWCC 2 cut(s) 202, 1105
XapI RAATTY 1 cut(s) 979
XmiI GTMKAC 2 cut(s) 291, 543
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 1 cut(s) 551
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.