Rh3CG213600

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000430
Physical Location & Seq
Reverse (-)
19597882 .. 19600474
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG213600.1

Sequence Viewer

Length: 906 bp
ATGAACAAGCAGAAAATCAAGACAACCAACACTGAGAGAGATCAAGAAGTAGAAGACAAAAGAGATGATGAGAAACCCTGCATTATTCTACAATTGCCAGACCACATAATCCTGGAGATCTTCTGTAGAATCCCAATAAACACGGTCATCCAATGCAAGTATGTGTGCAAGTCTTGGCGTCGTTCTCTCTCAGACCACGAGTTCTCAAAATCCCTATTTGCGAATTTCAAAAAAAAAGAAAAATCCCTATTTGCACGAACTCCGGCGTGGTTGTTTCTCCAAGACTATAGTAGGACCCACCGGAGCCGAAACACCGAACGTTATCGTATATCCCCGAATAAGCACATCTTGGCCAACTTGGAAAGCGTCTCGAGCCCAAACAACGTGGTCTTGAAGCTTTCAAATCCCAATGCCTTATACAACAGGCTCCATACAAGTTTTACAGGTATTATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGCCATAATCGTAAAATTGATGCTTTCATTTTTAACATATCCAATCCCATTACCGGCGAGTCTGTACCTCTTCCAGTCAATAAAGAAATAGGCCGTCCAGCTCACTTTGGGTTTGGGTATAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACATCCAATGAAGTTAATAAACATCGCTTTTGTTGTCAATTGGACGTGATGGTTTTGACTGTTGGCTCTGTGATTTGGAGAAGAATTGGCAAAGTATCCAATGACATGCATGGAACACGAGAAGGGGTCTTTCATAATGGATTTCTTCACTGGAAAACTCTTTTAATATTTCCGATAAAACGTCTTATTAATATTTCAGGCCGGCAAAATCACGTCTTGAATCTCTTGGGTCTGTTTTCAACTATTTATCCCTCCTCTTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

301

Amino Acids

34.78

Weight (kDa)

9.75

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 68 1.3e-08 F-box domain
F-box-like PF12937 29 - 73 1.5e-07 F-box-like
FBA_3 PF08268 145 - 264 1.2e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 484
AclI AACGTT 1 cut(s) 319
AclWI GGATC 2 cut(s) 450, 463
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 536
AgsI TTSAA 5 cut(s) 229, 394, 402, 859, 879
AjiI CACGTC 2 cut(s) 685, 853
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 397, 584
AluI AGCT 2 cut(s) 397, 584
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 2 cut(s) 450, 463
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 3 cut(s) 351, 574, 838
ApoI RAATTY 1 cut(s) 223
AseI ATTAAT 1 cut(s) 828
AspS9I GGNCC 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 377
BauI CACGAG 2 cut(s) 197, 756
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 1 cut(s) 682
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 373
BfmI CTRYAG 2 cut(s) 124, 286
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 370
BmgBI CACGTC 2 cut(s) 685, 853
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 4 cut(s) 296, 305, 428, 457
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse118I RCCGGY 2 cut(s) 536, 840
Bse1I ACTGG 2 cut(s) 557, 794
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 147, 641
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 24, 204
BseNI ACTGG 2 cut(s) 557, 794
BseRI GAGGAG 1 cut(s) 883
BshFI GGCC 3 cut(s) 353, 576, 840
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 4 cut(s) 263, 301, 537, 841
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 1 cut(s) 373
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 591
BsnI GGCC 3 cut(s) 353, 576, 840
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 40, 117, 455
BspACI CCGC 1 cut(s) 484
BspANI GGCC 3 cut(s) 353, 576, 840
BspCNI CTCAG 2 cut(s) 25, 203
BspLI GGNNCC 4 cut(s) 296, 305, 428, 457
BspPI GGATC 2 cut(s) 450, 463
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 2 cut(s) 536, 840
BsrI ACTGG 2 cut(s) 557, 794
BssAI RCCGGY 2 cut(s) 536, 840
BssMI GATC 3 cut(s) 40, 117, 455
BssNI GRCGYC 1 cut(s) 178
BssSI CACGAG 2 cut(s) 197, 756
Bst2BI CACGAG 2 cut(s) 197, 756
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 145, 700
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 842
BstDEI CTNAG 2 cut(s) 33, 190
BstF5I GGATG 2 cut(s) 147, 641
BstKTI GATC 3 cut(s) 43, 120, 458
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 3 cut(s) 40, 117, 455
BstMWI GCNNNNNNNGC 3 cut(s) 372, 474, 483
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 124, 286
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 117, 455
BstYI RGATCY 2 cut(s) 117, 455
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 353, 576, 840
BtgZI GCGATG 1 cut(s) 647
BtrI CACGTC 2 cut(s) 685, 853
BtsCI GGATG 2 cut(s) 147, 641
BtsIMutI CAGTG 2 cut(s) 30, 787
Cac8I GCNNGC 1 cut(s) 842
Cfr10I RCCGGY 2 cut(s) 536, 840
Cfr13I GGNCC 1 cut(s) 294
CseI GACGC 2 cut(s) 167, 355
Csp6I GTAC 1 cut(s) 548
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 2 cut(s) 745, 749
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 2 cut(s) 33, 190
DpnI GATC 3 cut(s) 42, 119, 457
DpnII GATC 3 cut(s) 40, 117, 455
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 2 cut(s) 748, 752
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 591
FatI CATG 2 cut(s) 744, 748
FokI GGATG 2 cut(s) 134, 628
FriOI GRGCYC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 3 cut(s) 353, 576, 840
HapII CCGG 4 cut(s) 263, 301, 537, 841
HgaI GACGC 2 cut(s) 167, 355
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 748, 752
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 3 cut(s) 129, 542, 859
HpaII CCGG 4 cut(s) 263, 301, 537, 841
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 2 cut(s) 193, 813
Hpy188III TCNNGA 5 cut(s) 19, 44, 370, 391, 856
Hpy8I GTNNAC 1 cut(s) 639
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 2 cut(s) 145, 700
HpyCH4IV ACGT 5 cut(s) 319, 384, 684, 820, 852
HpyCH4V TGCA 6 cut(s) 81, 156, 168, 254, 462, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 474, 483
HpyF3I CTNAG 2 cut(s) 33, 190
HpySE526I ACGT 5 cut(s) 319, 384, 684, 820, 852
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 748, 752
KroI GCCGGC 1 cut(s) 840
KroNI GCCGGC 1 cut(s) 842
Kzo9I GATC 3 cut(s) 40, 117, 455
LmnI GCTCC 2 cut(s) 303, 432
LweI GCATC 1 cut(s) 493
MaeII ACGT 5 cut(s) 319, 384, 684, 820, 852
MalI GATC 3 cut(s) 42, 119, 457
MboI GATC 3 cut(s) 40, 117, 455
MboII GAAGA 5 cut(s) 65, 112, 545, 732, 776
MfeI CAATTG 2 cut(s) 92, 677
MflI RGATCY 2 cut(s) 117, 455
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 5 cut(s) 92, 223, 498, 677, 723
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 1 cut(s) 551
MnlI CCTC 4 cut(s) 482, 561, 901, 904
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 750
MroNI GCCGGC 1 cut(s) 840
MscI TGGCCA 1 cut(s) 353
MseI TTAA 5 cut(s) 516, 654, 803, 828, 904
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 4 cut(s) 263, 301, 537, 841
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 2 cut(s) 92, 677
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 372, 474, 483
NaeI GCCGGC 1 cut(s) 842
NdeII GATC 3 cut(s) 40, 117, 455
NgoMIV GCCGGC 1 cut(s) 840
NlaIII CATG 2 cut(s) 748, 752
NlaIV GGNNCC 4 cut(s) 296, 305, 428, 457
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 1 cut(s) 748
PaeR7I CTCGAG 1 cut(s) 370
PdiI GCCGGC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 129, 859
PfoI TCCNGGA 1 cut(s) 111
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PpuMI RGGWCCY 1 cut(s) 294
PshBI ATTAAT 1 cut(s) 828
Psp1406I AACGTT 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 4 cut(s) 296, 305, 428, 457
PspPI GGNCC 1 cut(s) 294
PspPPI RGGWCCY 1 cut(s) 294
PsuI RGATCY 2 cut(s) 117, 455
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SaqAI TTAA 5 cut(s) 516, 654, 803, 828, 904
Sau3AI GATC 3 cut(s) 40, 117, 455
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 2 cut(s) 124, 286
Sfr274I CTCGAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 5 cut(s) 92, 223, 498, 677, 723
SsiI CCGC 1 cut(s) 484
SspI AATATT 2 cut(s) 807, 832
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 145, 700
TaiI ACGT 5 cut(s) 322, 387, 687, 823, 855
TaqI TCGA 1 cut(s) 371
TasI AATT 5 cut(s) 92, 223, 498, 677, 723
TfiI GAWTC 2 cut(s) 129, 859
Tru1I TTAA 5 cut(s) 516, 654, 803, 828, 904
Tru9I TTAA 5 cut(s) 516, 654, 803, 828, 904
TscAI CASTG 2 cut(s) 37, 794
TspDTI ATGAA 4 cut(s) 17, 499, 663, 761
TspRI CASTG 2 cut(s) 37, 794
VpaK11BI GGWCC 1 cut(s) 294
VspI ATTAAT 1 cut(s) 828
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.