Rh7CG141600

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000430
Physical Location & Seq
Forward (+)
11501135 .. 11502325
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG141600.1

Sequence Viewer

Length: 924 bp
ATGTTCAAATGTTCCACATACAGTAAATTTATTGATTCAGCAGAACAATCTCGTAGCCCCTTATTATCTTCATCAAATTCTACCTCCACCGCTCCACTAATGAACCCAACCAAAGTTTGCCGGCGCCACCCATCGGCCAACAACAAAGAACAACAAGAGAAACCCTCATGCAATATTCTAAAACTACCAATGGATTTAACAGCGGAGATCTTGCACAGACTCCCAGGCAAATCACTCGTCCAGTGCAAGTACGTGTGCTCGTCTTGGCGTTGCTGGCTCCTAAACCCTCAATTCACCAAACCCCTACTCCCACGAAGACGTGGCTGCCTCTTGATCCGTGGCTTCACCGACCTCACAAACCCTAGCACCAGCGGCACCTTCTTCATCGATCTCGACAAGAAAGACCACTCGAAGCCAAACGTCGAGATTGCACTGAAGCTTCCGAGGGATCCGAACCCCCCACCTGTTGGTCTAGCCACTGTAGGTTCGTGCAACGGCCTCCTCTGGCTAGTTGATTTAGATGCCTCTCAATATTATATATCAAATCCCATTACCGGTGAGTCTTTAGCTCTTCCTACAATGCCTACCAAACCGACATGTAAACGGAGCCATATGCAGATAATTTCCGGGCTAGGGTTTTGTCCCTTCAGCCGTGTCTATAAAGTACTATGCACCTTTCCAATAAAAGGTTCTAGTGATGAAGAGGAGGCAATGGTTTTGACAGTTGGCTGCGGAAGGTGGAGAAGCATTGGGCATTATAAAGGCACGGCTGCTGGGAAAACACAAAAGCGTATGATTTATCTGAATGGATCCCTTCACTGGATAAATGATTATGGAAAAAGGACTATTTCGATATGTGCCTTTGATGTTGAGAGAGAGGTGTTCCAACAATTACCATCTTTTACAGTGGGAGCTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

307

Amino Acids

34.26

Weight (kDa)

9.32

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 59 - 99 4.1e-07 F-box domain
FBA_1 PF07734 131 - 298 3.7e-12 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 147 - 290 8.8e-06 KIB1-4 beta-propeller
FBA_3 PF08268 157 - 297 1e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AccB1I GGYRCC 2 cut(s) 123, 374
AccB7I CCANNNNNTGG 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 92
AciI CCGC 4 cut(s) 90, 203, 372, 732
AclWI GGATC 5 cut(s) 328, 443, 456, 804, 817
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 26, 76
AcuI CTGAAG 2 cut(s) 455, 631
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 251, 666
AfiI CCNNNNNNNGG 6 cut(s) 133, 467, 554, 633, 686, 819
AflIII ACRYGT 2 cut(s) 252, 596
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 1 cut(s) 7
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AluBI AGCT 3 cut(s) 439, 569, 914
AluI AGCT 3 cut(s) 439, 569, 914
Alw21I GWGCWC 2 cut(s) 260, 916
AlwI GGATC 5 cut(s) 328, 443, 456, 804, 817
AoxI GGCC 2 cut(s) 135, 496
ApeKI GCWGC 3 cut(s) 324, 729, 770
ApoI RAATTY 2 cut(s) 26, 76
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsiGI ACCGGT 1 cut(s) 554
AspLEI GCGC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 3 cut(s) 286, 337, 569
BamHI GGATCC 2 cut(s) 448, 809
BanI GGYRCC 2 cut(s) 123, 374
BanII GRGCYC 1 cut(s) 916
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 260, 916
BbvI GCAGC 3 cut(s) 311, 716, 757
BccI CCATC 2 cut(s) 139, 904
BceAI ACGGC 3 cut(s) 511, 636, 783
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 1 cut(s) 628
BfaI CTAG 5 cut(s) 363, 473, 509, 632, 693
BfmI CTRYAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 127
BglII AGATCT 1 cut(s) 207
BisI GCNGC 4 cut(s) 325, 373, 730, 771
BlsI GCNGC 4 cut(s) 326, 374, 731, 772
BmcAI AGTACT 1 cut(s) 666
Bme1390I CCNGG 2 cut(s) 225, 628
BmgBI CACGTC 1 cut(s) 320
BmiI GGNNCC 6 cut(s) 125, 278, 376, 450, 608, 811
BmrFI CCNGG 2 cut(s) 225, 628
BmsI GCATC 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 322
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuMI CCSGG 1 cut(s) 628
Bsa29I ATCGAT 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 3 cut(s) 223, 337, 443
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 6 cut(s) 133, 467, 554, 633, 686, 819
Bse118I RCCGGY 2 cut(s) 120, 554
Bse1I ACTGG 2 cut(s) 241, 824
Bse3DI GCAATG 1 cut(s) 717
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 223, 337, 443
BseLI CCNNNNNNNGG 6 cut(s) 133, 467, 554, 633, 686, 819
BseMI GCAATG 1 cut(s) 717
BseNI ACTGG 2 cut(s) 241, 824
BseRI GAGGAG 2 cut(s) 491, 719
BseXI GCAGC 3 cut(s) 311, 716, 757
BseYI CCCAGC 1 cut(s) 773
BshFI GGCC 2 cut(s) 137, 498
BshNI GGYRCC 2 cut(s) 123, 374
BshTI ACCGGT 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 260, 916
BsiSI CCGG 3 cut(s) 121, 555, 627
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 6 cut(s) 133, 467, 554, 633, 686, 819
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 2 cut(s) 137, 498
Bsp1286I GDGCHC 2 cut(s) 260, 916
Bsp143I GATC 5 cut(s) 207, 333, 388, 448, 809
BspACI CCGC 4 cut(s) 90, 203, 372, 732
BspANI GGCC 2 cut(s) 137, 498
BspDI ATCGAT 1 cut(s) 387
BspLI GGNNCC 6 cut(s) 125, 278, 376, 450, 608, 811
BspPI GGATC 5 cut(s) 328, 443, 456, 804, 817
BspQI GCTCTTC 1 cut(s) 576
BspT107I GGYRCC 2 cut(s) 123, 374
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 717
BsrFI RCCGGY 2 cut(s) 120, 554
BsrI ACTGG 2 cut(s) 241, 824
BssAI RCCGGY 2 cut(s) 120, 554
BssECI CCNNGG 3 cut(s) 223, 337, 443
BssMI GATC 5 cut(s) 207, 333, 388, 448, 809
BssNI GRCGYC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 4 cut(s) 23, 481, 724, 907
Bst6I CTCTTC 2 cut(s) 576, 696
BstACI GRCGYC 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 122, 275
BstDSI CCRYGG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 5 cut(s) 210, 336, 391, 451, 812
BstMBI GATC 5 cut(s) 207, 333, 388, 448, 809
BstMWI GCNNNNNNNGC 2 cut(s) 274, 372
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 223, 626
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 311, 716, 757
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 3 cut(s) 207, 448, 809
BstYI RGATCY 3 cut(s) 207, 448, 809
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 2 cut(s) 137, 498
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 337
BtrI CACGTC 1 cut(s) 320
BtsIMutI CAGTG 5 cut(s) 248, 431, 477, 817, 912
Cac8I GCNNGC 2 cut(s) 122, 275
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 2 cut(s) 120, 554
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 2 cut(s) 250, 665
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 2 cut(s) 168, 597
CviQI GTAC 2 cut(s) 250, 665
DinI GGCGCC 1 cut(s) 125
DpnI GATC 5 cut(s) 209, 335, 390, 450, 811
DpnII GATC 5 cut(s) 207, 333, 388, 448, 809
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 576, 696
EarI CTCTTC 2 cut(s) 576, 696
Ecl136II GAGCTC 1 cut(s) 914
Eco24I GRGCYC 1 cut(s) 916
Eco53kI GAGCTC 1 cut(s) 914
Eco57I CTGAAG 2 cut(s) 455, 631
EcoICRI GAGCTC 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 916
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
FaeI CATG 2 cut(s) 171, 600
FaqI GGGAC 1 cut(s) 627
FatI CATG 2 cut(s) 167, 596
FauNDI CATATG 1 cut(s) 612
Fnu4HI GCNGC 4 cut(s) 325, 373, 730, 771
FriOI GRGCYC 1 cut(s) 916
Fsp4HI GCNGC 4 cut(s) 325, 373, 730, 771
FspBI CTAG 5 cut(s) 363, 473, 509, 632, 693
GlaI GCGC 1 cut(s) 125
GluI GCNGC 4 cut(s) 325, 373, 730, 771
GsaI CCCAGC 1 cut(s) 777
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 137, 498
HapII CCGG 3 cut(s) 121, 555, 627
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 171, 600
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 35, 219, 560
HpaII CCGG 3 cut(s) 121, 555, 627
HphI GGTGA 3 cut(s) 286, 337, 569
Hpy166II GTNNAC 1 cut(s) 602
Hpy188I TCNGA 3 cut(s) 444, 453, 804
Hpy188III TCNNGA 3 cut(s) 331, 392, 424
Hpy8I GTNNAC 1 cut(s) 602
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 4 cut(s) 388, 655, 729, 824
HpyCH4III ACNGT 4 cut(s) 23, 481, 724, 907
HpyCH4IV ACGT 3 cut(s) 252, 319, 420
HpyCH4V TGCA 7 cut(s) 171, 214, 246, 431, 492, 616, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 372
HpySE526I ACGT 3 cut(s) 252, 319, 420
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 171, 600
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Kzo9I GATC 5 cut(s) 207, 333, 388, 448, 809
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 5 cut(s) 97, 282, 606, 911, 919
Lsp1109I GCAGC 3 cut(s) 311, 716, 757
LweI GCATC 1 cut(s) 511
MaeI CTAG 5 cut(s) 363, 473, 509, 632, 693
MaeII ACGT 3 cut(s) 252, 319, 420
MalI GATC 5 cut(s) 209, 335, 390, 450, 811
MbiI CCGCTC 1 cut(s) 92
MboI GATC 5 cut(s) 207, 333, 388, 448, 809
MboII GAAGA 5 cut(s) 60, 327, 373, 563, 713
MflI RGATCY 3 cut(s) 207, 448, 809
MhlI GDGCHC 2 cut(s) 260, 916
MluCI AATT 5 cut(s) 26, 76, 290, 621, 890
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 2 cut(s) 213, 569
MmeI TCCRAC 1 cut(s) 910
MroNI GCCGGC 1 cut(s) 120
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 203, 372
MspI CCGG 3 cut(s) 121, 555, 627
MspR9I CCNGG 2 cut(s) 225, 628
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 274, 372
NaeI GCCGGC 1 cut(s) 122
NarI GGCGCC 1 cut(s) 124
NciI CCSGG 1 cut(s) 628
NdeI CATATG 1 cut(s) 612
NdeII GATC 5 cut(s) 207, 333, 388, 448, 809
NgoMIV GCCGGC 1 cut(s) 120
NlaIII CATG 2 cut(s) 171, 600
NlaIV GGNNCC 6 cut(s) 125, 278, 376, 450, 608, 811
NspI RCATGY 1 cut(s) 600
PciI ACATGT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 576
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 467
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 4 cut(s) 326, 374, 731, 772
PleI GAGTC 2 cut(s) 213, 568
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 2 cut(s) 213, 568
Ppu21I YACGTR 1 cut(s) 253
PscI ACATGT 1 cut(s) 596
PsiI TTATAA 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 916
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 6 cut(s) 125, 278, 376, 450, 608, 811
PsuI RGATCY 3 cut(s) 207, 448, 809
RsaI GTAC 2 cut(s) 251, 666
RsaNI GTAC 2 cut(s) 250, 665
SacI GAGCTC 1 cut(s) 916
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 4 cut(s) 325, 373, 730, 771
Sau3AI GATC 5 cut(s) 207, 333, 388, 448, 809
ScaI AGTACT 1 cut(s) 666
SchI GAGTC 2 cut(s) 213, 569
ScrFI CCNGG 2 cut(s) 225, 628
SduI GDGCHC 2 cut(s) 260, 916
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 1 cut(s) 480
SfoI GGCGCC 1 cut(s) 125
Sse9I AATT 5 cut(s) 26, 76, 290, 621, 890
SsiI CCGC 4 cut(s) 90, 203, 372, 732
SspDI GGCGCC 1 cut(s) 123
SspI AATATT 2 cut(s) 175, 533
SspMI CTAG 5 cut(s) 363, 473, 509, 632, 693
SstI GAGCTC 1 cut(s) 916
StyD4I CCNGG 2 cut(s) 223, 626
TaaI ACNGT 4 cut(s) 23, 481, 724, 907
TaiI ACGT 3 cut(s) 255, 322, 423
TaqI TCGA 5 cut(s) 387, 393, 410, 423, 851
TasI AATT 5 cut(s) 26, 76, 290, 621, 890
TatI WGTACW 1 cut(s) 664
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 5 cut(s) 248, 438, 484, 824, 912
TseI GCWGC 3 cut(s) 324, 729, 770
TspDTI ATGAA 4 cut(s) 60, 116, 373, 714
TspGWI ACGGA 2 cut(s) 326, 619
TspRI CASTG 5 cut(s) 248, 438, 484, 824, 912
Van91I CCANNNNNTGG 1 cut(s) 467
XapI RAATTY 2 cut(s) 26, 76
XceI RCATGY 1 cut(s) 600
XspI CTAG 5 cut(s) 363, 473, 509, 632, 693
ZrmI AGTACT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.