Rorug03G0138300

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000430
Physical Location & Seq
Forward (+)
11367403 .. 11368994
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138300.1

Sequence Viewer

Length: 912 bp
ATGGAGTTCCATGAAGACCGTTACAGGCAGGCTCAGAGGCCAAAATATGATTGTCTTCTATTTGATCTAGATGATACCCTTTATCCCCTAAGTACTGGTGTTGCTACTGCTTGCCGCAATAACATAGAAGATTATATGGTTGAAAAGCTTGGCATTGAGAGGAGCATCATCCCTGAATTGGGTAACCTGCTGTACAAGAATTATGGAACTACAATGGCTGGACTTAGGGCAATTGGCTATGACTTTGACTATGATGAATACCACAGTTTTGTCCATGGTAGATTACCTTATGAGAACATCAAACCAGACCCTGTTTTGAGGAGTCTTTTGCTCAACCTGCCTTACAGGAAAATTATATTCACAAATGCAGACAAGGTCCATGCTGCTAAAGCACTAAGCAGGCTTGGTTTAGAAGATTGCTTTGAGGGAATTATCTGCTTTGAGACCCTCAACCCTATTCACAAAAGCACTGTTTCTGATGATGAAGATGACATTGAGTTTGTGGGATTAAGCACTGCTCAAATTCCTGCCACCACAACAACTACTAGTAGCTCTGAGATTTTTGACATCATTGCCCATTTTGCTCAAGCAAACCCCTCTTCAAAATTACCCAAAACCCCAATTGTGTGCAAGCCATCCGAAGCTGCCATAGAAAAAGCCCTCGAGATAGCCCACATTAACCCTCAGAGAACACTGTTCTTTGAAGATAGTGTCAGGAACATACAAGCTGGCAAAAGAGTGGGTCTTCACACTGTGCTGGTTGGCACATCACAGAGAGTTAAAGGTGCTGACTTTGCACTAGAAAGCATCCACAATCTGAGGGAAGCACTGCCAGAGCTTTGGGAAGCTGATAGGAAATCTGAAGTTGGTTACCCGGGAAAAGTAGCGGTGGAAACTTCAGTCACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

303

Amino Acids

33.93

Weight (kDa)

5.25

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_2 PF13419 186 - 254 1.5e-06 Haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 195, 345
AciI CCGC 2 cut(s) 115, 887
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 2 cut(s) 882, 882
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 2 cut(s) 94, 194
AfiI CCNNNNNNNGG 2 cut(s) 178, 179
AgsI TTSAA 3 cut(s) 143, 603, 704
AhlI ACTAGT 1 cut(s) 545
AluBI AGCT 7 cut(s) 148, 552, 644, 728, 838, 848, 908
AluI AGCT 7 cut(s) 148, 552, 644, 728, 838, 848, 908
Alw26I GTCTC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 2 cut(s) 662, 874
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 383, 644
ApoI RAATTY 1 cut(s) 522
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 2 cut(s) 875, 876
AvaI CYCGRG 2 cut(s) 662, 874
AvaII GGWCC 1 cut(s) 376
BbsI GAAGAC 3 cut(s) 21, 47, 737
BbvI GCAGC 2 cut(s) 370, 631
BccI CCATC 1 cut(s) 643
BcnI CCSGG 2 cut(s) 875, 876
BcoDI GTCTC 1 cut(s) 437
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 3 cut(s) 68, 546, 800
BfuAI ACCTGC 2 cut(s) 195, 345
BisI GCNGC 3 cut(s) 115, 384, 645
BlsI GCNGC 3 cut(s) 116, 385, 646
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 875, 876
Bme18I GGWCC 1 cut(s) 376
BmeT110I CYCGRG 2 cut(s) 662, 874
BmgT120I GGNCC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 875, 876
BmsI GCATC 2 cut(s) 174, 816
BpiI GAAGAC 3 cut(s) 21, 47, 737
BpuEI CTTGAG 1 cut(s) 570
BpuMI CCSGG 2 cut(s) 875, 876
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 274, 874
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 179
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 274, 874
BseGI GGATG 3 cut(s) 168, 635, 807
BseLI CCNNNNNNNGG 2 cut(s) 178, 179
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 4 cut(s) 47, 546, 698, 809
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 175, 334
BseXI GCAGC 2 cut(s) 370, 631
BshFI GGCC 1 cut(s) 40
BsiHKCI CYCGRG 2 cut(s) 662, 874
BsiSI CCGG 1 cut(s) 875
BslI CCNNNNNNNGG 2 cut(s) 178, 179
BsmAI GTCTC 1 cut(s) 437
BsnI GGCC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 2 cut(s) 662, 874
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 2 cut(s) 115, 887
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 4 cut(s) 46, 547, 697, 810
BspMI ACCTGC 2 cut(s) 195, 345
BspTNI GGTCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 570
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 274, 874
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 274
Bst4CI ACNGT 5 cut(s) 20, 266, 472, 696, 754
Bst6I CTCTTC 1 cut(s) 604
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 5 cut(s) 30, 112, 401, 632, 730
BstDEI CTNAG 8 cut(s) 33, 89, 224, 395, 555, 684, 818, 909
BstDSI CCRYGG 1 cut(s) 274
BstEII GGTNACC 2 cut(s) 182, 869
BstF5I GGATG 3 cut(s) 168, 635, 807
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 4 cut(s) 337, 389, 581, 794
BstPI GGTNACC 2 cut(s) 182, 869
BstSCI CCNGG 2 cut(s) 873, 874
BstV1I GCAGC 2 cut(s) 370, 631
BstV2I GAAGAC 3 cut(s) 21, 47, 737
BstXI CCANNNNNNTGG 1 cut(s) 840
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 3 cut(s) 168, 635, 807
BtsI GCAGTG 2 cut(s) 513, 827
BtsIMutI CAGTG 5 cut(s) 468, 513, 692, 750, 827
BveI ACCTGC 2 cut(s) 195, 345
Cac8I GCNNGC 5 cut(s) 30, 112, 401, 632, 730
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 376
Cfr9I CCCGGG 1 cut(s) 874
Csp6I GTAC 2 cut(s) 93, 193
CviAII CATG 3 cut(s) 11, 275, 380
CviQI GTAC 2 cut(s) 93, 193
DdeI CTNAG 8 cut(s) 33, 89, 224, 395, 555, 684, 818, 909
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 604
EarI CTCTTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 882, 882
Eco88I CYCGRG 2 cut(s) 662, 874
Eco91I GGTNACC 2 cut(s) 182, 869
EcoO65I GGTNACC 2 cut(s) 182, 869
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 14, 278, 383
FatI CATG 3 cut(s) 10, 274, 379
Fnu4HI GCNGC 3 cut(s) 115, 384, 645
FokI GGATG 3 cut(s) 155, 622, 794
Fsp4HI GCNGC 3 cut(s) 115, 384, 645
FspBI CTAG 3 cut(s) 68, 546, 800
GluI GCNGC 3 cut(s) 115, 384, 645
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 875
Hin1II CATG 3 cut(s) 14, 278, 383
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 875
Hpy188I TCNGA 7 cut(s) 36, 478, 556, 640, 687, 819, 862
Hpy188III TCNNGA 3 cut(s) 68, 664, 715
HpyCH4III ACNGT 5 cut(s) 20, 266, 472, 696, 754
HpyCH4V TGCA 3 cut(s) 368, 630, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 389, 581, 794
HpyF3I CTNAG 8 cut(s) 33, 89, 224, 395, 555, 684, 818, 909
Hsp92II CATG 3 cut(s) 14, 278, 383
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 162
Lsp1109I GCAGC 2 cut(s) 370, 631
LweI GCATC 2 cut(s) 174, 816
MaeI CTAG 3 cut(s) 68, 546, 800
MaeIII GTNAC 4 cut(s) 20, 182, 869, 901
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 8 cut(s) 26, 47, 140, 425, 497, 591, 716, 737
MfeI CAATTG 2 cut(s) 231, 621
MluCI AATT 8 cut(s) 176, 199, 231, 351, 429, 522, 605, 621
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 9 cut(s) 30, 153, 312, 418, 458, 607, 671, 693, 813
MseI TTAA 3 cut(s) 509, 678, 780
MspI CCGG 1 cut(s) 875
MspR9I CCNGG 2 cut(s) 875, 876
MunI CAATTG 2 cut(s) 231, 621
MwoI GCNNNNNNNGC 4 cut(s) 337, 389, 581, 794
NciI CCSGG 2 cut(s) 875, 876
NcoI CCATGG 1 cut(s) 274
NdeII GATC 1 cut(s) 64
NlaIII CATG 3 cut(s) 14, 278, 383
NmuCI GTSAC 1 cut(s) 901
PaeR7I CTCGAG 1 cut(s) 662
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 116, 385, 646
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PspEI GGTNACC 2 cut(s) 182, 869
PspPI GGNCC 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 2 cut(s) 94, 194
RsaNI GTAC 2 cut(s) 93, 193
SaqAI TTAA 3 cut(s) 509, 678, 780
SatI GCNGC 3 cut(s) 115, 384, 645
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 376
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 875, 876
SfaNI GCATC 2 cut(s) 174, 816
Sfr274I CTCGAG 1 cut(s) 662
SinI GGWCC 1 cut(s) 376
SlaI CTCGAG 1 cut(s) 662
SmaI CCCGGG 1 cut(s) 876
SmlI CTYRAG 2 cut(s) 585, 662
SmoI CTYRAG 2 cut(s) 585, 662
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 8 cut(s) 176, 199, 231, 351, 429, 522, 605, 621
SsiI CCGC 2 cut(s) 115, 887
SspMI CTAG 3 cut(s) 68, 546, 800
StyD4I CCNGG 2 cut(s) 873, 874
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 5 cut(s) 20, 266, 472, 696, 754
TaqI TCGA 1 cut(s) 663
TasI AATT 8 cut(s) 176, 199, 231, 351, 429, 522, 605, 621
TatI WGTACW 2 cut(s) 92, 192
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 509, 678, 780
Tru9I TTAA 3 cut(s) 509, 678, 780
TscAI CASTG 5 cut(s) 475, 520, 699, 757, 834
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 2 cut(s) 383, 644
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 3 cut(s) 27, 270, 498
TspMI CCCGGG 1 cut(s) 874
TspRI CASTG 5 cut(s) 475, 520, 699, 757, 834
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 522
XbaI TCTAGA 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 662
XmaI CCCGGG 1 cut(s) 874
XspI CTAG 3 cut(s) 68, 546, 800
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.