FvH4_3g37340

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
32060485 .. 32061779
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37340.t1

Sequence Viewer

Length: 639 bp
ATGCCTTGTCATACAAACTATACAGGTATCATGGGTTCCTGCAACGGCTTCCTCTGCTTATTCCGCTATAATGATAAAACTGATGCCTTCATCTTTAACATATCCAACCCAATCACTCACGAGTGTATACCTCTTCCGGTCAATGAGGAAATACGTTCTCCACTACCTGATTTTGGGTTTGGGTTTAGTCCCATAAGTGATGTCTATAAGGTGGTTGTCTTTGCAAACAATAGAAAAAGGAAAGAGTACTGTCGTGATTTGAAGGTGATGGTTTTAACTGTTGGCTTTGAGATTTGGAGAAGAATTGGCAAAATCCGTGATACCGTGGGCACAACAAAAGGGGTCTTTCATGAAGGACATCTCCATTGGGTTTGCGGTTGTAATGGTTATCGCCCTCATTTCATACGTGCATTTGATGTCGAAAGTGAGCATTTCAAGGATTTACCAATGCCCCCTCATTATTTCAATCACAGTTCTATACCTGAATTGGGAGTCATAGGAGGCTCACTTTCTGTAAGTGATGGAAGCACGTTTTGGATAATGAAAGAGTACGGCGTTAAAGCTTCTTGGACCAAAGTGCTTGAAATTGGATATGATACAATTGATTCAATTATTGGCAATTTATACAAGCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

24.17

Weight (kDa)

7.09

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 4 - 192 7.6e-21 F-box associated beta propeller domain
FBA_1 PF07734 12 - 195 2.4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 127
AciI CCGC 2 cut(s) 64, 375
AfaI GTAC 2 cut(s) 248, 551
AfiI CCNNNNNNNGG 2 cut(s) 173, 488
AgsI TTSAA 5 cut(s) 262, 436, 466, 584, 609
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 1 cut(s) 563
AluI AGCT 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 570
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 570
BaeGI GKGCMC 1 cut(s) 332
BauI CACGAG 1 cut(s) 119
BccI CCATC 2 cut(s) 262, 515
BceAI ACGGC 2 cut(s) 61, 568
BmcAI AGTACT 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 488
BseDI CCNNGG 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 173, 488
BseSI GKGCMC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 173, 488
BsmFI GGGAC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 332
BspACI CCGC 2 cut(s) 64, 375
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 324
BssNAI GTATAC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 119
Bst1107I GTATAC 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 119
Bst4CI ACNGT 4 cut(s) 251, 280, 325, 473
Bst6I CTCTTC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 54, 63
BstSLI GKGCMC 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 570
Csp6I GTAC 2 cut(s) 247, 550
CviAII CATG 2 cut(s) 31, 350
CviJI RGCY 4 cut(s) 48, 285, 504, 563
CviKI_1 RGCY 4 cut(s) 48, 285, 504, 563
CviQI GTAC 2 cut(s) 247, 550
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 570
FaeI CATG 2 cut(s) 34, 353
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 30, 349
FblI GTMKAC 1 cut(s) 127
HapII CCGG 1 cut(s) 137
Hin1II CATG 2 cut(s) 34, 353
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 2 cut(s) 492, 605
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 119, 254, 350
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 97, 256, 347
HpyCH4III ACNGT 4 cut(s) 251, 280, 325, 473
HpyCH4IV ACGT 3 cut(s) 154, 406, 530
HpyCH4V TGCA 3 cut(s) 42, 224, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 63
HpySE526I ACGT 3 cut(s) 154, 406, 530
Hsp92II CATG 2 cut(s) 34, 353
LpnPI CCDG 5 cut(s) 9, 52, 150, 180, 495
LweI GCATC 1 cut(s) 73
MaeII ACGT 3 cut(s) 154, 406, 530
MboII GAAGA 2 cut(s) 125, 312
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 6 cut(s) 303, 485, 585, 600, 609, 619
MlyI GAGTC 1 cut(s) 501
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 6 cut(s) 62, 139, 141, 405, 465, 494
MseI TTAA 3 cut(s) 96, 275, 558
MspI CCGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 600
MwoI GCNNNNNNNGC 2 cut(s) 54, 63
NlaIII CATG 2 cut(s) 34, 353
NlaIV GGNNCC 1 cut(s) 37
PagI TCATGA 1 cut(s) 349
PfeI GAWTC 1 cut(s) 605
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
Ppu21I YACGTR 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 570
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
RsaI GTAC 2 cut(s) 248, 551
RsaNI GTAC 2 cut(s) 247, 550
SaqAI TTAA 3 cut(s) 96, 275, 558
Sau96I GGNCC 1 cut(s) 570
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 1 cut(s) 501
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 570
Sse9I AATT 6 cut(s) 303, 485, 585, 600, 609, 619
SsiI CCGC 2 cut(s) 64, 375
TaaI ACNGT 4 cut(s) 251, 280, 325, 473
TaiI ACGT 3 cut(s) 157, 409, 533
TaqI TCGA 1 cut(s) 420
TasI AATT 6 cut(s) 303, 485, 585, 600, 609, 619
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 3 cut(s) 96, 275, 558
Tru9I TTAA 3 cut(s) 96, 275, 558
TscAI CASTG 1 cut(s) 638
TspDTI ATGAA 5 cut(s) 79, 338, 366, 391, 557
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.