Rorug04G0117300
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000430
Physical Location & Seq
Reverse (-)
18523412 .. 18526352
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0117300.1

Sequence Viewer

Length: 867 bp
ATGAACCCCTCAAACCTCCTCCCCACCCAGAATCTAACGATGGGATGTCCAGTCCTGGACCGCTGCCTCGGCGGCGGAATCCCCTGCAACTCCCTCACGGAGCTCGTAGCCGAGAGCAGCTGCGGCAAGACCCAATTCTGCCTCCAACTCACTCTCTTCGCTCAGCTCCCTCCTTCCTACGGCGGCCTCTCCGCCTCCTCTCTTTACCTCCACACAGAATTCCCTTTCCCCTTTCGCCGCCTCCGCCACCTCTCCCACTCCTTCCGCTCCTCCCACGCGAATCTTATCCTCTCCAACCCTTGTGAAGATGTATACGTTCACGCTGTACACGATGCACACCACCTGCTCGACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTGATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGCGGAGGACCTTCCTGTTCTTCGAGATTTCCGGGATGTTGAAGTTGTTGGCGAGAAAGTACAGCTTGGCGGTGGTGGTGATGAACCAGGTGGTTGATTTTATGGGGGAAGTAGAGGGGATAAGTGGGATGAGAGTTGGGAATTTGAGCTCCTTGCGTTCATCCGGAAGACGGGTTTGTCCTGCTTTGGGATTAGCTTGGTCACGTTGCGTGAATTCGAGGTTGTTCTTGTTTAGAAATGAGGAGATTGTTGGGAGAGAAAATGATGGGTTGGAGGATGATCTGTTCAGGCAAACAAGAAGGCGACTTGATGTTGTTTTTGCTCCTCATTTGCCGCCATCATCTTGTGAGTTTGTAATCACAAAGCAAGGGGTGTTTGGAGTTGACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

288

Amino Acids

32.25

Weight (kDa)

8.87

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 11 - 191 4.8e-25 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 351
AasI GACNNNNNNGTC 1 cut(s) 651
Acc36I ACCTGC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 638
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 4 cut(s) 218, 449, 616, 688
AfaI GTAC 2 cut(s) 327, 536
AfiI CCNNNNNNNGG 3 cut(s) 179, 645, 662
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 2 cut(s) 54, 561
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
AluBI AGCT 6 cut(s) 103, 120, 166, 540, 624, 671
AluI AGCT 6 cut(s) 103, 120, 166, 540, 624, 671
Alw21I GWGCWC 2 cut(s) 105, 626
AlwI GGATC 1 cut(s) 477
Aor13HI TCCGGA 1 cut(s) 638
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 5 cut(s) 63, 117, 120, 397, 444
ApoI RAATTY 4 cut(s) 218, 449, 616, 688
AspS9I GGNCC 2 cut(s) 58, 483
AsuC2I CCSGG 2 cut(s) 394, 508
AsuHPI GGTGA 1 cut(s) 565
AvaII GGWCC 2 cut(s) 58, 483
BanII GRGCYC 2 cut(s) 105, 626
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 2 cut(s) 105, 626
BbvI GCAGC 5 cut(s) 50, 107, 129, 384, 456
BccI CCATC 3 cut(s) 34, 734, 820
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 56, 563
BcnI CCSGG 2 cut(s) 394, 508
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 351
BglI GCCNNNNNGGC 2 cut(s) 72, 406
BlpI GCTNAGC 1 cut(s) 162
Bme1390I CCNGG 4 cut(s) 56, 394, 508, 563
Bme18I GGWCC 2 cut(s) 58, 483
BmgT120I GGNCC 2 cut(s) 58, 483
BmrFI CCNGG 4 cut(s) 56, 394, 508, 563
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 649
Bpu1102I GCTNAGC 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 394, 508
BsaJI CCNNGG 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 645, 662
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 638
BseBI CCWGG 2 cut(s) 56, 563
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 5 cut(s) 50, 516, 609, 635, 757
BseLI CCNNNNNNNGG 3 cut(s) 179, 645, 662
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 5 cut(s) 8, 187, 259, 731, 789
BseXI GCAGC 5 cut(s) 50, 107, 129, 384, 456
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 105, 626
BsiSI CCGG 3 cut(s) 394, 507, 639
BslI CCNNNNNNNGG 3 cut(s) 179, 645, 662
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 105, 626
Bsp13I TCCGGA 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 469, 754
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 638
BspFNI CGCG 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 477
BspTI CTTAAG 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 325
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 469, 754
BssNAI GTATAC 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 313
Bst2UI CCWGG 2 cut(s) 56, 563
Bst6I CTCTTC 1 cut(s) 161
BstAFI CTTAAG 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 5 cut(s) 50, 516, 609, 635, 757
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 2 cut(s) 472, 757
BstMBI GATC 2 cut(s) 469, 754
BstMWI GCNNNNNNNGC 6 cut(s) 69, 72, 123, 243, 406, 453
BstNI CCWGG 2 cut(s) 56, 563
BstSCI CCNGG 4 cut(s) 54, 392, 506, 561
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 5 cut(s) 50, 107, 129, 384, 456
BstV2I GAAGAC 1 cut(s) 649
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BstZ17I GTATAC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 5 cut(s) 50, 516, 609, 635, 757
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 58, 483
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 2 cut(s) 326, 535
CviQI GTAC 2 cut(s) 326, 535
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 471, 756
DpnII GATC 2 cut(s) 469, 754
DrdI GACNNNNNNGTC 1 cut(s) 651
DseDI GACNNNNNNGTC 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 3 cut(s) 90, 181, 233
Ecl136II GAGCTC 2 cut(s) 103, 624
Eco24I GRGCYC 2 cut(s) 105, 626
Eco47I GGWCC 2 cut(s) 58, 483
Eco53kI GAGCTC 2 cut(s) 103, 624
EcoICRI GAGCTC 2 cut(s) 103, 624
EcoO109I RGGNCCY 1 cut(s) 483
EcoRI GAATTC 2 cut(s) 218, 688
EcoRII CCWGG 2 cut(s) 54, 561
EcoT38I GRGCYC 2 cut(s) 105, 626
FaiI YATR 3 cut(s) 313, 353, 578
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FblI GTMKAC 1 cut(s) 312
FokI GGATG 5 cut(s) 57, 523, 616, 622, 764
FriOI GRGCYC 2 cut(s) 105, 626
HaeIII GGCC 1 cut(s) 186
HapII CCGG 3 cut(s) 394, 507, 639
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 4 cut(s) 31, 78, 280, 422
HpaII CCGG 3 cut(s) 394, 507, 639
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 4 cut(s) 313, 319, 328, 859
Hpy188III TCNNGA 2 cut(s) 499, 639
Hpy8I GTNNAC 4 cut(s) 313, 319, 328, 859
HpyAV CCTTC 4 cut(s) 183, 271, 496, 768
HpyCH4IV ACGT 2 cut(s) 315, 679
HpyCH4V TGCA 2 cut(s) 87, 335
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 72, 123, 243, 406, 453
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 315, 679
Kpn2I TCCGGA 1 cut(s) 638
Kzo9I GATC 2 cut(s) 469, 754
LmnI GCTCC 5 cut(s) 100, 171, 272, 629, 802
Lsp1109I GCAGC 5 cut(s) 50, 107, 129, 384, 456
LweI GCATC 1 cut(s) 322
MabI ACCWGGT 1 cut(s) 561
MaeII ACGT 2 cut(s) 315, 679
MaeIII GTNAC 1 cut(s) 675
MalI GATC 2 cut(s) 471, 756
MbiI CCGCTC 1 cut(s) 267
MboI GATC 2 cut(s) 469, 754
MboII GAAGA 4 cut(s) 148, 317, 487, 654
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 105, 626
MluCI AATT 5 cut(s) 134, 218, 449, 616, 688
MmeI TCCRAC 3 cut(s) 169, 318, 726
MroI TCCGGA 1 cut(s) 638
MseI TTAA 1 cut(s) 474
MspA1I CMGCKG 2 cut(s) 63, 120
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 3 cut(s) 394, 507, 639
MspR9I CCNGG 4 cut(s) 56, 394, 508, 563
MvaI CCWGG 2 cut(s) 56, 563
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 69, 72, 123, 243, 406, 453
NciI CCSGG 2 cut(s) 394, 508
NdeII GATC 2 cut(s) 469, 754
NmeAIII GCCGAG 2 cut(s) 48, 136
NmuCI GTSAC 1 cut(s) 675
PaqCI CACCTGC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 4 cut(s) 31, 78, 280, 422
PfoI TCCNGGA 2 cut(s) 54, 506
PpuMI RGGWCCY 1 cut(s) 483
Psp124BI GAGCTC 2 cut(s) 105, 626
Psp5II RGGWCCY 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 54, 561
PspGI CCWGG 2 cut(s) 54, 561
PspPI GGNCC 2 cut(s) 58, 483
PspPPI RGGWCCY 1 cut(s) 483
PsuI RGATCY 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 2 cut(s) 327, 536
RsaNI GTAC 2 cut(s) 326, 535
SacI GAGCTC 2 cut(s) 105, 626
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 2 cut(s) 469, 754
Sau96I GGNCC 2 cut(s) 58, 483
ScrFI CCNGG 4 cut(s) 56, 394, 508, 563
SduI GDGCHC 2 cut(s) 105, 626
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 2 cut(s) 58, 483
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 5 cut(s) 134, 218, 449, 616, 688
SstI GAGCTC 2 cut(s) 105, 626
StyD4I CCNGG 4 cut(s) 54, 392, 506, 561
TaiI ACGT 2 cut(s) 318, 682
TaqI TCGA 3 cut(s) 348, 498, 692
TasI AATT 5 cut(s) 134, 218, 449, 616, 688
TatI WGTACW 2 cut(s) 325, 534
TauI GCSGC 6 cut(s) 75, 126, 186, 240, 434, 811
TfiI GAWTC 4 cut(s) 31, 78, 280, 422
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 675
TseI GCWGC 5 cut(s) 63, 117, 120, 397, 444
Tsp45I GTSAC 1 cut(s) 675
TspDTI ATGAA 3 cut(s) 17, 572, 624
TspGWI ACGGA 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 58, 483
XapI RAATTY 4 cut(s) 218, 449, 616, 688
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.